Module 243 Residual: 0.46Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.46	0.0000000000000023	0.00017	84	19	20160204

Motifs

Motif 1
	e-value: 0.0000000000000023
Motif 2
	e-value: 0.00017

Module Plots

Members

MSMEG_2260 Putative transcriptional regulator	MSMEG_5662 DNA-binding response regulator PrrA (Two component transcriptional regulator, winged helix family)
MSMEG_2261 Uncharacterized protein	MSMEG_6666 Uncharacterized protein
MSMEG_1757 ATP-dependent DNA helicase (DEAD/DEAH box helicase)	MSMEG_1638 Roadblock/LC7 domain protein (Roadblock/LC7 family protein)
MSMEG_1756 DNA glycosylase/endonuclease (EC 4.2.99.18) (Endonuclease VIII and dna n-glycosylase with an ap lyase activity)	MSMEG_1639 Uncharacterized protein
MSMEG_1759 Uncharacterized protein	MSMEG_1637 Histidine kinase (EC 2.7.13.3)
MSMEG_5659 ABC transporter, ATP-binding protein	MSMEG_2341 Uncharacterized protein
MSMEG_1170 Conserved domain protein	MSMEG_1640 ATP/GTP binding protein (ATP/GTP-binding protein)
MSMEG_5661 ABC transporter ATP-binding protein (Putative multidrug ABC transporter, fused permease and ATP-binding protein)	MSMEG_5116 Uncharacterized protein
MSMEG_5660 ABC transporter (ABC transporter ATP-binding protein)	MSMEG_5114 Acyl-CoA synthase (Fatty-acid-CoA ligase FadD36)
MSMEG_5663 Sensor-type histidine kinase PrrB (EC 2.7.13.3) (Sensor-type histidine kinase prrB)

Conditions

KO_stationary.phase_rep1

Biological.replicate.5.of.7..falcarinol.treatment

WT.vs..DamtR.without.N_rep1

Biological.replicate.2.of.7..panaxydol.treatment

Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.

WT.vs..DamtR.without.N_rep2

Mycobacterium.smegmatis.Spheroplast.induced

dosR.WT_Replicate4

Biological.replicate.3.of.7..falcarinol.treatment

Biological.replicate.1.of.6..negative.control

MB100pruR.vs..MB100..rep.3

dosR.WT_Replicate1

Biological.replicate.2.of.6..kanamycin.treatment

Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

Plogcy5plogcy3slide110norm

Wild.type.rep1.x

Biological.replicate.7.of.7..falcarinol.treatment

Biological.replicate.3.of.7..panaxydol.treatment

Biological.replicate.6.of.7..ethambutol.treatment

WT.vs..DamtR.without.N_.dyeswap_rep1

WT.vs..DamtR.without.N_.dyeswap_rep2

MB100pruR.vs..MB100.rep.1

Biological.replicate.7.of.7..ethambutol.treatment

Biological.replicate.6.of.6..kanamycin.treatment

rel.knockout.rep2

rel.knockout.rep1

Bedaquiline.vs..DMSO..45min

MB100pruR.vs..MB100.rep.2

Biological.replicate.6.of.7..panaxydol.treatment

Bedaquiline.vs..DMSO.15min

M..smegmatis.Acid.NO.treated

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep3

Biological.replicate.3.of.6..isoniazid.treatment

WT.vs..DglnR.N_starvation_dye.swap_rep1

X0.6..vs..50..air.saturation.Replicate.1

WT_log.phase_rep2

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1

X0.6..vs..50..air.saturation.Replicate.4

Biological.replicate.2.of.7..falcarinol.treatment

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep2

Plogcy5plogcy3slide113norm

Biological.replicate.7.of.7..panaxydol.treatment

Biological.replicate.1.of.7..panaxydol.treatment

Biological.replicate.5.of.7..panaxydol.treatment

Biological.replicate.5.of.6..negative.control

X3dbfcy5plogcy3slide601norm

X2.5..vs..50..air.saturation.Replicate.5

X3dbfcy3plogcy5slide607norm

WT_log.phase_rep1

Biological.replicate.4.of.7..panaxydol.treatment

X2.5..vs..50..air.saturation.Replicate.2

WT_stationary.phase_rep2

WT_stationary.phase_rep1

Biological.replicate.6.of.6..isoniazid.treatment

X4XR.rep2

Biological.replicate.2.of.7..ethambutol.treatment

mc2155.vs.Dcrp1.replicate.3

Slow.vs..Fast.Replicate.5

Bedaquiline.vs..DMSO.60min

Biological.replicate.4.of.7..falcarinol.treatment

Slow.vs..Fast.Replicate.1

Slow.vs..Fast.Replicate.2

Slow.vs..Fast.Replicate.3

Biological.replicate.4.of.6..negative.control

X3dbfcy5plogcy3slide603norm

Biological.replicate.5.of.6..kanamycin.treatment

Biological.replicate.3.of.6..kanamycin.treatment

BatchCulture_LBTbroth_ExponentialPhase_Replicate4

WT.vs..DamtR.N.surplus_.dyeswap_rep1

X4dbfcy3plogcy5slide903norm

WT.vs..DglnR.N_starvation_rep2

X2XR.rep1

X2XR.rep2

Biological.replicate.5.of.6..isoniazid.treatment

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep1

BatchCulture_LBTbroth_StationaryPhase_Replicate4

Biological.replicate.4.of.7..ethambutol.treatment

BatchCulture_LBTbroth_StationaryPhase_Replicate2

BatchCulture_LBTbroth_StationaryPhase_Replicate3

BatchCulture_LBTbroth_StationaryPhase_Replicate1

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1

Biological.replicate.1.of.6..kanamycin.treatment

Biological.replicate.6.of.7..falcarinol.treatment

Comments