Organism : Campylobacter jejuni | Module List :
Regulation information for Cj0331c(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for Cj0331c
|Gene||Common Name||Description||Module membership|
|Cj0002||dnaN||DNA polymerase III, beta chain (NCBI ptt file)||65, 74|
|Cj0063c||Cj0063c||putative ATP-binding protein (NCBI ptt file)||35, 120|
|Cj0104||atpH||ATP synthase F1 sector delta subunit (NCBI ptt file)||95, 120|
|Cj0113||pal||peptidoglycan associated lipoprotein (omp18) (NCBI ptt file)||91, 120|
|Cj0193c||tig||trigger factor (peptidyl-prolyl cis /trans isomerase, chaperone) (NCBI ptt file)||74, 82|
|Cj0331c||Cj0331c||hypothetical protein Cj0331c (NCBI ptt file)||74, 120|
|Cj0332c||ndk||nucleoside diphosphate kinase (NCBI ptt file)||74, 170|
|Cj0337c||motA||putative flagellar motor proton channel (NCBI ptt file)||74, 142|
|Cj0360||Cj0360||putative phospho-sugar mutase (NCBI ptt file)||74, 102|
|Cj0409||frdA||fumarate reductase flavoprotein subunit (NCBI ptt file)||74, 126|
|Cj0410||frdB||fumarate reductase iron-sulfur protein (NCBI ptt file)||20, 120|
|Cj0441||acpP||acyl carrier protein (NCBI ptt file)||74, 102|
|Cj0463||Cj0463||zinc protease-like protein (NCBI ptt file)||56, 120|
|Cj0531||icd||isocitrate dehydrogenase (NCBI ptt file)||74, 126|
|Cj0534||sucD||succinyl-coA synthetase alpha chain (NCBI ptt file)||74, 126|
|Cj0536||oorA||OORA subunit of 2-oxoglutarate:acceptor oxidoreductase (NCBI ptt file)||74, 126|
|Cj0538||oorC||OORC subunit of 2-oxoglutarate:acceptor oxidoreductase (NCBI ptt file)||74, 102|
|Cj0552||Cj0552||hydrophobic protein (NCBI ptt file)||119, 120|
|Cj0553||Cj0553||putative integral membrane protein (NCBI ptt file)||119, 120|
|Cj0833c||Cj0833c||oxidoreductase (NCBI ptt file)||74, 126|
|Cj0851c||Cj0851c||putative integral membrane protein (NCBI ptt file)||39, 120|
|Cj0852c||Cj0852c||putative integral membrane protein (NCBI ptt file)||74, 120|
|Cj0854c||Cj0854c||putative periplasmic protein (NCBI ptt file)||63, 120|
|Cj0996||ribA||GTP cyclohydrolase II (NCBI ptt file)||120, 155|
|Cj1022c||Cj1022c||putative integral membrane protein (NCBI ptt file)||74, 95|
|Cj1058c||guaB||inosine-5'-monophosphate dehydrogenase (NCBI ptt file)||10, 74|
|Cj1110c||Cj1110c||putative MCP-type signal transduction protein (NCBI ptt file)||74, 102|
|Cj1140||Cj1140||hypothetical protein Cj1140 (NCBI ptt file)||95, 120|
|Cj1265c||hydC||Ni/Fe-hydrogenase B-type cytochrome subunit (NCBI ptt file)||74, 170|
|Cj1266c||hydB||Ni/Fe-hydrogenase large subunit (NCBI ptt file)||10, 74|
|Cj1279c||Cj1279c||putative fibronectin domain-containing lipoprotein (NCBI ptt file)||53, 74|
|Cj1293||Cj1293||possible sugar nucleotide epimerase/dehydratase (NCBI ptt file)||120, 130|
|Cj1294||Cj1294||putative aminotransferase (degT family) (NCBI ptt file)||120, 165|
|Cj1295||Cj1295||hypothetical protein Cj1295 (NCBI ptt file)||120, 165|
|Cj1297||Cj1297||hypotehtical protein Cj1297 (NCBI ptt file)||120, 165|
|Cj1299||acpP2||putative acyl carrier protein (NCBI ptt file)||120, 165|
|Cj1301||Cj1301||hypothetical protein Cj1301 (NCBI ptt file)||120, 132|
|Cj1306c||Cj1306c||hypothetical protein Cj1306c (617 family) (NCBI ptt file)||56, 120|
|Cj1420c||Cj1420c||hypothetical protein Cj1420c (NCBI ptt file)||120, 127|
|Cj1448c||kpsM||putative capsule polysaccharide export system inner membrane protein (NCBI ptt file)||114, 120|
|Cj1455||prfB||peptide chain release factor 2 (NCBI ptt file)||56, 120|
|Cj1487c||ccoP||cb-type cytochrome C oxidase subunit III (NCBI ptt file)||74, 87|
|Cj1488c||ccoQ||cb-type cytochrome C oxidase subunit IV (NCBI ptt file)||74, 87|
|Cj1490c||ccoN||cb-type cytochrome C oxidase subunit I (NCBI ptt file)||74, 126|
|Cj1536c||galU||UTP--glucose-1-phosphate uridylyltransferase (NCBI ptt file)||86, 120|
|Cj1541||Cj1541||hypothetical protein Cj1541 (NCBI ptt file)||119, 120|
|Cj1542||Cj1542||hypothetical protein Cj1542 (NCBI ptt file)||95, 120|
|Cj1624c||sdaA||L-serine dehydratase (NCBI ptt file)||74, 126|
|Cj1625c||sdaC||serine transporter (NCBI ptt file)||74, 126|
|Cj1681c||cysQ||cysQ protein homolog (NCBI ptt file)||56, 120|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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