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[+] Show/hide bicluster #6 rows and columns.
bicluster 6
Phaeodactylum tricornutum
72x18
[+] Show/hide bicluster #6 rows (genes).
bicluster 6 genes
Phaeodactylum tricornutum
72
[+] Show/hide bicluster #6 rows (short gene names).
bicluster 6 short names
Phaeodactylum tricornutum
72
short_name
[+] Show/hide bicluster #6 rows (long gene names).
bicluster 6 long names
Phaeodactylum tricornutum
72
long_name
[+] Show/hide bicluster #6 rows (NCBI RefSeq gene IDs).
bicluster 6 NCBI RefSeq IDs
Phaeodactylum tricornutum
0
[+] Show/hide bicluster #6 gene upstream sequences.
bicluster 6 upstream sequences
Phaeodactylum tricornutum
70
upstream
[+] Show/hide bicluster #6 columns (arrays; conditions).
bicluster 6 arrays
Phaeodactylum tricornutum
18
[+] Show/hide bicluster #6 ratios.
bicluster 6 ratios
Phaeodactylum tricornutum
72x18
GENES GSE34988_Copper_2 GSE34988_Dispersant_2 GSE34988_Dispersed_oil_2 GSE34988_Dispersed_oil_5 GSE34988_Salinity_15ppt_4 GSE42039_light_0.5h_2 GSE42039_light_24h_2 GSE42514_dark_8hr_light_3hr_1 GSE42514_dark_8hr_light_3hr_2 GSE42514_light_0.5hr_2 GSE42514_light_16hr_dark_30min_1 GSE55959_BlueLight_6h_rep2 GSE55959_GreenLight_0.5h_rep2 GSE55959_GreenLight_24h_rep1 GSE55959_RedLight_0.5h_rep3 GSE55959_RedLight_24h_rep2 GSE55959_RedLight_6h_rep2 GSE55959_RedLight_6h_rep3
12632 NA NA NA NA NA 1.38693151467477 -1.24374660748524 0.384564955397353 0.615229868234933 -0.3259113025077 0.248167246087282 0.339352160531926 2.11771423338007 -0.521624154512294 1.8576295078514 -0.286188135414773 -0.10801100898298 0.224267153743489
14544 -0.460850574921632 -1.4506056721317 -0.823281368030994 -1.42050632918156 -0.31651971703348 0.312032566243092 0.543075646452647 0.0961010723597516 0.103124900746704 0.271851218471303 1.17336824870468 0.708337668367937 0.532277055207303 -0.533937280927099 -0.434650449166811 0.0417107127557433 1.04323452880049 0.681073404543221
14945 -0.100731948750849 0.0181702980139179 -0.227414980203033 -0.263831183850198 -0.243379390639475 1.44047440782177 0.895526883580783 1.19938550859997 1.98422627116985 2.6917611099758 1.18273309396632 0.415570315201609 1.00309307602456 -0.249970832062666 0.455726440962666 0.524191553907293 0.816035009257453 0.671725383537488
15692 -0.298054286668502 -0.245708180955142 0.0315419645799399 -0.583673196747702 -0.398852620657901 1.73821783448296 0.488093545272547 0.0442463118801555 0.881667264260013 1.37789250621084 0.886655695042289 0.636527544349697 1.28276507024221 -0.395617687775175 1.10423769529992 -0.237226337272481 1.23155255576105 1.45997066802014
16442 0.0936980279736955 -2.35798428397244 -1.44807449688363 -2.50709442797697 -0.711995963818564 1.09575508547839 -0.0334868524257412 -0.631047811327195 -1.37747686506682 -0.471523756439702 1.63079107753189 0.886798927488588 1.51932816975401 -0.682294839982188 0.66456299271211 0.113904786887565 0.926548000649038 0.836691567726376
16571 0 -0.234076283904205 -0.136506313631443 -0.955898266248043 -0.372391661896676 0.95560784947522 1.1660468470078 0.592144430773924 0.341314370698993 -0.75956514155968 -0.367359950715734 1.95087103873497 1.70201444439243 -0.298945075373737 1.8354853229156 0.52384630322833 0.640170960411901 0.947850226172191
