Module 452 Residual: 0.55
Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Residual Motif 1 e-value Motif 2 e-value Conditions Genes version
0.55 3.6e-30 0.00016 80 30 20160204
Motif 1
e-value: 3.6e-30
e-value: 0.00016
MSMEG_3722 Bifunctional coenzyme PQQ synthesis protein C/D (EC 1.3.3.11) (Coenzyme PQQ synthesis protein D) MSMEG_1476 Putative protease IV Sppa (EC 3.1.3.2) (Signal peptide peptidase SppA, 67K type) (EC 3.4.-.-)
MSMEG_3723 Pyrroloquinoline-quinone synthase (EC 1.3.3.11) (Coenzyme PQQ synthesis protein C) (Pyrroloquinoline quinone biosynthesis protein C) MSMEG_2632 Methyltransferase type 11 (SAM-dependent methyltransferase)
MSMEG_3720 Recombination activating protein 1 MSMEG_2637 Oxidoreductase, Gfo/Idh/MocA family protein
MSMEG_3721 Coenzyme PQQ synthesis protein E (Pyrroloquinoline quinone biosynthesis protein E) MSMEG_2638 Uncharacterized protein
MSMEG_3724 Coenzyme PQQ synthesis protein B (Pyrroloquinoline quinone biosynthesis protein B) MSMEG_0979 Keratin associated protein
MSMEG_3331 Uncharacterized protein MSMEG_0976 Uncharacterized protein
MSMEG_3330 Conserved domain protein (Uncharacterized protein) MSMEG_0977 Uncharacterized protein
MSMEG_3332 TetR-family transcriptional regulator (Transcriptional regulator, TetR family protein) MSMEG_4289 Amidohydrolase
MSMEG_2049 Putative transcriptional regulator, TetR family protein (Transcriptional regulator, TetR family) MSMEG_2361 Phosphoribosylglycinamide formyltransferase (Phosphoribosylglycinamide formyltransferase protein)
MSMEG_6423 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) (Glycerophosphoryl diester phosphodiesterase family protein) MSMEG_2360 4-coumarate CoA ligase (EC 6.2.1.12) (4-coumarate:CoA ligase)
MSMEG_5308 Uncharacterized protein MSMEG_2362 DNA ligase A (EC 6.5.1.2) (Polydeoxyribonucleotide synthase [NAD(+)])
MSMEG_2047 Probable enoyl-CoA hydratase (EC 4.2.1.17) MSMEG_4491 DNA repair protein RecO (Recombination protein O)
MSMEG_4488 Hydrolase, nudix family protein (MutT/NUDIX family protein) MSMEG_4490 Decaprenyl diphosphate synthase (DecaPP) (EC 2.5.1.86) (Decaprenyl pyrophosphate synthase) (Long-chain isoprenyl diphosphate synthase) (Trans,polycis-decaprenyl diphosphate synthase)
MSMEG_4489 Uncharacterized protein MSMEG_2640 3-dehydroshikimate dehydratase (Xylose isomerase domain protein TIM barrel)
MSMEG_1475 Uncharacterized protein MSMEG_5381 Uncharacterized protein
KO_stationary.phase_rep2
KO_log.phase_rep1
WT.vs..DamtR.without.N_rep2
M..smegmatis.Acid.NO.treated
Biological.replicate.4.of.6..negative.control
Plogcy5plogcy3slide110norm
Biological.replicate.4.of.6..isoniazid.treatment
dosR.WT_Replicate1
stphcy5plogcy3slide487norm
Wild.type.rep2.y
Wild.type.rep1.y
Biological.replicate.7.of.7..falcarinol.treatment
MB100pruR.vs..MB100.rep.4
DamtR.with.vs..DamtR.without.N_.rep2
Biological.replicate.6.of.6..negative.control
DglnR_without.vs..with.N_rep2
Biological.replicate.2.of.7..panaxydol.treatment
Biological.replicate.1.of.6..kanamycin.treatment
Biological.replicate.1.of.6..isoniazid.treatment
Biological.replicate.7.of.7..ethambutol.treatment
Biological.replicate.1.of.7..ethambutol.treatment
Biological.replicate.6.of.6..kanamycin.treatment
rel.knockout.rep2
Biological.replicate.6.of.7..falcarinol.treatment
DamtR.with.vs..DamtR.without.N_.rep1
Biological.replicate.3.of.7..ethambutol.treatment
Biological.replicate.4.of.6..kanamycin.treatment
WT.vs..DamtR.without.N_.dyeswap_rep1
X0.6..vs..50..air.saturation.Replicate.1
X0.6..vs..50..air.saturation.Replicate.3
X0.6..vs..50..air.saturation.Replicate.2
X0.6..vs..50..air.saturation.Replicate.5
Biological.replicate.6.of.7..ethambutol.treatment
M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3
M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep2
Plogcy5plogcy3slide113norm
mc2155.vs.Dcrp1.replicate.1
Biological.replicate.2.of.7..ethambutol.treatment
JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep4
Biological.replicate.5.of.7..panaxydol.treatment
Biological.replicate.2.of.6..isoniazid.treatment
Sub.MIC.INH
Biological.replicate.2.of.7..falcarinol.treatment
stphcy5plogcy3slide580norm
Biological.replicate.3.of.6..kanamycin.treatment
WT.with.vs..without.N_dye.swap_rep1
X3dbfcy3plogcy5slide607norm
DglnR_without.vs..with.N_rep1
Biological.replicate.3.of.7..panaxydol.treatment
DamtR.with.vs..DamtR.without.N_dyeswap_.rep1
WT.vs..DamtR.N.surplus_rep2
Biological.replicate.2.of.6..kanamycin.treatment
Log.phase.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.
Biological.replicate.6.of.6..isoniazid.treatment
mc2155.vs.Dcrp1.replicate.3
Biological.replicate.5.of.7..ethambutol.treatment
Slow.vs..Fast.Replicate.4
Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.
Slow.vs..Fast.Replicate.2
Biological.replicate.7.of.7..panaxydol.treatment
BatchCulture_LBTbroth_ExponentialPhase_Replicate2
X3dbfcy5plogcy3slide603norm
BatchCulture_LBTbroth_ExponentialPhase_Replicate1
mc2155.pMind..vs.mc2155.pMind.6189.replicate.2
X4dbfcy5plogcy3slide901norm
BatchCulture_LBTbroth_ExponentialPhase_Replicate4
WT.vs..DamtR.N.surplus_dyeswap_rep2
WT.with.vs..without.N_rep2
Log.phase.cultures.without.induction.of.I.SceI.expression..T.0...Atc.
WT.with.vs..without.N_rep1
DglnR_without.vs..with.N_dyeswap_rep1
Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.
JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep2
BatchCulture_LBTbroth_StationaryPhase_Replicate2
BatchCulture_LBTbroth_StationaryPhase_Replicate3
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1
Biological.replicate.3.of.6..negative.control
Biological.replicate.6.of.7..panaxydol.treatment
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