Module 398 Residual: 0.50Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.50	0.06	0.039	80	28	20160204

Motifs

Motif 1
	e-value: 0.06
Motif 2
	e-value: 0.039

Module Plots

Members

MSMEG_4545 ABC transporter solute-binding protein (Bacterial extracellular solute-binding protein, family protein 5)	MSMEG_6123 ABC transporter, membrane spanning protein (Binding-protein-dependent transport systems inner membrane component) (EC 3.6.3.24)
MSMEG_0374 Glycolate oxidase subunit	MSMEG_6122 ABC transporter, membrane spanning protein (Binding-protein-dependent transport systems inner membrane component) (EC 3.6.3.23)
MSMEG_2844 ABC transporter ATP binding protein (ABC transporter, ATP-binding protein)	MSMEG_6121 Dipeptide transport ATP-binding protein DppD
MSMEG_2845 ABC transporter permease protein (Binding-protein-dependent transport systems inner membrane component)	MSMEG_6120 Oligopeptide/dipeptide ABC transporter, ATPase subunit (EC 3.6.3.23) (Peptide transport system ATP-binding protein)
MSMEG_2846 ABC transporter permease protein (Binding-protein-dependent transport systems inner membrane component)	MSMEG_6124 Extracellular solute-binding protein family 5 (Putative ABC transporter periplasmic oligopeptide-binding protein)
MSMEG_2847 Bacterial extracellular solute-binding protein, family protein 5	MSMEG_3435 Uncharacterized protein
MSMEG_5395 Sensor protein KdpD (EC 2.7.13.3)	MSMEG_5820 Uncharacterized protein
MSMEG_5394 Potassium-transporting ATPase KdpC subunit (ATP phosphohydrolase [potassium-transporting] C chain) (Potassium-binding and translocating subunit C) (Potassium-translocating ATPase C chain)	MSMEG_5389 LysA protein
MSMEG_5396 KDP operon transcriptional regulatory protein KdpE (Two-component response regulator, KdpE)	MSMEG_1092 Urease accessory protein UreF (Urease accessory protein UreF 1)
MSMEG_5391 Uncharacterized protein	MSMEG_1093 Urease (EC 3.5.1.5)
MSMEG_5887 Intersectin-EH binding protein Ibp1	MSMEG_1091 Urease accessory protein UreE 1 (Urease accessory protein ureE 1)
MSMEG_5393 Potassium-transporting ATPase ATP-binding subunit (EC 3.6.3.12) (ATP phosphohydrolase [potassium-transporting] B chain) (Potassium-binding and translocating subunit B) (Potassium-translocating ATPase B chain)	MSMEG_1096 Urease accessory protein UreD
MSMEG_5392 Potassium-transporting ATPase potassium-binding subunit (ATP phosphohydrolase [potassium-transporting] A chain) (Potassium-binding and translocating subunit A) (Potassium-translocating ATPase A chain)	MSMEG_1094 Urease subunit alpha (EC 3.5.1.5) (Urea amidohydrolase subunit alpha)
MSMEG_5886 Enoyl-CoA hydratase	MSMEG_1095 Urease accessory protein UreG

Conditions

KO_stationary.phase_rep1

KO_stationary.phase_rep2

Biological.replicate.5.of.7..falcarinol.treatment

WT.vs..DamtR.without.N_rep1

Biological.replicate.2.of.7..panaxydol.treatment

Biological.replicate.3.of.6..kanamycin.treatment

WT.vs..DamtR.without.N_rep2

Mycobacterium.smegmatis.Spheroplast.induced

X4XR.rep1

Bedaquiline.vs..DMSO.30min

Biological.replicate.1.of.6..negative.control

dosR.WT_Replicate1

KO_log.phase_rep1

Plogcy5plogcy3slide110norm

Wild.type.rep1.x

Biological.replicate.7.of.7..falcarinol.treatment

DglnR_without.vs..with.N_rep2

Biological.replicate.6.of.6..negative.control

Biological.replicate.1.of.6..isoniazid.treatment

mc2155.pMind..vs.mc2155.pMind.6189.replicate.1

Biological.replicate.1.of.7..ethambutol.treatment

Biological.replicate.3.of.7..falcarinol.treatment

rel.knockout.rep1

MB100pruR.vs..MB100.rep.2

Biological.replicate.6.of.7..panaxydol.treatment

Bedaquiline.vs..DMSO.15min

M..smegmatis.Acid.NO.treated

WT.vs..DamtR.N.surplus_dyeswap_rep2

Sub.MIC.INH

X0.6..vs..50..air.saturation.Replicate.5

WT.vs..DamtR.N.surplus_rep2

WT.vs..DamtR.N.surplus_rep1

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep2

mc2155.vs.Dcrp1.replicate.2

stphcy5plogcy3slide487norm

mc2155.vs.Dcrp1.replicate.1

Biological.replicate.1.of.7..panaxydol.treatment

mc2155.vs.Dcrp1.replicate.4

Biological.replicate.3.of.6..negative.control

dcpA.knockout.rep1

Biological.replicate.2.of.6..isoniazid.treatment

Biological.replicate.2.of.7..falcarinol.treatment

Plogcy5plogcy3slide111norm

stphcy5plogcy3slide580norm

WT_log.phase_rep2

X2.5..vs..50..air.saturation.Replicate.5

Biological.replicate.2.of.7..ethambutol.treatment

DglnR_without.vs..with.N_rep1

X2.5..vs..50..air.saturation.Replicate.1

X2.5..vs..50..air.saturation.Replicate.2

WT.with.vs..without.N_dye.swap_rep2

WT_stationary.phase_rep2

WT_stationary.phase_rep1

DamtR.with.vs..DamtR.without.N_dyeswap_.rep1

Biological.replicate.5.of.7..ethambutol.treatment

Tet.CarD.vs.Control..Replicates.1..2..and.3.

Slow.vs..Fast.Replicate.5

Slow.vs..Fast.Replicate.1

Slow.vs..Fast.Replicate.2

Biological.replicate.7.of.7..panaxydol.treatment

BatchCulture_LBTbroth_ExponentialPhase_Replicate2

Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.

BatchCulture_LBTbroth_ExponentialPhase_Replicate1

mc2155.pMind..vs.mc2155.pMind.6189.replicate.2

Wild.type.rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1

WT.with.vs..without.N_rep2

WT.with.vs..without.N_rep1

DglnR_without.vs..with.N_dyeswap_rep2

X2XR.rep1

X2XR.rep2

DglnR_without.vs..with.N_dyeswap_rep1

WT.vs..DglnR.N_starvation_rep1

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep3

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep2

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep4

BatchCulture_LBTbroth_StationaryPhase_Replicate1

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1

X4dbfcy3plogcy5slide903norm

Bedaquiline.vs..DMSO.120min

Comments