Module 41 Residual: 0.45Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.45	0.000016	0.18	73	32	20160204

Motifs

Motif 1
	e-value: 0.000016
Motif 2
	e-value: 0.18

Module Plots

Members

MSMEG_2383 Glutamate--tRNA ligase (EC 6.1.1.17) (Glutamyl-tRNA synthetase) (GluRS)	MSMEG_1900 D-alanyl-D-alanine carboxypeptidase family protein
MSMEG_5537 Conserved integral membrane protein (Putative transmembrane acyltransferase)	MSMEG_6085 Hydrolase, alpha/beta hydrolase fold family protein
MSMEG_1590 Uncharacterized protein	MSMEG_6086 Antibiotic biosynthesis monooxygenase (Antibiotic biosynthesis monooxygenase domain protein)
MSMEG_6657 Alpha subunit of malonate decarboxylase (Malonate decarboxylase alpha subunit)	MSMEG_4456 Uncharacterized protein
MSMEG_3886 Sec-independent protein translocase protein TatC	MSMEG_3435 Uncharacterized protein
MSMEG_3885 DEAD/DEAH box helicase	MSMEG_0529 Probable serine/threonine-protein kinase PknK (EC 2.7.11.1) (Serine/threonine-protein kinase transcriptional regulatory protein PknK)
MSMEG_3884 Uncharacterized protein	MSMEG_0500 Regulator of polyketide synthase expression, putative
MSMEG_6375 Transporter, major facilitator family protein	MSMEG_6346 Uncharacterized protein
MSMEG_2008 Uncharacterized protein	MSMEG_1589 Uncharacterized protein
MSMEG_2109 Uncharacterized protein	MSMEG_4044 GAF domain protein
MSMEG_5291 Acyl-CoA synthase	MSMEG_5786 Thiredoxin
MSMEG_5292 Uncharacterized protein	MSMEG_2382 5-carboxymethyl-2-hydroxymuconate delta-isomerase (Putative 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase)
MSMEG_5293 Uncharacterized protein	MSMEG_5785 Probable exported protein (Putative conserved exported protein)
MSMEG_1209 Glycosidase	MSMEG_3910 Uncharacterized protein
MSMEG_4056 Conserved secreted protein (NAD-dependent epimerase/dehydratase:dTDP-4-dehydrorhamnose reductase:NmrA-like protein)	MSMEG_2626 Uncharacterized protein
MSMEG_0498 Uncharacterized protein	MSMEG_5288 Putative serine/threonine protein kinase

Conditions

KO_stationary.phase_rep1

Biological.replicate.5.of.7..falcarinol.treatment

WT.vs..DamtR.without.N_rep1

Biological.replicate.2.of.7..panaxydol.treatment

Biological.replicate.4.of.6..negative.control

dcpA.knockout.rep2

Mycobacterium.smegmatis.Spheroplast.induced

Biological.replicate.4.of.7..ethambutol.treatment

Biological.replicate.1.of.6..negative.control

dosR.WT_Replicate3

dosR.WT_Replicate1

KO_log.phase_rep2

Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

Plogcy5plogcy3slide110norm

Wild.type.rep1.x

Wild.type.rep1.y

MB100pruR.vs..MB100.rep.4

Biological.replicate.3.of.7..panaxydol.treatment

Biological.replicate.6.of.6..negative.control

DglnR_without.vs..with.N_rep2

WT.vs..DamtR.without.N_.dyeswap_rep2

Biological.replicate.1.of.6..kanamycin.treatment

Biological.replicate.1.of.6..isoniazid.treatment

Biological.replicate.7.of.7..ethambutol.treatment

mc2155.pMind..vs.mc2155.pMind.6189.replicate.1

Biological.replicate.1.of.7..ethambutol.treatment

mc2155.pMind..vs.mc2155.pMind.6189.replicate.4

Biological.replicate.3.of.7..falcarinol.treatment

MB100pruR.vs..MB100.rep.2

Biological.replicate.6.of.7..panaxydol.treatment

WT.vs..DamtR.without.N_rep2

M..smegmatis.Acid.NO.treated

Biological.replicate.3.of.7..ethambutol.treatment

Biological.replicate.3.of.6..isoniazid.treatment

Biological.replicate.2.of.6..kanamycin.treatment

X0.6..vs..50..air.saturation.Replicate.5

X0.6..vs..50..air.saturation.Replicate.4

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3

mc2155.vs.Dcrp1.replicate.2

Slow.vs..Fast.Replicate.3

Biological.replicate.2.of.7..ethambutol.treatment

Biological.replicate.3.of.6..negative.control

Biological.replicate.5.of.7..panaxydol.treatment

WT.vs..DamtR.N.surplus_rep1

WT_log.phase_rep2

X3dbfcy3plogcy5slide607norm

WT_log.phase_rep1

X4dbfcy5plogcy3slide480norm

WT_stationary.phase_rep2

Log.phase.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

Biological.replicate.4.of.6..isoniazid.treatment

Biological.replicate.2.of.6..isoniazid.treatment

Slow.vs..Fast.Replicate.5

Bedaquiline.vs..DMSO.60min

Biological.replicate.5.of.6..isoniazid.treatment

WT.vs..DglnR.N_starvation_dye.swap_rep2

Biological.replicate.7.of.7..panaxydol.treatment

BatchCulture_LBTbroth_ExponentialPhase_Replicate2

X3dbfcy5plogcy3slide603norm

X4dbfcy5plogcy3slide901norm

BatchCulture_LBTbroth_ExponentialPhase_Replicate4

WT.vs..DamtR.N.surplus_.dyeswap_rep1

WT.vs..DglnR.N_starvation_rep1

WT.vs..DamtR.N.surplus_dyeswap_rep2

DglnR_without.vs..with.N_dyeswap_rep2

X2XR.rep1

DglnR_without.vs..with.N_dyeswap_rep1

Biological.replicate.2.of.6..negative.control

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep2

Plogcy5plogcy3slide113norm

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2

Biological.replicate.6.of.7..falcarinol.treatment

Comments