Module 521 Residual: 0.48Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.48	0.0000000000006	0.000087	74	33	20160204

Motifs

Motif 1
	e-value: 0.0000000000006
Motif 2
	e-value: 0.000087

Module Plots

Members

MSMEG_2414 Phosphopantetheine adenylyltransferase (EC 2.7.7.3) (Dephospho-CoA pyrophosphorylase) (Pantetheine-phosphate adenylyltransferase) (PPAT)	MSMEG_5640 Amylo-alpha-1,6-glucosidase
MSMEG_4034 NAD dependent epimerase/dehydratase family protein (NmrA-like family protein)	MSMEG_5499 Uncharacterized protein
MSMEG_4135 Possible lysine decarboxylase superfamily protein (Uncharacterized protein)	MSMEG_5523 Peptidase (Peptidase S9, prolyl oligopeptidase active site region) (EC 3.4.19.1)
MSMEG_1824 Transcriptional regulator, LytR family protein	MSMEG_3362 Enoyl-CoA hydratase (Enoyl-CoA hydratase/isomerase) (EC 4.2.1.17)
MSMEG_3566 FadD16 (FadD16 protein)	MSMEG_3363 Regulatory protein, TetR (Transcriptional regulator, TetR family)
MSMEG_0439 UPF0324 membrane protein (Uncharacterized protein)	MSMEG_4003 Uncharacterized protein
MSMEG_6357 Uncharacterized protein	MSMEG_3364 Lysine exporter protein (LYSE/YGGA) (RhtB family protein transporter)
MSMEG_6198 DNA-binding protein, putative (Purine catabolism PurC domain protein)	MSMEG_5947 Serine O-acetyltransferase (EC 2.3.1.30)
MSMEG_2792 ATP-dependent protease ATP-binding subunit ClpC2 (Clp amino terminal domain protein)	MSMEG_1567 Uncharacterized protein
MSMEG_2416 Uncharacterized protein	MSMEG_6060 Permease
MSMEG_6059 IrpA (Uncharacterized protein)	MSMEG_6061 Uncharacterized protein
MSMEG_6058 Cadmium transporting P-type ATPase (Metal cation transporting P-type ATPase CtpC)	MSMEG_1568 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
MSMEG_2840 Putative conserved membrane protein (Uncharacterized protein)	MSMEG_2427 Bifunctional uridylyltransferase/uridylyl-removing enzyme (UTase/UR) (Bifunctional [protein-PII] modification enzyme) (Bifunctional nitrogen sensor protein)
MSMEG_3945 Universal stress protein family protein	MSMEG_4427 Drug resistance transporter, EmrB/QacA family (Transmembrane efflux pump)
MSMEG_5037 Oxidoreductase, FAD-binding (Putative glycolate oxidase FAD-linked subunit) (EC 1.1.2.4)	MSMEG_3915 NAD-dependent alcohol dehydrogenase (EC 1.1.1.1)
MSMEG_3715 Linear gramicidin synthetase subunit C (EC 5.1.1.-) (Non-ribosomal peptide synthase) (EC 1.2.1.31)	MSMEG_5376 Uncharacterized protein
MSMEG_5642 Acetyl-coenzyme a carboxylase carboxyl transferase (Putative carboxyltransferase subunit of acetyl-CoA carboxylase) (EC 6.4.1.2)

Conditions

Biological.replicate.4.of.7..falcarinol.treatment

WT.vs..DamtR.without.N_rep1

Wild.type.rep2.y

Biological.replicate.4.of.6..negative.control

Sub.MIC.INH

Mycobacterium.smegmatis.Spheroplast.induced

dosR.WT_Replicate4

Biological.replicate.4.of.7..ethambutol.treatment

Biological.replicate.1.of.6..negative.control

MB100pruR.vs..MB100..rep.3

KO_log.phase_rep2

KO_log.phase_rep1

Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.

Biological.replicate.7.of.7..falcarinol.treatment

DglnR_without.vs..with.N_rep2

MB100pruR.vs..MB100.rep.2

WT.vs..DamtR.without.N_.dyeswap_rep2

MB100pruR.vs..MB100.rep.1

Biological.replicate.1.of.6..isoniazid.treatment

Biological.replicate.1.of.7..ethambutol.treatment

Biological.replicate.6.of.6..kanamycin.treatment

Bedaquiline.vs..DMSO..45min

Biological.replicate.1.of.7..falcarinol.treatment

Biological.replicate.6.of.7..panaxydol.treatment

Biological.replicate.3.of.7..ethambutol.treatment

WT.vs..DglnR.N_starvation_dye.swap_rep1

X0.6..vs..50..air.saturation.Replicate.1

WT_log.phase_rep2

X0.6..vs..50..air.saturation.Replicate.3

X0.6..vs..50..air.saturation.Replicate.2

X0.6..vs..50..air.saturation.Replicate.4

Biological.replicate.1.of.6..kanamycin.treatment

mc2155.vs.Dcrp1.replicate.2

mc2155.vs.Dcrp1.replicate.3

mc2155.vs.Dcrp1.replicate.1

Biological.replicate.2.of.7..ethambutol.treatment

mc2155.vs.Dcrp1.replicate.4

Biological.replicate.3.of.6..negative.control

Biological.replicate.5.of.7..panaxydol.treatment

dcpA.knockout.rep1

Biological.replicate.5.of.6..negative.control

X2.5..vs..50..air.saturation.Replicate.4

Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.

stphcy3plogcy5slide581norm

WT.with.vs..without.N_dye.swap_rep1

X2.5..vs..50..air.saturation.Replicate.2

WT.with.vs..without.N_dye.swap_rep2

WT_stationary.phase_rep2

WT_stationary.phase_rep1

Biological.replicate.6.of.6..isoniazid.treatment

X4XR.rep2

Biological.replicate.5.of.7..ethambutol.treatment

Slow.vs..Fast.Replicate.4

Slow.vs..Fast.Replicate.5

Biological.replicate.2.of.6..kanamycin.treatment

Slow.vs..Fast.Replicate.1

WT.vs..DglnR.N_starvation_dye.swap_rep2

Plogcy5plogcy3slide110norm

X4dbfcy5plogcy3slide480norm

BatchCulture_LBTbroth_ExponentialPhase_Replicate1

mc2155.pMind..vs.mc2155.pMind.6189.replicate.2

mc2155.pMind..vs.mc2155.pMind.6189.replicate.3

WT.vs..DamtR.N.surplus_.dyeswap_rep1

WT.with.vs..without.N_rep1

DglnR_without.vs..with.N_dyeswap_rep2

Log.phase.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

Biological.replicate.5.of.6..isoniazid.treatment

BatchCulture_LBTbroth_StationaryPhase_Replicate4

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep2

BatchCulture_LBTbroth_StationaryPhase_Replicate2

BatchCulture_LBTbroth_StationaryPhase_Replicate3

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3

Biological.replicate.5.of.6..kanamycin.treatment

X4dbfcy3plogcy5slide903norm

Comments