Module 154 Residual: 0.54Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.54	0.000000000019	61	77	31	20160204

Motifs

Motif 1
	e-value: 0.000000000019
Motif 2
	e-value: 61

Module Plots

Members

MSMEG_0944 DNA binding domain, excisionase family protein	MSMEG_6818 Dehydrogenase (FAD-dependent pyridine nucleotide-disulfide oxidoreductase)
MSMEG_5759 PE-PPE, C-terminal domain protein (Pe family protein)	MSMEG_5760 GntR-family protein regulator
MSMEG_6092 Lsr2 protein (Protein lsr2)	MSMEG_1926 Phosphoglycerate mutase family protein (Putative phosphoglycerate mutase gpm2) (EC 5.4.2.-)
MSMEG_3336 Hydrolase	MSMEG_1927 Cobyrinic Acid a,c-diamide synthase
MSMEG_5462 RarD protein (RarD protein, DMT superfamily transporter) (EC 5.3.1.1)	MSMEG_1924 GCN5-related N-acetyltransferase (N-acetyltransferase Ats1) (EC 2.3.1.-)
MSMEG_4137 Uncharacterized protein	MSMEG_1925 Isochorismate synthase DhbC (EC 5.4.4.2)
MSMEG_0359 Alpha-(1->3)-arabinofuranosyltransferase (EC 2.4.2.47) (Arabinofuranan 3-O-arabinosyltransferase)	MSMEG_6141 D-amino acid aminohydrolase (EC 3.5.1.82) (N-acyl-D-glutamate amidohydrolase)
MSMEG_0688 Aspartate aminotransferase	MSMEG_6008 Acetyl-CoA acetyltransferase (Putative acetyl-COA acetyltransferase Fada6 (Acetoacetyl-COA thiolase)) (EC 2.3.1.-)
MSMEG_6139 Putative HTH-type transcriptional regulator (Transcriptional regulatory protein (Probably TetR-family))	MSMEG_6009 HTH-type transcriptional repressor KstR2
MSMEG_2971 Regulatory protein	MSMEG_0361 Glycosyl hydrolase family protein 3 (Uncharacterized protein)
MSMEG_5878 Cutinase (EC 3.1.1.74)	MSMEG_0360 Small secreted protein (Uncharacterized protein)
MSMEG_6817 RNA polymerase ECF-subfamily sigma factor (RNA polymerase sigma factor, sigma-70 family protein)	MSMEG_4065 Feruloyl-CoA synthetase
MSMEG_6010 Uncharacterized protein	MSMEG_0752 Fructose-bisphosphate aldolase (Fructose-bisphosphate aldolase, class II) (EC 4.1.2.13)
MSMEG_4268 Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Transmembrane cytochrome C oxidase (Subunit II) ctaC (Transmembrane cytochrome C oxidase subunit II ctaC))	MSMEG_2700 Uncharacterized protein
MSMEG_1160 ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component (Putative ABC transporter component B)	MSMEG_1159 ABC transporter component A (ABC-type nitrate/sulfonate/bicarbonate transport system periplasmic components-like protein)
MSMEG_1161 Binding-protein-dependent transport systems inner membrane component (Taurine transport system permease protein TauC)

Conditions

Bedaquiline.vs..DMSO.30min

Biological.replicate.5.of.7..falcarinol.treatment

WT.vs..DamtR.without.N_rep1

Biological.replicate.2.of.7..panaxydol.treatment

X3dbfcy5plogcy3slide603norm

Biological.replicate.5.of.6..isoniazid.treatment

Wild.type.rep3

Biological.replicate.1.of.6..negative.control

dosR.WT_Replicate3

dosR.WT_Replicate1

KO_log.phase_rep2

KO_log.phase_rep1

dosR.WT_Replicate4

Biological.replicate.7.of.7..falcarinol.treatment

Biological.replicate.3.of.7..panaxydol.treatment

Biological.replicate.6.of.6..negative.control

WT.vs..DamtR.without.N_.dyeswap_rep1

Biological.replicate.1.of.6..kanamycin.treatment

Biological.replicate.7.of.7..ethambutol.treatment

Biological.replicate.1.of.7..ethambutol.treatment

Biological.replicate.6.of.6..kanamycin.treatment

rel.knockout.rep2

rel.knockout.rep1

Biological.replicate.1.of.7..falcarinol.treatment

Biological.replicate.3.of.7..falcarinol.treatment

Biological.replicate.6.of.7..falcarinol.treatment

DamtR.with.vs..DamtR.without.N_.rep1

Biological.replicate.4.of.6..kanamycin.treatment

DamtR.with.vs..DamtR.without.N_.rep2

X0.6..vs..50..air.saturation.Replicate.1

X3dbfcy5plogcy3slide601norm

X0.6..vs..50..air.saturation.Replicate.5

X0.6..vs..50..air.saturation.Replicate.4

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3

mc2155.vs.Dcrp1.replicate.2

mc2155.vs.Dcrp1.replicate.3

mc2155.vs.Dcrp1.replicate.1

Biological.replicate.1.of.7..panaxydol.treatment

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep4

dcpA.knockout.rep2

Biological.replicate.2.of.7..falcarinol.treatment

WT_log.phase_rep2

X2.5..vs..50..air.saturation.Replicate.5

Biological.replicate.2.of.7..ethambutol.treatment

WT_log.phase_rep1

Biological.replicate.4.of.7..panaxydol.treatment

X2.5..vs..50..air.saturation.Replicate.1

DamtR.with.vs..DamtR.without.N_dyeswap_.rep1

Biological.replicate.3.of.6..kanamycin.treatment

Biological.replicate.5.of.7..ethambutol.treatment

Slow.vs..Fast.Replicate.4

Slow.vs..Fast.Replicate.5

Biological.replicate.4.of.7..falcarinol.treatment

WT.vs..DglnR.N_starvation_dye.swap_rep1

WT.vs..DglnR.N_starvation_dye.swap_rep2

Biological.replicate.7.of.7..panaxydol.treatment

BatchCulture_LBTbroth_ExponentialPhase_Replicate2

Biological.replicate.5.of.6..negative.control

X4dbfcy5plogcy3slide480norm

BatchCulture_LBTbroth_ExponentialPhase_Replicate1

mc2155.pMind..vs.mc2155.pMind.6189.replicate.3

X4dbfcy5plogcy3slide901norm

WT.vs..DamtR.N.surplus_dyeswap_rep2

WT.with.vs..without.N_rep2

WT.vs..DglnR.N_starvation_rep2

X2XR.rep1

mc2155.pMind..vs.mc2155.pMind.6189.replicate.1

Wild.type.rep1.y

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep2

Plogcy5plogcy3slide113norm

BatchCulture_LBTbroth_StationaryPhase_Replicate3

BatchCulture_LBTbroth_StationaryPhase_Replicate1

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3

Biological.replicate.5.of.6..kanamycin.treatment

X4dbfcy3plogcy5slide903norm

Biological.replicate.6.of.7..panaxydol.treatment

Bedaquiline.vs..DMSO.120min

Comments