Module 502 Residual: 0.50Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.50	0.00000000023	120	85	17	20160204

Motifs

Motif 1
	e-value: 0.00000000023
Motif 2
	e-value: 120

Module Plots

Members

MSMEG_2703 Hydrogenase assembly chaperone HypC/HupF (Hydrogenase maturation factor, HypC)	MSMEG_1715 L-arabinose isomerase (EC 5.3.1.4)
MSMEG_5999 Short chain dehydrogenase (Short-chain dehydrogenase/reductase SDR) (EC 1.1.1.100)	MSMEG_1714 L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) (L-ribulose-5-phosphate 4-epimerase UlaF)
MSMEG_2702 Hydrogenase expression/formation protein HypD (Hydrogenase expression/formation protein hypD)	MSMEG_6002 Coenzyme A transferase, subunit A (Putative coa-transferase (Alpha subunit)) (EC 2.8.3.12)
MSMEG_6000 Short chain dehydrogenase (Short-chain dehydrogenase/reductase SDR) (EC 1.1.1.100)	MSMEG_6003 Coenzyme A transferase, subunit B
MSMEG_6008 Acetyl-CoA acetyltransferase (Putative acetyl-COA acetyltransferase Fada6 (Acetoacetyl-COA thiolase)) (EC 2.3.1.-)	MSMEG_6004 2-nitropropane dioxygenase NPD (EC 1.13.12.16) (Oxidoreductase, 2-nitropropane dioxygenase family protein)
MSMEG_6009 HTH-type transcriptional repressor KstR2	MSMEG_6012 Putative acyl-CoA dehydrogenase
MSMEG_2854 Putative integral membrane protein yrbE4B (Uncharacterized protein)	MSMEG_6011 Short chain dehydrogenase (Short-chain dehydrogenase/reductase SDR) (EC 1.1.1.100)
MSMEG_1713 Ribulokinase (EC 2.7.1.16)	MSMEG_2858 Virulence factor mce family protein
MSMEG_6001 Enoyl-CoA hydratase (Enoyl-CoA hydratase/isomerase) (EC 4.2.1.17)

Conditions

KO_stationary.phase_rep1

WT.vs..DglnR.N_starvation_rep2

WT.vs..DamtR.without.N_rep1

Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

Biological.replicate.4.of.6..negative.control

Mycobacterium.smegmatis.Spheroplast.induced

Biological.replicate.3.of.7..ethambutol.treatment

dosR.WT_Replicate3

Tet.CarD.vs.Control..Replicates.1..2..and.3.

KO_log.phase_rep2

KO_log.phase_rep1

Plogcy5plogcy3slide110norm

X3dbfcy5plogcy3slide601norm

Biological.replicate.7.of.7..falcarinol.treatment

MB100pruR.vs..MB100.rep.4

Biological.replicate.3.of.7..panaxydol.treatment

Biological.replicate.6.of.6..negative.control

Biological.replicate.2.of.7..panaxydol.treatment

Biological.replicate.1.of.6..isoniazid.treatment

Biological.replicate.7.of.7..ethambutol.treatment

Biological.replicate.1.of.7..ethambutol.treatment

Biological.replicate.3.of.7..falcarinol.treatment

Wild.type.rep3

Biological.replicate.1.of.7..falcarinol.treatment

Biological.replicate.4.of.7..falcarinol.treatment

Biological.replicate.6.of.7..falcarinol.treatment

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep3

Biological.replicate.3.of.6..isoniazid.treatment

WT.vs..DglnR.N_starvation_dye.swap_rep1

X0.6..vs..50..air.saturation.Replicate.1

WT_log.phase_rep2

Biological.replicate.5.of.7..falcarinol.treatment

X0.6..vs..50..air.saturation.Replicate.2

X0.6..vs..50..air.saturation.Replicate.5

WT.vs..DglnR.N_starvation_dye.swap_rep2

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3

Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.

mc2155.vs.Dcrp1.replicate.2

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1

Biological.replicate.1.of.7..panaxydol.treatment

mc2155.vs.Dcrp1.replicate.4

Biological.replicate.3.of.6..negative.control

Biological.replicate.2.of.7..falcarinol.treatment

Biological.replicate.5.of.6..negative.control

X2.5..vs..50..air.saturation.Replicate.4

WT.with.vs..without.N_dye.swap_rep1

WT_log.phase_rep1

Biological.replicate.4.of.7..panaxydol.treatment

stphcy5plogcy3slide487norm

X2.5..vs..50..air.saturation.Replicate.2

WT.with.vs..without.N_dye.swap_rep2

Biological.replicate.2.of.6..negative.control

Log.phase.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

Biological.replicate.6.of.6..isoniazid.treatment

DamtR.with.vs..DamtR.without.N_dyeswap_.rep1

mc2155.vs.Dcrp1.replicate.3

Slow.vs..Fast.Replicate.4

Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.

Bedaquiline.vs..DMSO.60min

Biological.replicate.2.of.6..kanamycin.treatment

Slow.vs..Fast.Replicate.1

Biological.replicate.6.of.7..ethambutol.treatment

Slow.vs..Fast.Replicate.3

BatchCulture_LBTbroth_ExponentialPhase_Replicate3

X4dbfcy5plogcy3slide480norm

BatchCulture_LBTbroth_ExponentialPhase_Replicate1

Biological.replicate.3.of.6..kanamycin.treatment

X4dbfcy5plogcy3slide901norm

mc2155.pMind..vs.mc2155.pMind.6189.replicate.1

WT.with.vs..without.N_rep2

Wild.type.rep1.x

WT.with.vs..without.N_rep1

DglnR_without.vs..with.N_dyeswap_rep2

X2XR.rep1

X2XR.rep2

DglnR_without.vs..with.N_dyeswap_rep1

WT.vs..DglnR.N_starvation_rep1

BatchCulture_LBTbroth_StationaryPhase_Replicate4

BatchCulture_LBTbroth_StationaryPhase_Replicate2

BatchCulture_LBTbroth_StationaryPhase_Replicate1

dosR.WT_Replicate2

Plogcy5plogcy3slide113norm

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1

X4dbfcy3plogcy5slide903norm

Bedaquiline.vs..DMSO.120min

Comments