Module 633 Residual: 0.52Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.52	0.000000000000055	0.0000000001	78	29	20160204

Motifs

Motif 1
	e-value: 0.000000000000055
Motif 2
	e-value: 0.0000000001

Module Plots

Members

MSMEG_6678 Uncharacterized protein	MSMEG_5219 Bifunctional deaminase-reductase domain protein (Riboflavin biosynthesis protein RibD C-domain protein)
MSMEG_3311 Acyl carrier protein	MSMEG_6088 Phosphoglycerate mutase (EC 5.4.2.-)
MSMEG_5442 Glutamate dehydrogenase	MSMEG_6089 Conserved membrane protein (Uncharacterized protein)
MSMEG_6445 PHP domain protein (EC 3.1.3.-)	MSMEG_6517 Uncharacterized protein
MSMEG_6446 Uncharacterized protein	MSMEG_6514 Maltokinase (MaK) (EC 2.7.1.175) (Maltose-1-phosphate synthase)
MSMEG_6447 Uncharacterized protein	MSMEG_6515 Trehalose synthase/amylase TreS (EC 3.2.1.1) (EC 5.4.99.16) (Maltose alpha-D-glucosyltransferase) (MTase)
MSMEG_5441 Methionine--tRNA ligase (EC 6.1.1.10)	MSMEG_6518 Uncharacterized protein MSMEG_6518/MSMEI_6344
MSMEG_4526 Uncharacterized protein	MSMEG_1463 Gamma-glutamyltransferase 1 Threonine peptidase MEROPS family T03 (EC 2.3.2.2) (Gamma-glutamyltranspeptidase)
MSMEG_1459 Rieske (2Fe-2S) region (EC 1.-.-.-) (Rieske [2Fe-2S] domain protein)	MSMEG_1462 Ferredoxin (Rieske (2Fe-2S) region) (EC 1.-.-.-)
MSMEG_2294	MSMEG_1461 5-oxovalerate dehydrogenase
MSMEG_2295	MSMEG_0146 Mosc domain protein
MSMEG_0796 ABC transporter integral membrane subunit (Putative ABC transporter membrane protein)	MSMEG_3819 Uncharacterized protein
MSMEG_2296	MSMEG_6225 Major facilitator superfamily MFS_1 (Proton antiporter efflux pump)
MSMEG_4361 Uncharacterized protein	MSMEG_3815 Possible drug efflux membrane protein (Uncharacterized protein)
MSMEG_3714 Putative conserved exported protein (Uncharacterized protein)

Conditions

KO_stationary.phase_rep2

WT.vs..DglnR.N_starvation_rep2

WT.vs..DamtR.without.N_rep1

Biological.replicate.2.of.7..panaxydol.treatment

Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.

WT.vs..DamtR.without.N_rep2

Biological.replicate.2.of.6..isoniazid.treatment

Biological.replicate.4.of.7..ethambutol.treatment

Biological.replicate.2.of.7..falcarinol.treatment

dosR.WT_Replicate3

dosR.WT_Replicate1

KO_log.phase_rep2

Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

Plogcy5plogcy3slide110norm

Wild.type.rep1.x

Biological.replicate.7.of.7..falcarinol.treatment

MB100pruR.vs..MB100.rep.4

Biological.replicate.3.of.7..panaxydol.treatment

MB100pruR.vs..MB100.rep.2

MB100pruR.vs..MB100.rep.1

Biological.replicate.7.of.7..ethambutol.treatment

Biological.replicate.5.of.7..panaxydol.treatment

Biological.replicate.1.of.7..ethambutol.treatment

Biological.replicate.3.of.7..falcarinol.treatment

Wild.type.rep3

Biological.replicate.6.of.7..falcarinol.treatment

Bedaquiline.vs..DMSO.15min

Biological.replicate.3.of.7..ethambutol.treatment

DamtR.with.vs..DamtR.without.N_.rep2

WT_log.phase_rep2

Sub.MIC.INH

WT.vs..DamtR.N.surplus_rep2

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep2

stphcy5plogcy3slide487norm

Wild.type.rep2.y

mc2155.vs.Dcrp1.replicate.1

X3dbfcy3plogcy5slide607norm

mc2155.vs.Dcrp1.replicate.4

dcpA.knockout.rep2

dcpA.knockout.rep1

WT.vs..DamtR.N.surplus_rep1

stphcy5plogcy3slide580norm

X2.5..vs..50..air.saturation.Replicate.4

X2.5..vs..50..air.saturation.Replicate.5

stphcy3plogcy5slide581norm

WT_log.phase_rep1

mc2155.pMind..vs.mc2155.pMind.6189.replicate.4

X2.5..vs..50..air.saturation.Replicate.2

WT_stationary.phase_rep2

WT_stationary.phase_rep1

Biological.replicate.6.of.6..isoniazid.treatment

X4XR.rep2

DamtR.with.vs..DamtR.without.N_dyeswap_.rep1

Biological.replicate.5.of.7..ethambutol.treatment

Tet.CarD.vs.Control..Replicates.1..2..and.3.

Bedaquiline.vs..DMSO.60min

Biological.replicate.2.of.6..kanamycin.treatment

Biological.replicate.6.of.7..ethambutol.treatment

Biological.replicate.7.of.7..panaxydol.treatment

BatchCulture_LBTbroth_ExponentialPhase_Replicate2

BatchCulture_LBTbroth_ExponentialPhase_Replicate3

X4dbfcy5plogcy3slide480norm

mc2155.pMind..vs.mc2155.pMind.6189.replicate.2

WT.vs..DamtR.N.surplus_dyeswap_rep2

WT.with.vs..without.N_rep2

WT.with.vs..without.N_rep1

X2XR.rep1

X2XR.rep2

Biological.replicate.5.of.7..falcarinol.treatment

Wild.type.rep1.y

WT.vs..DglnR.N_starvation_rep1

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep2

mc2155.vs.Dcrp1.replicate.3

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1

Biological.replicate.2.of.7..ethambutol.treatment

Comments