Module 659 Residual: 0.56Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.56	0.000000000075	0.00000018	76	32	20160204

Motifs

Motif 1
	e-value: 0.000000000075
Motif 2
	e-value: 0.00000018

Module Plots

Members

MSMEG_5100 Pyruvate ferredoxin/flavodoxin oxidoreductase (EC 1.2.7.8) (Pyruvate ferredoxin/flavodoxin oxidoreductase family protein)	MSMEG_2181 Cell filamentation protein
MSMEG_1597 Probable transcriptional regulator WhiB3	MSMEG_1225 Uncharacterized protein
MSMEG_5518 Antigen 34 kDa	MSMEG_3275 RNA polymerase sigma factor, sigma-70 family protein
MSMEG_4292 Conserved integral membrane protein (Integral membrane protein)	MSMEG_0404 Sigma associated protein
MSMEG_5220 Alpha/beta hydrolase fold-3 domain protein (Esterase/lipase/thioesterase)	MSMEG_0405 Extra cytoplasmic sigma factor
MSMEG_0471 Transcriptional regulator LysR family protein (Uncharacterized protein)	MSMEG_2749 Uncharacterized protein
MSMEG_0416 Uncharacterized protein	MSMEG_2748 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1)
MSMEG_6233 Uncharacterized protein	MSMEG_1140 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase)
MSMEG_6050 ABC-type transporter, periplasmic component (Solute-binding lipoprotein)	MSMEG_0468 Integral membrane protein
MSMEG_5876 H-N-H endonuclease F-TflIV	MSMEG_2157 Uncharacterized protein
MSMEG_3909 Mycobacterium tuberculosis paralogous family 11 (Uncharacterized protein)	MSMEG_1110 Probable conserved transmembrane protein
MSMEG_5153 Conserved hypothetical ala-, pro-rich protein (Uncharacterized protein)	MSMEG_2729 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase (EC 2.8.4.3) ((Dimethylallyl)adenosine tRNA methylthiotransferase MiaB) (tRNA-i(6)A37 methylthiotransferase)
MSMEG_3863 Pyridoxamine 5'-phosphate oxidase family protein (Pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein)	MSMEG_2728 Amino acid ABC transporter, ATP-binding protein (EC 3.6.3.-) (Glutamate transport ATP-binding protein GluA)
MSMEG_6592 Short-chain dehydrogenase/reductase SDR	MSMEG_2725 Glutamate transporter permease protein GluD
MSMEG_2737 PE-PPE, C-terminal domain protein (Ppe family protein)	MSMEG_2727 Glutamate binding periplasmic protein (Glutamate binding protein)
MSMEG_5503 Uncharacterized protein	MSMEG_2726 Amino acid ABC transporter, permease protein (Glutamate permease)

Conditions

KO_log.phase_rep1

Biological.replicate.4.of.6..negative.control

dcpA.knockout.rep2

M..smegmatis.Acid.NO.treated

Mycobacterium.smegmatis.Spheroplast.induced

Biological.replicate.2.of.6..isoniazid.treatment

Biological.replicate.4.of.7..ethambutol.treatment

Biological.replicate.4.of.6..isoniazid.treatment

Bedaquiline.vs..DMSO.15min

Biological.replicate.1.of.7..panaxydol.treatment

Wild.type.rep2.y

dosR.WT_Replicate4

Wild.type.rep1.y

MB100pruR.vs..MB100.rep.4

Biological.replicate.6.of.6..negative.control

WT.vs..DamtR.without.N_.dyeswap_rep1

Biological.replicate.2.of.7..panaxydol.treatment

Biological.replicate.1.of.6..kanamycin.treatment

Biological.replicate.1.of.6..isoniazid.treatment

rel.knockout.rep2

rel.knockout.rep1

Biological.replicate.1.of.7..falcarinol.treatment

WT.vs..DamtR.without.N_rep2

DamtR.with.vs..DamtR.without.N_.rep1

Biological.replicate.3.of.7..ethambutol.treatment

Biological.replicate.3.of.6..isoniazid.treatment

WT.vs..DglnR.N_starvation_dye.swap_rep1

X0.6..vs..50..air.saturation.Replicate.3

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1

X0.6..vs..50..air.saturation.Replicate.4

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep2

mc2155.vs.Dcrp1.replicate.2

X3dbfcy3plogcy5slide607norm

mc2155.vs.Dcrp1.replicate.4

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep4

Biological.replicate.5.of.7..panaxydol.treatment

dcpA.knockout.rep1

stphcy5plogcy3slide580norm

Biological.replicate.3.of.6..kanamycin.treatment

X2.5..vs..50..air.saturation.Replicate.5

stphcy3plogcy5slide581norm

WT_log.phase_rep1

Biological.replicate.2.of.6..negative.control

Log.phase.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

Biological.replicate.6.of.6..isoniazid.treatment

X4XR.rep2

X4XR.rep1

Slow.vs..Fast.Replicate.4

Slow.vs..Fast.Replicate.5

Biological.replicate.4.of.7..falcarinol.treatment

Slow.vs..Fast.Replicate.1

Slow.vs..Fast.Replicate.2

Biological.replicate.3.of.7..falcarinol.treatment

BatchCulture_LBTbroth_ExponentialPhase_Replicate2

Biological.replicate.5.of.6..negative.control

mc2155.pMind..vs.mc2155.pMind.6189.replicate.4

BatchCulture_LBTbroth_ExponentialPhase_Replicate1

mc2155.pMind..vs.mc2155.pMind.6189.replicate.3

X4dbfcy5plogcy3slide901norm

WT.vs..DamtR.N.surplus_.dyeswap_rep1

WT.vs..DglnR.N_starvation_rep1

Log.phase.cultures.without.induction.of.I.SceI.expression..T.0...Atc.

WT.vs..DglnR.N_starvation_rep2

Biological.replicate.1.of.6..negative.control

mc2155.pMind..vs.mc2155.pMind.6189.replicate.1

WT.vs..DglnR.N_starvation_dye.swap_rep2

BatchCulture_LBTbroth_StationaryPhase_Replicate4

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep2

Plogcy5plogcy3slide113norm

BatchCulture_LBTbroth_StationaryPhase_Replicate3

BatchCulture_LBTbroth_StationaryPhase_Replicate1

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1

Biological.replicate.3.of.6..negative.control

X4dbfcy3plogcy5slide903norm

WT.vs..DamtR.N.surplus_rep2

Comments