16719 -0.782874770630744 -0.725714479905785 -0.438036306794786 0.639383101322265 -0.477554234104469 0.37304472158079 0.196275587712957 -0.233898957132031 0.689948627241377 0.831128895449165 1.34997653154204 0.808460755434193 0.826546886545622 -0.212497371579126 0.681327163166449 -0.18054192081509 1.23483431297567 1.01424333824747
16854 -0.959950444556827 -1.80870223854544 -2.10653452100739 -1.11538949325689 -0.852514662479547 1.90746497367171 0.862626412779567 0.509962084114562 1.1725357324813 1.18883631944411 -1.52874113196616 0.233377647823602 1.17648503446211 0.0975218872316255 0.527247854795418 0.160916706903967 0.31046447022755 0.0545340845109699
19329 NA NA NA NA NA 0.694334498294234 0.085769433045265 0.475245016079807 0.482351025501982 -0.451139660959013 -1.09573336941386 -0.491520064677018 0.543980249762722 -0.423711859170297 1.03963237916209 0.190933043118345 -0.567963703020676 -0.596262377941352
21207 -1.06022226722521 0.0412425192091637 -1.09506245749126 -0.24383078407569 -0.95865045780438 0.377393461079459 -0.510919076985715 2.7129972117924 2.87300137741506 2.22873303029849 1.06285232185546 0.875005617001425 0.318176708572607 -0.371996736001866 0.0787265513544488 -1.12084343204413 0.226399698825309 0.859869803209368
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22677 -0.0124171205861369 -0.42490479404113 -0.531213841994929 -0.458144483480551 0.614357994760465 0.352691519759921 0.612228460304338 -0.0823258852016743 0.760796223601698 1.79515539850966 0.987756797330629 0.694758255867939 -0.103403157206696 -0.162753401204608 -0.877321902831025 -0.0635185952491275 0.788905728302482 0.596897851316361
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34419 NA NA NA NA NA -0.148071886348976 0.729336213291083 1.89781280182474 1.60007547007298 0.291095298939692 0.20560048706901 0.119770448027089 0.917734113722898 -0.0518287279032832 0.901104949264185 0.272431033901536 -0.708240243951158 -0.690068851679544
34555 NA NA NA NA NA 0 -0.880648993927358 0.526946876578522 0.208581446139641 -0.214686410209374 0.0775788065559111 1.30284550836753 -0.00933253961722551 -1.18243012815835 1.10464749448209 -0.573073086543933 0.153287266492785 0.253037366152252
35003 NA NA NA NA NA -0.0552678135313044 -0.190223798499047 0.966606991977489 0.435849207435224 -0.0987853690217436 -0.491831549879471 1.40863430308466 -0.421049269761469 0.037003690793272 0.324734606429331 1.03150437877163 0.735049451064728 0.970283479537915
37393 1.03214423322309 -1.27423129080551 -0.413778241162898 -2.81915028102843 -0.270203550701234 0.969545178084024 0.376198340815122 -1.14751634395954 -0.984049696448453 0.626122171586604 1.02979876591061 -0.113254426643902 1.25231610833251 -0.167686605248748 1.35044435588351 0.360248183195256 0.927975432650309 0.764669992328841
37452 -0.166750128775293 -1.12766917270753 -0.260717769830489 -0.0646408707669581 -0.489004247399634 1.95021707067185 0.691369816956715 1.32976690260263 1.47550331820636 0.829260689190768 0.978277080787991 1.83448803608076 1.2566956174731 -0.283986853381741 0.0854354093245386 0.416029758804763 1.74422154670144 0.913353634797583
38754 -0.131586553410153 -0.452169897149809 -0.683657076933031 -1.1803107368835 -0.00700759040483029 0.0576420418239685 1.15933458127574 0.309630263324431 0.437809751960294 0.24739428179406 0.195222373577969 1.52235084453377 0.343455760254375 -0.131351130882723 0.867489596476166 0.914828566864909 1.67932524243904 1.69630174038449
