Module 588 Residual: 0.50Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.50	0.000000026	0.00000000001	80	29	20160204

Motifs

Motif 1
	e-value: 0.000000026
Motif 2
	e-value: 0.00000000001

Module Plots

Members

MSMEG_6919 Proline rich secreted protein Mtc28 (Proline-rich 28 kDa antigen)	MSMEG_6917 Leucine--tRNA ligase (EC 6.1.1.4) (Leucyl-tRNA synthetase) (LeuRS)
MSMEG_4507 Uncharacterized protein	MSMEG_5702 Molybdenum cofactor synthesis domain protein
MSMEG_4506 Uncharacterized protein	MSMEG_5703 Cyclic pyranopterin monophosphate synthase accessory protein (Molybdenum cofactor biosynthesis protein C)
MSMEG_4505 Heat-inducible transcription repressor HrcA	MSMEG_3791 50S ribosomal protein L20
MSMEG_3015 Uncharacterized protein	MSMEG_5701 Molybdopterin converting factor, subunit 2 (Putative molybdenum cofactor biosynthesis protein)
MSMEG_3016 Transglutaminase family protein (Uncharacterized protein)	MSMEG_5704 Uncharacterized protein
MSMEG_3017 Uncharacterized protein	MSMEG_5705 Uncharacterized protein
MSMEG_5636 Metal cation transporter ATPase P-type ctpE (P-type ATPase-metal cation transport)	MSMEG_6786 Uncharacterized protein
MSMEG_5637 Penicillin-binding protein 4	MSMEG_6784 Beta-lactamase
MSMEG_3018 Transglutaminase domain protein (Transglutaminase-like protein)	MSMEG_4190 Inositol monophosphatase family protein (Putative inositol monophosphatase CysQ)
MSMEG_3019 Uncharacterized protein	MSMEG_2469 AMP-dependent synthetase and ligase
MSMEG_2765 Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) (EC 3.6.1.23) (dUTP pyrophosphatase)	MSMEG_5022 Flavin-containing monooxygenase FMO (Flavoprotein involved in K+ transport-like protein) (EC 1.14.13.8)
MSMEG_4187 Uncharacterized protein	MSMEG_5021 Alcohol dehydrogenase GroES domain protein (Alcohol dehydrogenase, zinc-containing)
MSMEG_2766 Uncharacterized protein	MSMEG_5020 Acetoin reductase (Acetoin(Diacetyl) reductase) (EC 1.1.1.303)
MSMEG_4188 Short chain dehydrogenase (Short-chain dehydrogenase/reductase SDR) (EC 1.1.1.243)

Conditions

KO_stationary.phase_rep2

KO_log.phase_rep1

Bedaquiline.vs..DMSO.15min

M..smegmatis.Acid.NO.treated

Biological.replicate.4.of.6..negative.control

Bedaquiline.vs..DMSO.30min

Biological.replicate.1.of.6..negative.control

MB100pruR.vs..MB100..rep.3

dosR.WT_Replicate1

Biological.replicate.5.of.6..negative.control

KO_log.phase_rep2

Wild.type.rep2.y

Plogcy5plogcy3slide110norm

Wild.type.rep1.y

Biological.replicate.3.of.7..panaxydol.treatment

Biological.replicate.6.of.6..negative.control

Biological.replicate.2.of.7..panaxydol.treatment

MB100pruR.vs..MB100.rep.1

rel.knockout.rep2

Biological.replicate.1.of.7..falcarinol.treatment

Biological.replicate.5.of.6..isoniazid.treatment

Biological.replicate.6.of.7..falcarinol.treatment

DamtR.with.vs..DamtR.without.N_.rep1

Biological.replicate.3.of.7..ethambutol.treatment

Biological.replicate.3.of.6..isoniazid.treatment

DamtR.with.vs..DamtR.without.N_.rep2

X0.6..vs..50..air.saturation.Replicate.1

WT_log.phase_rep2

X0.6..vs..50..air.saturation.Replicate.3

X0.6..vs..50..air.saturation.Replicate.2

WT.vs..DglnR.N_starvation_dye.swap_rep2

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3

Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.

stphcy5plogcy3slide487norm

mc2155.vs.Dcrp1.replicate.1

Biological.replicate.1.of.7..panaxydol.treatment

WT.vs..DamtR.N.surplus_rep2

Biological.replicate.5.of.6..kanamycin.treatment

dcpA.knockout.rep2

dcpA.knockout.rep1

WT.vs..DamtR.N.surplus_rep1

stphcy5plogcy3slide580norm

X2.5..vs..50..air.saturation.Replicate.4

X2.5..vs..50..air.saturation.Replicate.5

WT_log.phase_rep1

WT.with.vs..without.N_dye.swap_rep1

X2.5..vs..50..air.saturation.Replicate.1

WT.with.vs..without.N_dye.swap_rep2

Biological.replicate.2.of.6..kanamycin.treatment

WT_stationary.phase_rep1

Biological.replicate.6.of.6..isoniazid.treatment

X4XR.rep2

Biological.replicate.4.of.6..isoniazid.treatment

mc2155.vs.Dcrp1.replicate.3

Slow.vs..Fast.Replicate.4

Biological.replicate.4.of.7..falcarinol.treatment

Slow.vs..Fast.Replicate.2

Biological.replicate.3.of.7..falcarinol.treatment

BatchCulture_LBTbroth_ExponentialPhase_Replicate3

X3dbfcy5plogcy3slide603norm

BatchCulture_LBTbroth_ExponentialPhase_Replicate1

Biological.replicate.3.of.6..kanamycin.treatment

WT.vs..DamtR.N.surplus_dyeswap_rep2

WT.with.vs..without.N_rep2

WT.vs..DglnR.N_starvation_rep2

DglnR_without.vs..with.N_dyeswap_rep2

X2XR.rep1

X2XR.rep2

mc2155.pMind..vs.mc2155.pMind.6189.replicate.1

WT.vs..DglnR.N_starvation_rep1

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep2

BatchCulture_LBTbroth_StationaryPhase_Replicate2

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep4

BatchCulture_LBTbroth_StationaryPhase_Replicate1

Biological.replicate.2.of.6..negative.control

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1

Biological.replicate.3.of.6..negative.control

Biological.replicate.1.of.6..kanamycin.treatment

Biological.replicate.6.of.7..panaxydol.treatment

Comments