Module 113 Residual: 0.57Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.57	0.000000000017	0.000024	79	31	20160204

Motifs

Motif 1
	e-value: 0.000000000017
Motif 2
	e-value: 0.000024

Module Plots

Members

MSMEG_3311 Acyl carrier protein	MSMEG_6702 6-oxohexanoate dehydrogenase, succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.16) ([NADP+] succinate-semialdehyde dehydrogenase)
MSMEG_5468 Conserved transmembrane protein (Uncharacterized protein)	MSMEG_6701 Amino acid permease (Amino acid permease-associated region)
MSMEG_4645 Alpha oxoglutarate ferredoxin oxidoreductase, beta subunit	MSMEG_6700 Regulatory protein (Transcriptional regulator, GntR family)
MSMEG_4646 Pyruvate flavodoxin/ferredoxin oxidoreductase-like protein (EC 1.2.7.3) (Pyruvate synthase)	MSMEG_6123 ABC transporter, membrane spanning protein (Binding-protein-dependent transport systems inner membrane component) (EC 3.6.3.24)
MSMEG_4738 Uncharacterized protein	MSMEG_6122 ABC transporter, membrane spanning protein (Binding-protein-dependent transport systems inner membrane component) (EC 3.6.3.23)
MSMEG_4712 Pyruvate dehydrogenase E1 component (Alpha subunit) PdhA (EC 1.2.4.1) (Pyruvate dehydrogenase E1 component, alpha subunit) (EC 1.2.4.1)	MSMEG_6121 Dipeptide transport ATP-binding protein DppD
MSMEG_4711 Pyruvate dehydrogenase E1 component (Beta subunit) PdhB (Pyruvate dehydrogenase E1 component subunit beta) (EC 1.2.4.1)	MSMEG_5473 Transporter
MSMEG_1005 Methyltransferase type 11	MSMEG_5474 Universal stress protein family protein (UspA domain protein)
MSMEG_3539 Uncharacterized protein	MSMEG_6126 D-isomer specific 2-hydroxyacid dehydrogenase
MSMEG_2532 Dehydroquinase dehydratase, type II (EC 4.2.1.10)	MSMEG_6124 Extracellular solute-binding protein family 5 (Putative ABC transporter periplasmic oligopeptide-binding protein)
MSMEG_6315 Lipoprotein LpqH (Uncharacterized protein)	MSMEG_0935 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (BPG-dependent PGAM) (PGAM) (Phosphoglyceromutase) (dPGM) (EC 5.4.2.11)
MSMEG_0799 Uncharacterized protein	MSMEG_4707 Alpha/beta hydrolase fold protein (Non-heme bromoperoxidase BPO-A2) (EC 1.11.1.-)
MSMEG_6039 3-ketosteroid-9-alpha-hydroxylase reductase subunit (EC 1.17.1.-) (Rieske-type oxygenase) (RO)	MSMEG_4594 Uncharacterized protein
MSMEG_2412 Pyruvate carboxylase (EC 6.4.1.1)	MSMEG_4880 Methylmalonyl-CoA mutase C-terminal domain protein
MSMEG_6313 Queuine tRNA-ribosyltransferase (EC 2.4.2.29) (Guanine insertion enzyme) (tRNA-guanine transglycosylase)	MSMEG_5957 GDP-mannose 6-dehydrogenase AlgD (EC 1.1.1.132)
MSMEG_6120 Oligopeptide/dipeptide ABC transporter, ATPase subunit (EC 3.6.3.23) (Peptide transport system ATP-binding protein)

Conditions

KO_stationary.phase_rep1

Bedaquiline.vs..DMSO.30min

Biological.replicate.5.of.7..falcarinol.treatment

WT.vs..DamtR.without.N_rep1

Bedaquiline.vs..DMSO.15min

M..smegmatis.Acid.NO.treated

dosR.WT_Replicate4

dcpA.knockout.rep1

X2XR.rep1

dosR.WT_Replicate3

Tet.CarD.vs.Control..Replicates.1..2..and.3.

KO_log.phase_rep2

Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

Plogcy5plogcy3slide110norm

Wild.type.rep1.y

MB100pruR.vs..MB100.rep.4

Biological.replicate.3.of.7..panaxydol.treatment

WT.vs..DamtR.without.N_.dyeswap_rep1

WT.vs..DamtR.without.N_.dyeswap_rep2

MB100pruR.vs..MB100.rep.1

Biological.replicate.1.of.6..isoniazid.treatment

Biological.replicate.1.of.7..ethambutol.treatment

Biological.replicate.6.of.6..kanamycin.treatment

rel.knockout.rep1

Bedaquiline.vs..DMSO..45min

Biological.replicate.6.of.7..panaxydol.treatment

Biological.replicate.1.of.6..negative.control

WT.vs..DglnR.N_starvation_dye.swap_rep2

Biological.replicate.3.of.7..ethambutol.treatment

Biological.replicate.3.of.6..isoniazid.treatment

WT_log.phase_rep2

X0.6..vs..50..air.saturation.Replicate.2

Slow.vs..Fast.Replicate.2

WT.vs..DamtR.N.surplus_rep1

Biological.replicate.5.of.6..kanamycin.treatment

Biological.replicate.7.of.7..panaxydol.treatment

Biological.replicate.1.of.7..panaxydol.treatment

mc2155.vs.Dcrp1.replicate.4

Biological.replicate.3.of.6..negative.control

Biological.replicate.5.of.7..panaxydol.treatment

Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.

Sub.MIC.INH

Biological.replicate.2.of.7..falcarinol.treatment

stphcy5plogcy3slide580norm

X3dbfcy5plogcy3slide601norm

Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.

X3dbfcy3plogcy5slide607norm

WT_log.phase_rep1

X2.5..vs..50..air.saturation.Replicate.1

X2.5..vs..50..air.saturation.Replicate.2

X2.5..vs..50..air.saturation.Replicate.3

WT_stationary.phase_rep1

Biological.replicate.6.of.6..isoniazid.treatment

DamtR.with.vs..DamtR.without.N_dyeswap_.rep1

Biological.replicate.5.of.7..ethambutol.treatment

Slow.vs..Fast.Replicate.4

Slow.vs..Fast.Replicate.5

Biological.replicate.4.of.7..falcarinol.treatment

Biological.replicate.6.of.7..ethambutol.treatment

Slow.vs..Fast.Replicate.3

Biological.replicate.5.of.6..negative.control

X3dbfcy5plogcy3slide603norm

BatchCulture_LBTbroth_ExponentialPhase_Replicate1

mc2155.pMind..vs.mc2155.pMind.6189.replicate.2

mc2155.pMind..vs.mc2155.pMind.6189.replicate.3

WT.vs..DamtR.N.surplus_.dyeswap_rep1

X4dbfcy3plogcy5slide903norm

Log.phase.cultures.without.induction.of.I.SceI.expression..T.0...Atc.

WT.vs..DamtR.N.surplus_dyeswap_rep2

Log.phase.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

mc2155.pMind..vs.mc2155.pMind.6189.replicate.1

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep1

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep3

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep2

BatchCulture_LBTbroth_StationaryPhase_Replicate2

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep4

BatchCulture_LBTbroth_StationaryPhase_Replicate1

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1

Biological.replicate.1.of.6..kanamycin.treatment

Comments