38803 0.261205886108466 -1.54525559110766 -1.32291578636146 -1.37241667052569 -1.65620244943839 0 0.396810798717234 1.28815738192177 1.89871043928361 3.3255292459106 0.523559499766925 1.59382431722456 -0.4980943189025 -0.0211617660416185 -0.671758148777792 -0.108067587647797 -0.134875716115026 0.223166787869835
38948 -1.12322050269787 -0.676367419440486 -0.113834449306757 0.0329423639205633 -1.7268621144408 1.57429137599643 0.149386172490216 2.38776041872168 2.46683760544419 2.63785712129964 -0.314517551855346 0.180523758449346 1.31222662404161 -0.0789244876751284 1.41307431006496 -0.123604455630366 0.582767080691465 0.428087409508603
39217 -0.013880861582652 -1.30801172840439 -1.35532655681849 -1.38069088579477 -0.629518469670423 1.39916419097498 0.0766346971688385 0.103151368877966 0.372769613518844 1.28550732080125 -1.91857932926326 0.190113777584787 0.748058479248409 0.243302810388883 1.14056260382533 1.21797227402405 1.39276685545233 1.0600760121949
40043 -0.198608695673862 -1.03935812177566 -1.73515394361427 -3.60720207099811 0.177105190629945 0.676175600354764 0.789577602681253 -0.066698959083234 0.824473179279522 1.01989059545068 -0.666748624286165 0.606133221951507 0.625479590339418 -0.0572913975436692 -0.344005544188064 -0.265143054638351 0.585146290919798 0.502672069115179
40174 -0.008442635131832 -0.163358255290028 -0.436491800850391 -0.639775505773692 0.0879030594244166 0.245718564504925 -0.326495175381347 1.01046894738081 1.59045892229788 2.73044691272999 1.49884298725441 -0.0436063225560789 -0.669248504948648 -0.326341570491659 1.34416335645852 0.0411110194346531 -0.0725514261942142 -0.361472848264207
40535 -1.32593140072538 -0.843508547965441 -0.532627657801087 0.232935689931625 -0.56248293710474 0.814769092618721 0.271483471174325 2.43202735967474 0.74127550202621 1.44888242991177 1.55910682603699 1.57696558520199 0.412910891728055 -0.0692056183512938 0.359617608075765 -0.177428739099607 0.282701081810377 0.52567781584484
40830 0.915453499426072 -0.612600723597975 -0.379236104117144 -0.1130808357854 -0.309862894463845 0.687041313036871 -0.018024780274897 2.76826398392632 0.354975775077104 -0.780071695335451 0.503366557058393 0.652344355104377 0.309659399669249 -0.0874754992741367 0.0346913506377435 0.136906511471002 0.587456952487934 0.948557776390365
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41125 NA NA NA NA NA 0.631130534956593 0.184100470092782 -0.8020686506462 0.455850459395237 2.06613359295248 0.846045608423825 0.47766503125003 0.805974784523035 -0.983291882148043 1.10896503839575 -0.455173489096419 -1.14605932750189 -1.38473118901841
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41766 NA NA NA NA NA 0.58778017060849 -0.554449922408787 2.97030877589192 2.45745627941447 0.993131452767684 0.954961766650409 0.105121126601624 0.270100099116921 -0.443736479334816 0.377377675471859 0 -0.547175541255486 -0.481442687995197
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48314 -0.191388102085927 -0.248854803552436 -0.709125603064806 -0.203645181756662 0.457416660248675 0.675738177976375 -0.182495451028021 2.01542171988433 2.24110732587623 2.15240262531405 0.505876836838809 0.4921040951266 1.04411794840578 0.20148202887749 2.05775176654307 0.488184269168255 0.724741214126885 0.739496716098137
48660 -1.19475168289848 -1.30402509920104 -1.41295047738013 -0.371439931839931 0.222403023353467 0.0911608475485633 -0.240750960285897 0.988522881782052 0.576624188437231 -0.225209318955091 0.283923967305978 0.288667322854203 -0.385512304959226 0.358570942483952 0.598854347036498 0.712820589876553 1.16458432657622 1.29160879880235
