Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC0513(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for CAC0513
Module neighborhood information for CAC0513
|Gene||Common Name||Description||Module membership|
|CAC0144||sfsa||Sugar fermentation-stimulation protein (NCBI ptt file)||154, 363|
|CAC0245||CAC0245||ABC transporter ATP-binding protein (NCBI ptt file)||154, 220|
|CAC0296||csfB||Zn-finger containing protein, csfB B.subtilis homolog (NCBI ptt file)||64, 154|
|CAC0473||dnaK||DnaK protein (heat shock protein), C-terminal region has VWA type A domain (NCBI ptt file)||14, 41|
|CAC0502||uvrB||Excinuclease ABC subunit B (helicase subunit of the DNA excision repair complex) (NCBI ptt file)||154, 335|
|CAC0503||uvrA||Excinuclease ABC subunit A (ATP-ase), (uvrA) (NCBI ptt file)||154, 335|
|CAC0512||CAC0512||Uncharacterized conserved protein, YbhK/UPF0052 family (NCBI ptt file)||41, 343|
|CAC0513||CAC0513||Uncharacterized conserved protein, similar to B.subtilis yvcL (NCBI ptt file)||41, 154|
|CAC0524||CAC0524||Response regulator (CheY-like and HTH domains) (NCBI ptt file)||154, 230|
|CAC0526||CAC0526||ABC transporter, ATPase component (NCBI ptt file)||154, 230|
|CAC0527||CAC0527||Predicted permease, domain duplication (NCBI ptt file)||70, 154|
|CAC0531||CAC0531||Transcriptional regulator, RpiR family (NCBI ptt file)||41, 64|
|CAC0717||CAC0717||Predicted membrane protein (NCBI ptt file)||154, 230|
|CAC0748||CAC0748||Nitroreductase family protein (NCBI ptt file)||154, 255|
|CAC0749||CAC0749||HD hydrolase superfamily protein (NCBI ptt file)||154, 291|
|CAC0786||CAC0786||Uncharacterized conserved protein, repeats (NCBI ptt file)||154, 236|
|CAC0787||CAC0787||Uncharacterized conserved protein, repeats (NCBI ptt file)||73, 154|
|CAC0905||CAC0905||Uncharacterized NAD(FAD)-dependent dehydrogenase (NCBI ptt file)||65, 154|
|CAC0906||CAC0906||Alanyl-tRNA synthetase related protein (NCBI ptt file)||113, 154|
|CAC0959||clpB||ATPase with chaperone activity, two ATP-binding domains (NCBI ptt file)||6, 41|
|CAC1004||CAC1004||Predicted membrane protein (NCBI ptt file)||154, 230|
|CAC1474||CAC1474||Proline/glycine betaine ABC transport system, periplasmic component (NCBI ptt file)||41, 177|
|CAC1475||CAC1475||Proline/glycine betaine ABC transport system, ATPase component (NCBI ptt file)||41, 177|
|CAC1553||CAC1553||Membrane associated sensory transduction histidine kinase (with HAMP domain) (NCBI ptt file)||41, 265|
|CAC1665||CAC1665||Predicted amidohydrolase (NCBI ptt file)||41, 113|
|CAC1964||rpsA||Ribosomal protein S1 (NCBI ptt file)||41, 47|
|CAC2052||CAC2052||DNA-dependent RNA polymerase sigma subunit (NCBI ptt file)||41, 64|
|CAC2053||CAC2053||Hypothetical protein (NCBI ptt file)||41, 64|
|CAC2143||sigD||Sigma factor of SigD/WhiG family (NCBI ptt file)||14, 41|
|CAC2144||CAC2144||Uncharacterized protein, YPFA B.subtilis ortholog (NCBI ptt file)||14, 41|
|CAC2145||CAC2145||ATPases involved in chromosome partitioning, MinD family, YLXH B.subtilis ortholog (NCBI ptt file)||14, 41|
|CAC2354||CAC2354||Nifs family aminotransferase (NCBI ptt file)||41, 279|
|CAC2458||CAC2458||2-oxoacid ferredoxin oxidoreductase, beta subunit (NCBI ptt file)||41, 200|
|CAC2542||CAC2542||FAD/FMN-containing dehydrogenase (NCBI ptt file)||41, 265|
|CAC2543||etfA||Electron-transferring flavoprotein large subunit (NCBI ptt file)||41, 363|
|CAC2544||etfB||Electron-transferring flavoprotein small subunit (NCBI ptt file)||41, 291|
|CAC2607||CAC2607||Short-chain alcohol dehydrogenase family protein (NCBI ptt file)||154, 230|
|CAC2625||CAC2625||Predicted membrane protein (NCBI ptt file)||41, 113|
|CAC2638||lonB||Lon-like ATP-dependent protease (NCBI ptt file)||41, 177|
|CAC2737||sbcD||DNA repair exonuclease (NCBI ptt file)||154, 230|
|CAC2763||CAC2763||Membrane assosiated methyl-accepting chemotaxis protein with HAMP domain (NCBI ptt file)||154, 230|
|CAC2824||CAC2824||N-terminal HKD family nuclease fused to DNA/RNA helicases of superfamily II,conserved in Streptomyces (NCBI ptt file)||154, 247|
|CAC2825||CAC2825||Uncharacterized conserved protein, YQXD B.subtilis ortholog (NCBI ptt file)||154, 230|
|CAC2947||topB||Topoisomerase B (NCBI ptt file)||65, 154|
|CAC3030||CAC3030||Hypothetical protein (NCBI ptt file)||41, 265|
|CAC3080||CAC3080||Hypothetical protein (NCBI ptt file)||39, 41|
|CAC3302||gerKC||Spore germination protein GerKC, membrane protein (NCBI ptt file)||154, 230|
|CAC3330||CAC3330||Cytochrome P450 family protein, YBDT B.subtilis ortholog (NCBI ptt file)||154, 300|
|CAC3658||CAC3658||Uncharacterized conserved membrane protein, SapB/MtgC family (NCBI ptt file)||41, 272|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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