Module 432 Residual: 0.50Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.50	2e-24	0.0000022	78	34	20160204

Motifs

Motif 1
	e-value: 2e-24
Motif 2
	e-value: 0.0000022

Module Plots

Members

MSMEG_1883 Choline/carnitine/betaine transporter (Glycine betaine transporter OpuD)	MSMEG_0499 Amino acid permease-associated region
MSMEG_5461 Uncharacterized protein	MSMEG_4303 Methyltransferase (Methyltransferase type 11) (EC 2.1.1.80)
MSMEG_5460 Uncharacterized protein	MSMEG_6538 3-oxoacyl-(Acyl-carrier-protein) reductase, putative (Short-chain dehydrogenase/reductase SDR)
MSMEG_1288 Uncharacterized protein	MSMEG_5601 Uncharacterized protein
MSMEG_3447 Putative two-component system response regulator, LuxR family (Two-component system response regulator)	MSMEG_0500 Regulator of polyketide synthase expression, putative
MSMEG_0823 Uncharacterized protein	MSMEG_1517 SPFH domain / Band 7 family protein (Spfh domain/band 7 family protein, putative)
MSMEG_4737 Uncharacterized protein	MSMEG_1412 Amino acid permease (Cationic amino acid transport integral membrane protein RocE)
MSMEG_1287 Cyclase/dehydrase superfamily protein	MSMEG_5801 Hydroxylase (Uncharacterized protein)
MSMEG_1286 Sulfatase (EC 3.1.6.6) (Sulfatase family protein)	MSMEG_5802 Oxidoreductase, short chain dehydrogenase/reductase family protein (Short-chain dehydrogenase/reductase SDR) (EC 1.1.1.100)
MSMEG_1740 Dehydrogenase/reductase SDR family protein member 4 (EC 1.1.1.184) (Short-chain dehydrogenase/reductase SDR)	MSMEG_6321 Glycerol dehydratase large subunit
MSMEG_6318 Putative diol dehydratase reactivation protein (Uncharacterized protein)	MSMEG_6320 Diol dehydrase gamma subunit (Propanediol dehydratase, small subunit) (EC 4.2.1.30)
MSMEG_1413 Ornithine--oxo-acid transaminase (EC 2.6.1.13)	MSMEG_1520 50S ribosomal protein L36
MSMEG_1519 Translation initiation factor IF-1	MSMEG_1135 Uncharacterized protein
MSMEG_0497 Glycerol dehydratase large subunit (Propanediol dehydratase medium subunit) (EC 4.2.1.30)	MSMEG_5026 Uncharacterized protein
MSMEG_0496 Coenzyme B12-dependent glycerol dehydrogenase small subunit (Propanediol dehydratase small subunit) (EC 4.2.1.30)	MSMEG_5285 Patatin (Phospholipase, patatin family protein)
MSMEG_4304 Regulatory protein	MSMEG_0483 Major facilitator superfamily MFS_1 (Shikimate transporter)
MSMEG_1738 Probable conserved transmembrane protein (Putative conserved transmembrane protein)	MSMEG_3662 LysM domain protein (Mannose-binding lectin)

Conditions

mc2155.vs.Dcrp1.replicate.1

WT.vs..DamtR.without.N_rep1

Biological.replicate.2.of.7..panaxydol.treatment

Wild.type.rep2.x

Biological.replicate.5.of.6..isoniazid.treatment

Biological.replicate.1.of.6..negative.control

MB100pruR.vs..MB100..rep.3

dosR.WT_Replicate2

KO_log.phase_rep2

Wild.type.rep2.y

Wild.type.rep1.y

Wild.type.rep1.x

Biological.replicate.7.of.7..falcarinol.treatment

MB100pruR.vs..MB100.rep.4

Biological.replicate.3.of.7..panaxydol.treatment

MB100pruR.vs..MB100.rep.2

WT.vs..DamtR.without.N_.dyeswap_rep2

Biological.replicate.1.of.6..kanamycin.treatment

Biological.replicate.1.of.6..isoniazid.treatment

Biological.replicate.7.of.7..ethambutol.treatment

Biological.replicate.1.of.7..ethambutol.treatment

Biological.replicate.6.of.6..kanamycin.treatment

rel.knockout.rep2

X4XR.rep1

Bedaquiline.vs..DMSO..45min

Biological.replicate.6.of.6..negative.control

Biological.replicate.6.of.7..panaxydol.treatment

M..smegmatis.Acid.NO.treated

Biological.replicate.3.of.7..ethambutol.treatment

Biological.replicate.4.of.6..kanamycin.treatment

WT.vs..DglnR.N_starvation_dye.swap_rep1

Biological.replicate.5.of.6..kanamycin.treatment

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1

WT.vs..DamtR.N.surplus_rep2

WT.vs..DamtR.N.surplus_rep1

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep2

mc2155.vs.Dcrp1.replicate.2

stphcy5plogcy3slide487norm

Slow.vs..Fast.Replicate.3

Biological.replicate.1.of.7..panaxydol.treatment

mc2155.vs.Dcrp1.replicate.4

X3dbfcy5plogcy3slide603norm

dcpA.knockout.rep1

X4dbfcy5plogcy3slide480norm

X3dbfcy5plogcy3slide601norm

Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.

Biological.replicate.2.of.7..ethambutol.treatment

X2.5..vs..50..air.saturation.Replicate.1

X2.5..vs..50..air.saturation.Replicate.2

WT_stationary.phase_rep2

Biological.replicate.1.of.7..falcarinol.treatment

Biological.replicate.5.of.7..ethambutol.treatment

Tet.CarD.vs.Control..Replicates.1..2..and.3.

Slow.vs..Fast.Replicate.5

Biological.replicate.4.of.7..falcarinol.treatment

Slow.vs..Fast.Replicate.1

Slow.vs..Fast.Replicate.2

Biological.replicate.7.of.7..panaxydol.treatment

BatchCulture_LBTbroth_ExponentialPhase_Replicate2

Biological.replicate.5.of.6..negative.control

mc2155.pMind..vs.mc2155.pMind.6189.replicate.4

BatchCulture_LBTbroth_ExponentialPhase_Replicate1

mc2155.pMind..vs.mc2155.pMind.6189.replicate.2

BatchCulture_LBTbroth_ExponentialPhase_Replicate4

WT.vs..DamtR.N.surplus_.dyeswap_rep1

WT.vs..DglnR.N_starvation_rep2

X2XR.rep1

X2XR.rep2

mc2155.pMind..vs.mc2155.pMind.6189.replicate.1

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep1

Sub.MIC.INH

Plogcy5plogcy3slide113norm

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep4

Biological.replicate.2.of.6..kanamycin.treatment

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1

Biological.replicate.6.of.7..falcarinol.treatment

Bedaquiline.vs..DMSO.120min

Comments