48827 -0.331452371429545 -0.844768510510568 -0.364700021923043 0.0284022072399887 -0.260427695340985 0.313496336065257 -0.270041022164676 -0.575895860655168 0.147739099912305 0.976916427151272 -1.27627471378791 1.55910026777228 0.34956222540374 0.439403938870659 1.93640498064163 0.836675776460732 0.968855627075179 1.04193664812979
48855 -0.385994906005332 -1.81376737469568 -1.98207608955995 -2.6233566377818 -0.447486313866539 0.379343331646717 1.00706647191279 -1.77828133503945 0.468493272488675 1.48116281066551 -0.952663004022871 0.203621975478242 0.884025512364449 0.0872387514423662 1.47054433758471 0.546962706511186 -0.246295509921356 0.108601317981815
49117 -0.323929213949954 -0.0163797086849151 0.0786989275110723 0.00726475139106142 -1.05331533857969 0.704289027538028 -0.23135882827082 2.91858225843017 2.7801080183818 1.99334811210014 -0.353537378935368 1.46753102540265 0.249275928823444 -0.196957257515078 0.404215822687153 -0.152869442758518 -0.00616040544661533 0.0684471257079179
49564 0.454271460549488 -0.703252692203224 -1.17586431457666 -1.2842997580926 0.314769537285577 0.467914077133203 0.547518337276209 1.77761800417371 1.70834207130016 1.38371498007557 0.219725240167565 1.3639795855195 0.0955295829958051 -0.40407409412077 -1.78544038302911 -0.224220816811175 0.0619473924159152 0.0660776771881964
49750 0.232037407688055 -0.904716161924844 -1.14473518071491 0.217067175470945 -0.764600738189682 0.909175677470094 0.125204022259245 -1.42069097667619 1.57188409463262 1.94358613190027 -2.42512891907969 0.241400645291073 0.738220496281324 0.147958169938203 0.547606491534516 0.671741323241599 0.373315854428533 0.226263806308188
49763 -0.620295660309558 -0.206965920158381 -0.60521353940179 -1.15521140064694 -0.527898221127018 0 0.361231821328002 0.492557938532594 -0.297568949502863 -0.630676273287343 -2.27911975132931 0.990815103532865 0.74080144110382 0.39341537661927 0.691121515414893 0.890765257743261 0.0608793877904595 0.21539462198169
49857 -0.537878400610664 -0.974104476284664 -1.07992689643159 -0.0238028601350689 -0.372815296714031 1.25440368969157 -0.0764531086173584 -0.684435261973835 1.39499789167513 1.94792648959644 -2.4797987020483 -0.432915586366506 0.342591447205881 0.0815596870876734 0.545834357529934 0.413632082453558 0.0909572681826267 -0.00300070131792982
49932 0.249453177115381 -1.20890171664842 -1.19583042574154 -1.85578630143567 -0.312399939729363 1.19571162991058 1.05584631681813 -0.0928322616593857 0.996286625666674 1.23191742164173 0.228612538091545 1.60594078048453 1.30680248150559 -0.0332460271361294 0.813326565066364 0.448899137510631 1.31813216405425 1.04408934400412
50047 -0.551919590512924 -1.27740612911175 -1.81333455045671 0.414144025318195 -0.186270627636052 0.375763760865101 0.386733169004288 0.42115066544942 0.502240458077139 1.0577776176408 0.344102648972154 -0.862973393280087 0.245462739163295 0.110115211629778 -0.122099444535306 0.0505219522382918 0.1189616551474 -0.0715165641520882
50216 -0.258555403014858 -0.663168742181709 -0.367191631286486 -1.63577393688215 -0.752463282718314 1.0442537164174 0.965507540328179 0.274983935263861 0.928021248525069 2.05200699840829 0.938859235303387 1.32891507752172 1.66777211313835 -0.230298458746183 1.8531811890455 0.610035878869598 2.19728698252852 2.10434204230761
