Module 567 Residual: 0.55
Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Residual Motif 1 e-value Motif 2 e-value Conditions Genes version
0.55 87 220 76 18 20160204
Motif 1
e-value: 87
e-value: 220
MSMEG_2379 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (3-IPM-DH) (Beta-IPM dehydrogenase) MSMEG_5330 Glutamine-fructose-6-phosphate transaminase (Isomerizing) (EC 2.6.1.16) (SIS domain protein)
MSMEG_3285 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Isocitrate dehydrogenase, NAD-dependent) (EC 1.1.1.-) MSMEG_3456 Hydroxylaminobenzene mutase
MSMEG_2377 P49 protein (Putative alanine rich dehydrogenase) MSMEG_0536 Intracellular protease, PfpI family (Intracellular protease, PfpI family protein)
MSMEG_2378 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) MSMEG_0383 Rv1174c (Uncharacterized protein)
MSMEG_4576 SPFH domain, Band 7 family protein (SpfH domain protein) MSMEG_2520 Elongation factor Ts (EF-Ts)
MSMEG_3169 Isoleucine--tRNA ligase (EC 6.1.1.5) (Isoleucyl-tRNA synthetase) MSMEG_2440 50S ribosomal protein L19
MSMEG_2518 Peptidase M23B MSMEG_2621 Proline--tRNA ligase (EC 6.1.1.15) (Prolyl-tRNA synthetase) (ProRS)
MSMEG_2519 30S ribosomal protein S2 MSMEG_2046 GlcNAc-PI de-N-acetylase family protein
MSMEG_1919 Transcriptional regulator WhiB MSMEG_3563 Drug resistance transporter EmrB/QacA subfamily (Drug transporter)
Bedaquiline.vs..DMSO.30min
WT.vs..DamtR.without.N_rep1
Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.
dcpA.knockout.rep2
Biological.replicate.4.of.6..negative.control
Wild.type.rep2.x
Biological.replicate.4.of.7..ethambutol.treatment
Biological.replicate.4.of.6..isoniazid.treatment
Bedaquiline.vs..DMSO.15min
dosR.WT_Replicate2
dosR.WT_Replicate1
Biological.replicate.5.of.6..negative.control
Wild.type.rep2.y
Plogcy5plogcy3slide110norm
Wild.type.rep1.x
Wild.type.rep1.y
Biological.replicate.3.of.7..panaxydol.treatment
Biological.replicate.6.of.6..negative.control
MB100pruR.vs..MB100.rep.1
Bedaquiline.vs..DMSO.60min
rel.knockout.rep2
Wild.type.rep3
Bedaquiline.vs..DMSO..45min
Biological.replicate.1.of.7..falcarinol.treatment
Biological.replicate.6.of.7..falcarinol.treatment
WT.vs..DamtR.without.N_rep2
DamtR.with.vs..DamtR.without.N_.rep1
Biological.replicate.3.of.7..ethambutol.treatment
Biological.replicate.3.of.6..isoniazid.treatment
DamtR.with.vs..DamtR.without.N_.rep2
X3dbfcy5plogcy3slide601norm
X0.6..vs..50..air.saturation.Replicate.5
X0.6..vs..50..air.saturation.Replicate.4
M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3
Biological.replicate.1.of.6..kanamycin.treatment
mc2155.vs.Dcrp1.replicate.1
WT.vs..DamtR.N.surplus_rep2
Biological.replicate.5.of.7..panaxydol.treatment
WT.vs..DamtR.N.surplus_rep1
stphcy5plogcy3slide580norm
X2.5..vs..50..air.saturation.Replicate.4
X2.5..vs..50..air.saturation.Replicate.5
stphcy3plogcy5slide581norm
WT.with.vs..without.N_dye.swap_rep1
X4dbfcy5plogcy3slide480norm
X2.5..vs..50..air.saturation.Replicate.3
Biological.replicate.6.of.7..ethambutol.treatment
WT_stationary.phase_rep1
Biological.replicate.6.of.6..isoniazid.treatment
Biological.replicate.5.of.7..ethambutol.treatment
Tet.CarD.vs.Control..Replicates.1..2..and.3.
Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.
WT.with.vs..without.N_dye.swap_rep2
WT.vs..DamtR.N.surplus_dyeswap_rep2
Slow.vs..Fast.Replicate.2
Biological.replicate.7.of.7..panaxydol.treatment
BatchCulture_LBTbroth_ExponentialPhase_Replicate2
BatchCulture_LBTbroth_ExponentialPhase_Replicate3
X3dbfcy5plogcy3slide603norm
BatchCulture_LBTbroth_ExponentialPhase_Replicate4
WT.vs..DamtR.N.surplus_.dyeswap_rep1
Log.phase.cultures.without.induction.of.I.SceI.expression..T.0...Atc.
WT.with.vs..without.N_rep1
Biological.replicate.1.of.6..negative.control
WT.vs..DglnR.N_starvation_dye.swap_rep2
Biological.replicate.2.of.6..negative.control
Biological.replicate.1.of.7..ethambutol.treatment
JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep2
BatchCulture_LBTbroth_StationaryPhase_Replicate2
BatchCulture_LBTbroth_StationaryPhase_Replicate3
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2
Biological.replicate.3.of.6..negative.control
X4dbfcy3plogcy5slide903norm
Biological.replicate.6.of.7..panaxydol.treatment
Bedaquiline.vs..DMSO.120min
Log in to post comments