Module 443 Residual: 0.56
Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Residual Motif 1 e-value Motif 2 e-value Conditions Genes version
0.56 0.000000001 68 74 27 20160204
Motif 1
e-value: 0.000000001
e-value: 68
MSMEG_4463 CalR5 (CalR5 protein) MSMEG_5726 Uncharacterized protein
MSMEG_4464 Modulator of DNA gyrase (Peptidase U62 modulator of DNA gyrase) MSMEG_5727 Probable allantoicase (EC 3.5.3.4) (Allantoate amidinohydrolase)
MSMEG_6841 Uncharacterized protein MSMEG_5723 Endoribonuclease L-PSP (Endoribonuclease L-psp family protein)
MSMEG_6526 Pyridoxamine 5'-phosphate oxidase family protein (Pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein) MSMEG_1426 Glycosyl transferase (Probable membrane sugar transferase)
MSMEG_0905 4-carboxymuconolactone decarboxylase domain protein (EC 4.1.1.44) (Carboxymuconolactone decarboxylase) MSMEG_1425 Creatininase subfamily protein (EC 3.5.2.10)
MSMEG_6390 Transporter, major facilitator family protein MSMEG_5728 Polysaccharide deacetylase family protein (Urate catabolism protein (Polysaccharide deacetylase family protein)) (EC 3.5.1.41)
MSMEG_6117 D-glucarate dehydratase (EC 4.2.1.40) (Glucarate dehydratase) (EC 4.2.1.40) MSMEG_3992 Integral membrane transport protein (Metabolite transporter, MFS superfamily protein)
MSMEG_6115 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein (EC 1.1.1.29) (Phosphoglycerate dehydrogenase) MSMEG_1397 Transcription regulator, TetR family (Transcriptional regulator, TetR family protein)
MSMEG_6935 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) MSMEG_3996 Dihydropyrimidinase (EC 3.5.2.2)
MSMEG_2965 GTP pyrophosphokinase (EC 2.7.6.5) (GTP pyrophosphokinase RelA) (EC 2.7.6.5) MSMEG_1734 Uncharacterized protein
MSMEG_6166 Uncharacterized protein MSMEG_0029 Anthranilate synthase component 2 (EC 4.1.3.27) (Putative anthranilate synthase component II trpG)
MSMEG_5505 Uncharacterized protein MSMEG_2585 Uncharacterized protein
MSMEG_6602 Oxidoreductase (Putative luciferase-like oxidoreductase) MSMEG_5160 Putative integral membrane protein
MSMEG_5724 Bacterial regulatory protein, MarR family protein (MarR family regulatory protein)
KO_stationary.phase_rep1
KO_stationary.phase_rep2
WT.vs..DglnR.N_starvation_rep2
WT.vs..DamtR.without.N_rep1
X3dbfcy5plogcy3slide601norm
dosR.WT_Replicate4
Biological.replicate.4.of.6..isoniazid.treatment
dosR.WT_Replicate2
dosR.WT_Replicate1
stphcy5plogcy3slide487norm
WT.vs..DamtR.N.surplus_dyeswap_rep2
Wild.type.rep1.x
Wild.type.rep1.y
MB100pruR.vs..MB100.rep.4
MB100pruR.vs..MB100.rep.2
WT.vs..DamtR.without.N_.dyeswap_rep1
WT.vs..DamtR.without.N_.dyeswap_rep2
MB100pruR.vs..MB100.rep.1
mc2155.vs.Dcrp1.replicate.3
Bedaquiline.vs..DMSO.60min
rel.knockout.rep1
Bedaquiline.vs..DMSO..45min
Biological.replicate.6.of.7..panaxydol.treatment
JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep3
X0.6..vs..50..air.saturation.Replicate.1
WT_log.phase_rep2
X0.6..vs..50..air.saturation.Replicate.3
X0.6..vs..50..air.saturation.Replicate.2
X0.6..vs..50..air.saturation.Replicate.5
WT.vs..DglnR.N_starvation_dye.swap_rep2
M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3
Biological.replicate.1.of.6..kanamycin.treatment
Plogcy5plogcy3slide113norm
Biological.replicate.7.of.7..panaxydol.treatment
Biological.replicate.1.of.7..panaxydol.treatment
mc2155.vs.Dcrp1.replicate.4
JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep4
dcpA.knockout.rep1
Biological.replicate.2.of.6..isoniazid.treatment
WT.vs..DamtR.N.surplus_rep1
stphcy5plogcy3slide580norm
X2.5..vs..50..air.saturation.Replicate.4
X3dbfcy3plogcy5slide607norm
WT_log.phase_rep1
X2.5..vs..50..air.saturation.Replicate.2
X2.5..vs..50..air.saturation.Replicate.3
Log.phase.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.
Biological.replicate.6.of.6..isoniazid.treatment
X4XR.rep2
DamtR.with.vs..DamtR.without.N_dyeswap_.rep1
Biological.replicate.5.of.7..ethambutol.treatment
Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.
WT.with.vs..without.N_dye.swap_rep2
WT.vs..DglnR.N_starvation_dye.swap_rep1
Biological.replicate.6.of.7..ethambutol.treatment
Slow.vs..Fast.Replicate.3
Biological.replicate.5.of.6..negative.control
X3dbfcy5plogcy3slide603norm
mc2155.vs.Dcrp1.replicate.1
Wild.type.rep3
WT.vs..DamtR.N.surplus_.dyeswap_rep1
WT.with.vs..without.N_rep2
WT.with.vs..without.N_rep1
JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep1
WT.vs..DglnR.N_starvation_rep1
BatchCulture_LBTbroth_StationaryPhase_Replicate4
Sub.MIC.INH
BatchCulture_LBTbroth_StationaryPhase_Replicate2
BatchCulture_LBTbroth_StationaryPhase_Replicate3
Biological.replicate.2.of.7..ethambutol.treatment
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2
X4dbfcy3plogcy5slide903norm
Biological.replicate.6.of.7..falcarinol.treatment
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