Organism : Campylobacter jejuni | Module List :
Regulation information for Cj1012c(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for Cj1012c
|Gene||Common Name||Description||Module membership|
|Cj0086c||ung||uracil-DNA glycosylase (NCBI ptt file)||18, 47|
|Cj0133||Cj0133||hypothetical protein Cj0133 (NCBI ptt file)||54, 117|
|Cj0187c||purN||phosphoribosylglycinamide formyltransferase (NCBI ptt file)||46, 117|
|Cj0188c||Cj0188c||hypothetical protein Cj0188c (NCBI ptt file)||7, 47|
|Cj0246c||Cj0246c||putative MCP-domain signal transduction protein (NCBI ptt file)||47, 88|
|Cj0248||Cj0248||hypothetical protein Cj0248 (NCBI ptt file)||47, 88|
|Cj0281c||tal||putative transaldolase (NCBI ptt file)||117, 122|
|Cj0286c||Cj0286c||hypothetical protein Cj0286c (NCBI ptt file)||59, 117|
|Cj0301c||modB||putative molybdenum transport system permease protein (NCBI ptt file)||117, 123|
|Cj0329c||plsX||putative fatty acidphospholipid synthesis protein (VIMSS-AUTO)||117, 151|
|Cj0345||trpE||putative anthranilate synthase component I (NCBI ptt file)||104, 117|
|Cj0346||trpD||anthranilate synthase component II (NCBI ptt file)||104, 117|
|Cj0447||Cj0447||hypothetical protein Cj0447 (NCBI ptt file)||41, 47|
|Cj0468||Cj0468||amino-acid ABC transporter integral membrane protein (NCBI ptt file)||117, 135|
|Cj0505c||Cj0505c||putative aminotransferase (degT family) (NCBI ptt file)||47, 88|
|Cj0517||crcB||CRCB protein homolog (NCBI ptt file)||47, 138|
|Cj0564||Cj0564||putative integral membrane protein (NCBI ptt file)||117, 150|
|Cj0585||folP||putative dihydropteroate synthase (NCBI ptt file)||88, 117|
|Cj0661c||era||GTP-binding protein ERA homolog (NCBI ptt file)||47, 117|
|Cj0777||Cj0777||putative ATP-dependent DNA helicase (NCBI ptt file)||26, 47|
|Cj0939c||Cj0939c||hypothetical protein Cj0939c (NCBI ptt file)||47, 132|
|Cj0951c||Cj0951c||putative MCP-domain signal transduction protein (NCBI ptt file)||47, 122|
|Cj0958c||Cj0958c||putative membrane protein (NCBI ptt file)||26, 47|
|Cj0959c||Cj0959c||hypothetical protein Cj0959c (NCBI ptt file)||46, 47|
|Cj0960c||rnpA||putative ribonuclease P protein component (NCBI ptt file)||47, 135|
|Cj0961c||rpmH||50S ribosomal protein L34 (NCBI ptt file)||47, 103|
|Cj0962||Cj0962||putative acetyltransferase (NCBI ptt file)||47, 60|
|Cj0981c||Cj0981c||transmembrane transport protein (NCBI ptt file)||26, 47|
|Cj0983||Cj0983||putative lipoprotein (NCBI ptt file)||117, 150|
|Cj1011||Cj1011||putative membrane protein (NCBI ptt file)||47, 132|
|Cj1012c||Cj1012c||putative membrane protein (NCBI ptt file)||47, 117|
|Cj1018c||livK||branched-chain amino-acid ABC transport system periplasmic binding protein (NCBI ptt file)||34, 47|
|Cj1033||Cj1033||putative integral membrane component of efflux system (NCBI ptt file)||117, 128|
|Cj1126c||wlaF||putative integral membrane protein (possible oligosaccharyl transferase) (NCBI ptt file)||117, 133|
|Cj1154c||Cj1154c||small hydrophobic protein (NCBI ptt file)||47, 127|
|Cj1168c||Cj1168c||putative integral membrane protein (dedA homolog) (NCBI ptt file)||117, 138|
|Cj1195c||pyrC2||putative dihydroorotase (NCBI ptt file)||47, 162|
|Cj1324||Cj1324||hypothetical protein Cj1324 (NCBI ptt file)||97, 117|
|Cj1325||Cj1325||putative methyltransferase (NCBI)||117, 165|
|Cj1327||neuB2||N-acetylneuraminic acid synthetase (NCBI ptt file)||63, 117|
|Cj1329||Cj1329||putative sugar-phosphate nucleotide transferase (NCBI ptt file)||101, 117|
|Cj1341c||Cj1341c||hypothetical protein Cj1341c (1318 family) (NCBI ptt file)||92, 117|
|Cj1346c||dxr||putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase (NCBI ptt file)||47, 92|
|Cj1349c||Cj1349c||possible fibronectin/fibrinogen-binding protein (NCBI ptt file)||47, 92|
|Cj1392||metC'||putative cystathionine beta-lyase, N-terminus (RefSeq)||16, 47|
|Cj1413c||Cj1413c||possible polysaccharide modification protein (NCBI ptt file)||117, 148|
|Cj1474c||Cj1474c||putative type II protein secretion system D protein (NCBI ptt file)||27, 117|
|Cj1684c||Cj1684c||putative transmembrane transport protein (NCBI ptt file)||17, 117|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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