Module 124 Residual: 0.55
Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Residual Motif 1 e-value Motif 2 e-value Conditions Genes version
0.55 1.2e-19 180 82 33 20160204
Motif 1
e-value: 1.2e-19
e-value: 180
MSMEG_1951 Conserved domain protein (Uncharacterized protein) MSMEG_4785 MCE family protein (Mce-family protein mce1f)
MSMEG_1950 Uncharacterized protein MSMEG_4787 Virulence factor Mce family protein (Virulence factor mce family protein)
MSMEG_5556 MFS permease MSMEG_4786 Virulence factor Mce family protein (Virulence factor mce family protein)
MSMEG_2799 Phospho-2-dehydro-3-deoxyheptonate aldolase (EC 2.5.1.54) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase) (DAHP synthase) (Phospho-2-keto-3-deoxyheptonate aldolase) MSMEG_4479 Uncharacterized protein
MSMEG_3686 Uncharacterized protein MSMEG_5621 Acyl-CoA dehydrogenase (Putative acyl-CoA dehydrogenase)
MSMEG_2127 Uncharacterized protein MSMEG_5623 L-carnitine dehydratase/bile acid-inducible protein F (EC 2.8.3.16)
MSMEG_6118 IclR-family protein transcriptional regulator (IclR-family transcriptional regulator) MSMEG_5622 Acyl-CoA dehydrogenase FadE17_2 (Putative acyl-CoA dehydrogenase)
MSMEG_3228 Acyl-CoA thioesterase II (Acyl-CoA thioesterase II TesB1) MSMEG_5624 Oxidoreductase, short chain dehydrogenase/reductase family protein (Short-chain dehydrogenase/reductase SDR) (EC 1.1.1.100)
MSMEG_2511 Siderophore utilization protein (Siderophore-interacting protein) MSMEG_1948 Uncharacterized protein
MSMEG_6925 Uncharacterized protein MSMEG_1522 30S ribosomal protein S11
MSMEG_6070 50S ribosomal protein L31 MSMEG_3851 LppI (LppI protein)
MSMEG_2672 Acyl-CoA synthase (Fatty-acid-CoA ligase FadD23) MSMEG_1521 30S ribosomal protein S13
MSMEG_2841 Putative monooxygenase MSMEG_6559 Uncharacterized protein
MSMEG_4266 Uncharacterized protein MSMEG_2477 Cyclopentanol dehydrogenase (EC 1.1.1.163)
MSMEG_3610 Uncharacterized protein MSMEG_1523 30S ribosomal protein S4
MSMEG_4477 Hydrolase, alpha/beta hydrolase fold family protein (Lignin peroxidase LipJ) MSMEG_3837 Uncharacterized protein
MSMEG_3677 Serine/threonine protein kinase (Serine/threonine-protein kinase pknF) (EC 2.7.11.1)
KO_stationary.phase_rep2
WT.vs..DglnR.N_starvation_rep2
WT.vs..DamtR.without.N_rep1
Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.
X4XR.rep1
Bedaquiline.vs..DMSO.15min
Wild.type.rep2.x
Biological.replicate.3.of.7..falcarinol.treatment
Biological.replicate.3.of.7..ethambutol.treatment
MB100pruR.vs..MB100..rep.3
KO_log.phase_rep1
Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.
Biological.replicate.7.of.7..falcarinol.treatment
Biological.replicate.3.of.7..panaxydol.treatment
MB100pruR.vs..MB100.rep.2
MB100pruR.vs..MB100.rep.1
Biological.replicate.7.of.7..ethambutol.treatment
rel.knockout.rep2
rel.knockout.rep1
Bedaquiline.vs..DMSO..45min
Biological.replicate.6.of.6..negative.control
Biological.replicate.6.of.7..falcarinol.treatment
M..smegmatis.Acid.NO.treated
JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep3
DamtR.with.vs..DamtR.without.N_.rep2
X0.6..vs..50..air.saturation.Replicate.3
X0.6..vs..50..air.saturation.Replicate.2
X0.6..vs..50..air.saturation.Replicate.4
WT.vs..DamtR.N.surplus_rep1
mc2155.vs.Dcrp1.replicate.2
stphcy5plogcy3slide487norm
Biological.replicate.5.of.6..kanamycin.treatment
stphcy3plogcy5slide581norm
WT.vs..DamtR.N.surplus_rep2
X4dbfcy5plogcy3slide901norm
dcpA.knockout.rep2
dcpA.knockout.rep1
Biological.replicate.2.of.7..falcarinol.treatment
X3dbfcy5plogcy3slide603norm
Biological.replicate.5.of.6..negative.control
X3dbfcy5plogcy3slide601norm
Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.
X3dbfcy3plogcy5slide607norm
WT_log.phase_rep1
Biological.replicate.4.of.7..panaxydol.treatment
X2.5..vs..50..air.saturation.Replicate.1
X2.5..vs..50..air.saturation.Replicate.2
WT_stationary.phase_rep2
WT_stationary.phase_rep1
Biological.replicate.6.of.6..isoniazid.treatment
Biological.replicate.2.of.7..ethambutol.treatment
Biological.replicate.4.of.6..isoniazid.treatment
Biological.replicate.5.of.7..ethambutol.treatment
Tet.CarD.vs.Control..Replicates.1..2..and.3.
Slow.vs..Fast.Replicate.5
dosR.WT_Replicate3
Bedaquiline.vs..DMSO.60min
Biological.replicate.5.of.6..isoniazid.treatment
Slow.vs..Fast.Replicate.1
Biological.replicate.6.of.7..ethambutol.treatment
Biological.replicate.7.of.7..panaxydol.treatment
BatchCulture_LBTbroth_ExponentialPhase_Replicate3
X4dbfcy5plogcy3slide480norm
BatchCulture_LBTbroth_ExponentialPhase_Replicate1
Wild.type.rep3
BatchCulture_LBTbroth_ExponentialPhase_Replicate4
WT.vs..DamtR.N.surplus_dyeswap_rep2
WT.vs..DglnR.N_starvation_rep1
Log.phase.cultures.without.induction.of.I.SceI.expression..T.0...Atc.
WT.with.vs..without.N_rep1
Log.phase.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.
Biological.replicate.4.of.7..ethambutol.treatment
Biological.replicate.5.of.7..falcarinol.treatment
Wild.type.rep1.y
BatchCulture_LBTbroth_StationaryPhase_Replicate4
Plogcy5plogcy3slide113norm
BatchCulture_LBTbroth_StationaryPhase_Replicate1
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1
WT.vs..DglnR.N_starvation_dye.swap_rep1
Bedaquiline.vs..DMSO.120min
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