Organism : Campylobacter jejuni | Module List :
Regulation information for Cj0162c(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for Cj0162c
Module neighborhood information for Cj0162c
|Gene||Common Name||Description||Module membership|
|Cj0005c||Cj0005c||putative molybdenum containing oxidoreductase (NCBI ptt file)||39, 81|
|Cj0151c||Cj0151c||putative periplasmic protein (NCBI ptt file)||33, 81|
|Cj0162c||Cj0162c||putative periplasmic protein (NCBI ptt file)||56, 81|
|Cj0238||Cj0238||putative integral membrane protein (NCBI ptt file)||56, 94|
|Cj0252||moaC||molybdenum cofactor biosynthesis protein C (NCBI ptt file)||19, 81|
|Cj0355c||Cj0355c||two-component regulator (NCBI ptt file)||56, 170|
|Cj0373||Cj0373||putative D-2-hydroxyacid dehydrogenase (NCBI ptt file)||13, 81|
|Cj0374||Cj0374||hypothetical protein Cj0374 (NCBI ptt file)||13, 56|
|Cj0375||Cj0375||putative lipoprotein (NCBI ptt file)||13, 56|
|Cj0381c||pyrF||orotidine 5'-phosphate decarboxylase (NCBI ptt file)||81, 98|
|Cj0382c||nusB||transcription termination protein (NCBI ptt file)||52, 56|
|Cj0406c||Cj0406c||putative lipoprotein (NCBI ptt file)||81, 161|
|Cj0454c||Cj0454c||putative membrane protein (NCBI ptt file)||37, 81|
|Cj0463||Cj0463||zinc protease-like protein (NCBI ptt file)||56, 120|
|Cj0467||Cj0467||amino-acid ABC transporter integral membrane protein (NCBI ptt file)||56, 81|
|Cj0579c||Cj0579c||hypothetical protein Cj0579c (NCBI ptt file)||81, 116|
|Cj0583||Cj0583||hypothetical protein Cj0583 (NCBI ptt file)||81, 162|
|Cj0610c||Cj0610c||putative periplasmic protein (NCBI ptt file)||39, 81|
|Cj0640c||aspS||aspartyl-tRNA synthetase (NCBI ptt file)||56, 170|
|Cj0643||Cj0643||putative two-component response regulator (NCBI ptt file)||34, 56|
|Cj0645||Cj0645||putative secreted transglycosylase (NCBI ptt file)||81, 145|
|Cj0704||glyQ||glycyl-tRNA synthetase alpha chain (NCBI ptt file)||56, 158|
|Cj0810||nadE||putative NH(3)-dependent NAD(+) synthetase (NCBI ptt file)||81, 130|
|Cj0812||thrC||threonine synthase (NCBI ptt file)||11, 81|
|Cj0883c||Cj0883c||hypothetical protein Cj0883c (NCBI ptt file)||56, 114|
|Cj0917c||cstA||carbon starvation protein A homolog (NCBI ptt file)||56, 158|
|Cj0934c||Cj0934c||putative transmembrane transport protein (NCBI ptt file)||81, 154|
|Cj0956c||thdF||putative thiophene and furan oxidation protein (NCBI ptt file)||81, 96|
|Cj1002c||Cj1002c||hypothetical protein Cj1002c (NCBI ptt file)||37, 81|
|Cj1010||tgt||queuine tRNA-ribosyltransferase (NCBI ptt file)||56, 122|
|Cj1028c||Cj1028c||possible purine/pyrimidine phosphoribosyltransferase (NCBI ptt file)||81, 104|
|Cj1084c||Cj1084c||putative ATP/GTP-binding protein (NCBI ptt file)||56, 65|
|Cj1086c||Cj1086c||hypothetical protein Cj1086c (NCBI ptt file)||63, 81|
|Cj1104||Cj1104||hypothetical proteinCj1104 (NCBI ptt file)||79, 81|
|Cj1216c||Cj1216c||hypothetical protein Cj1216c (NCBI ptt file)||26, 56|
|Cj1258||Cj1258||possible phosphotyrosine protein phosphatase (NCBI ptt file)||38, 81|
|Cj1277c||Cj1277c||putative ABC transporter ATP-binding protein (NCBI ptt file)||56, 69|
|Cj1306c||Cj1306c||hypothetical protein Cj1306c (617 family) (NCBI ptt file)||56, 120|
|Cj1312||Cj1312||possible flagellar protein (NCBI ptt file)||38, 81|
|Cj1320||Cj1320||putative aminotransferase (degT family) (NCBI ptt file)||56, 125|
|Cj1323||Cj1323||hypothetical protein Cj1323 (NCBI ptt file)||18, 81|
|Cj1362||ruvB||holliday junction DNA helicase (NCBI ptt file)||41, 56|
|Cj1379||selB||putative selenocysteine-specific elongation factor (NCBI ptt file)||44, 81|
|Cj1439c||glf||UDP-galactopyranose mutase (NCBI ptt file)||81, 98|
|Cj1455||prfB||peptide chain release factor 2 (NCBI ptt file)||56, 120|
|Cj1467||Cj1467||hypothetical protein Cj1467 (NCBI ptt file)||28, 56|
|Cj1532||Cj1532||possible periplasmic protein (NCBI ptt file)||81, 158|
|Cj1546||Cj1546||hypothetical protein Cj1546 (NCBI ptt file)||56, 158|
|Cj1580c||Cj1580c||putative peptide ABC-transport system ATP-binding protein (NCBI ptt file)||56, 128|
|Cj1583c||Cj1583c||putative peptide ABC-transport system permease protein (NCBI ptt file)||23, 56|
|Cj1584c||Cj1584c||putative peptide ABC-transport system periplasmic peptide-binding protein (NCBI ptt file)||56, 158|
|Cj1677||Cj1677||putative lipoprotein (NCBI)||81, 150|
|Cj1681c||cysQ||cysQ protein homolog (NCBI ptt file)||56, 120|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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