Module 25 Residual: 0.57Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.57	1.5	890	76	31	20160204

Motifs

Motif 1
	e-value: 1.5
Motif 2
	e-value: 890

Module Plots

Members

MSMEG_6931 RNA polymerase sigma-70 factor	MSMEG_6720 Epoxide hydrolase
MSMEG_3179 Pyridoxamine 5'-phosphate oxidase family protein	MSMEG_4745 ErfK/YbiS/YcfS/YnhG family protein
MSMEG_6151 Alpha/beta hydrolase fold protein (Alpha/beta hydrolase fold-1)	MSMEG_5455 Pe family protein
MSMEG_2893 Ferredoxin:Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-binding region (EC 1.-.-.-) (Oxidoreductase, NAD/FAD-binding)	MSMEG_3340 Uncharacterized protein
MSMEG_2892 Pigment production hydroxylase (EC 1.-.-.-)	MSMEG_6150 4-carboxymuconolactone decarboxylase
MSMEG_5599 Uncharacterized protein	MSMEG_0948 UPF0336 protein MSMEG_0948
MSMEG_1990 Conserved hypothetical cytosolic protein (Uncharacterized protein)	MSMEG_4143 Uncharacterized protein
MSMEG_2796 Integral membrane protein	MSMEG_2017 DNA binding domain, excisionase family (Transcriptional regulator, MerR family protein)
MSMEG_3098 Uncharacterized protein	MSMEG_2016 Molybdate ABC transporter, periplasmic molybdate-binding protein
MSMEG_0191 BadF/BadG/BcrA/BcrD ATPase family protein	MSMEG_2015 ABC-type transporter, permease components (EC 3.6.3.29) (Molybdate ABC transporter, permease protein)
MSMEG_4480 Uncharacterized protein	MSMEG_2014 ABC transporter ATP-binding protein (EC 3.6.3.-) (Molybdenum import ATP-binding protein ModC) (EC 3.6.3.29)
MSMEG_1786 Stas domain, putative	MSMEG_3180 Regulatory protein, MerR (Transcriptional regulator, MerR family protein)
MSMEG_5456 LpqN (MK35 lipoprotein)	MSMEG_2426 Nitrogen regulatory protein P-II
MSMEG_3274 MerR-family protein transcriptional regulator (Transcriptional regulator, MerR family)	MSMEG_2645 Uncharacterized protein
MSMEG_3273 Glutamyl aminopeptidase, M42 family protein	MSMEG_4596 Uncharacterized protein
MSMEG_6721 Uncharacterized protein

Conditions

KO_stationary.phase_rep1

KO_stationary.phase_rep2

KO_log.phase_rep1

Biological.replicate.5.of.7..panaxydol.treatment

Mycobacterium.smegmatis.Spheroplast.induced

Wild.type.rep2.x

Bedaquiline.vs..DMSO.30min

X2XR.rep1

MB100pruR.vs..MB100..rep.3

KO_log.phase_rep2

Wild.type.rep2.y

Plogcy5plogcy3slide110norm

Wild.type.rep1.x

Biological.replicate.7.of.7..falcarinol.treatment

MB100pruR.vs..MB100.rep.4

Biological.replicate.3.of.7..panaxydol.treatment

DglnR_without.vs..with.N_rep2

WT.vs..DamtR.without.N_.dyeswap_rep2

Biological.replicate.1.of.6..kanamycin.treatment

Biological.replicate.7.of.7..ethambutol.treatment

Biological.replicate.6.of.6..kanamycin.treatment

rel.knockout.rep2

rel.knockout.rep1

Biological.replicate.1.of.7..falcarinol.treatment

DglnR_without.vs..with.N_rep1

Biological.replicate.6.of.7..falcarinol.treatment

Bedaquiline.vs..DMSO.15min

DamtR.with.vs..DamtR.without.N_.rep1

Biological.replicate.4.of.6..isoniazid.treatment

Biological.replicate.1.of.6..negative.control

X0.6..vs..50..air.saturation.Replicate.1

WT_log.phase_rep2

X0.6..vs..50..air.saturation.Replicate.2

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1

X0.6..vs..50..air.saturation.Replicate.4

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3

Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.

stphcy5plogcy3slide487norm

Biological.replicate.5.of.6..kanamycin.treatment

Biological.replicate.4.of.6..negative.control

mc2155.vs.Dcrp1.replicate.4

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep4

dcpA.knockout.rep2

WT.vs..DamtR.N.surplus_rep1

Biological.replicate.5.of.6..negative.control

X2.5..vs..50..air.saturation.Replicate.4

X2.5..vs..50..air.saturation.Replicate.5

X3dbfcy3plogcy5slide607norm

Biological.replicate.4.of.7..panaxydol.treatment

X2.5..vs..50..air.saturation.Replicate.1

WT.with.vs..without.N_dye.swap_rep2

WT_stationary.phase_rep1

X4XR.rep2

Biological.replicate.2.of.7..falcarinol.treatment

Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.

Bedaquiline.vs..DMSO.60min

Biological.replicate.6.of.7..ethambutol.treatment

Biological.replicate.7.of.7..panaxydol.treatment

BatchCulture_LBTbroth_ExponentialPhase_Replicate2

dosR.WT_Replicate3

X4dbfcy5plogcy3slide480norm

Wild.type.rep3

Log.phase.cultures.without.induction.of.I.SceI.expression..T.0...Atc.

Biological.replicate.5.of.7..falcarinol.treatment

DglnR_without.vs..with.N_dyeswap_rep2

Log.phase.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

X2XR.rep2

DglnR_without.vs..with.N_dyeswap_rep1

Sub.MIC.INH

Plogcy5plogcy3slide113norm

BatchCulture_LBTbroth_StationaryPhase_Replicate3

BatchCulture_LBTbroth_StationaryPhase_Replicate1

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2

Biological.replicate.3.of.6..negative.control

Biological.replicate.6.of.7..panaxydol.treatment

Bedaquiline.vs..DMSO.120min

Comments