50343 -0.435337212319073 -1.06263754507687 -1.37636805575207 -1.34955746943382 -0.991650530972868 0.163624208691112 1.18466687677406 0.45185786411781 0.516062692283641 1.00981896222935 -0.000770828798696703 1.47399220244863 0.858649662948519 -0.093635293411277 -0.167360536464077 0.656074103690646 1.25262117956183 0.931971443614315
5043 NA NA NA NA NA 0.745109274537612 0.102147965902211 2.52836284720439 1.75871320235362 -0.434807064985628 0.336650389518264 1.26279467582367 0.0152646031227127 0 -0.514094172577841 0.511941991315157 0.148921053787229 -0.373537850735554
50562 0.426587240772104 -0.00898656431527793 -0.984188966629853 -0.877863170510599 -0.416593398213154 1.47486707444745 0.35752229644024 2.1311306693958 1.15649567885857 -0.761976656912053 0.221167998674249 0.819141837951271 0.356600493626401 -0.259188270624407 -0.174070260988995 0.410261512078002 1.07094345273601 1.23515794173578
50572 0.283478259715259 0.00691511360551504 -0.954421371368889 -0.477262465266 -1.12138257178179 -0.0182564067601876 -0.520845673025505 1.36530277225995 0.944430685302863 1.17798004736741 0.427354860510043 1.61897988662882 -0.414374083806782 -0.525507215037016 0.953894168269508 0.53555619101899 -0.32626032197965 0.00558292058712672
5104 NA NA NA NA NA 0.29839768019014 0.291641217630988 1.1280413783905 1.46168209733538 0.972974240600704 0.907942952969037 1.01159982340493 -0.143640065521136 -1.05800022590079 -0.202786679748875 -1.05394381534705 1.02753245970727 1.36054508560262
54940 -0.55650265749548 -1.79289912441952 -2.28801845929889 -2.60306981917212 0.244868000780311 0.99123917908192 0.214613046913845 -1.18317882557766 0.596775842022533 1.45174847184976 -0.640615709160437 0.58069258351763 0.790882619810256 -0.0747288597820731 0.339237972736848 0.285506633126288 0.963035398312567 0.937758776862409
5537 NA NA NA NA NA 1.22537466883859 -0.664898175792486 1.15379376840149 1.3298352696372 0.128896477518335 -1.96562918886676 0.0175111089498323 0.294365030330816 -0.358390733145384 0.836728719289643 0.236424910121288 0.676643564538489 0.470261714076813
5629 -0.338132555666331 -0.284504635673519 -0.68913527153856 -0.719592394128895 -0.207802941239358 1.84679821608553 1.29003441756213 0.693900966611673 1.43299333800134 1.54925478600174 -1.16962793026897 1.53931325911401 0.944599008647976 -0.191354513657099 1.57381530327259 1.60553249197387 2.37359930626474 1.67863978132039
8772 NA NA NA NA NA 1.40667416188886 -0.460675454408873 1.30453664671531 1.87537211496437 2.61195195874064 -0.250381969876235 0 1.38838614176924 -0.236339842785806 1.24700615432052 0.520737377212883 1.18630214811714 0.981031207414532
[+] Show/hide bicluster #6 motif PSSM #1. bicluster 6 motif PSSM #1 Phaeodactylum tricornutum 24x4
POSITION A C G T
1 0.25 0.75 0 0
2 1 0 0 0
3 0 0 1 0
4 1 0 0 0
5 0 0.75 0.25 0
6 0 0.25 0.75 0
7 0 0.75 0 0.25
8 0 0 0 1
9 0 0 0 1
10 0 0 1 0
11 1 0 0 0
12 0 1 0 0
13 0 0 1 0
14 0 0 0 1
15 0 0.5 0.5 0
16 0.5 0 0.5 0
17 0 0 1 0
18 0.25 0 0.5 0.25
19 0 0.25 0.25 0.5
20 0 0 0 1
21 0 0 0.5 0.5
22 0 0 0 1
23 0.25 0 0.25 0.5
24 0 1 0 0 [+] Show/hide bicluster #6 motif PSSM #2. bicluster 6 motif PSSM #2 Phaeodactylum tricornutum 19x4
POSITION A C G T
1 0 1 0 0
2 0 0 0 1
3 1 0 0 0
4 0.5 0.25 0.25 0
5 0.25 0 0.5 0.25
6 1 0 0 0
7 0 1 0 0
8 0 0 0 1
9 0 0 1 0
10 0 0 0.75 0.25
11 0.25 0 0 0.75
12 0.25 0.75 0 0
13 0 0 0 1
14 0 0 1 0
15 0 0.75 0.25 0
16 0 0 0 1
17 0 0.5 0.5 0
18 1 0 0 0
19 0 0 1 0 |