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[+] Show/hide bicluster #8 rows and columns.
bicluster 8
Phaeodactylum tricornutum
29x25
[+] Show/hide bicluster #8 rows (genes).
bicluster 8 genes
Phaeodactylum tricornutum
29
[+] Show/hide bicluster #8 rows (short gene names).
bicluster 8 short names
Phaeodactylum tricornutum
29
short_name
[+] Show/hide bicluster #8 rows (long gene names).
bicluster 8 long names
Phaeodactylum tricornutum
29
long_name
[+] Show/hide bicluster #8 rows (NCBI RefSeq gene IDs).
bicluster 8 NCBI RefSeq IDs
Phaeodactylum tricornutum
0
[+] Show/hide bicluster #8 gene upstream sequences.
bicluster 8 upstream sequences
Phaeodactylum tricornutum
28
upstream
[+] Show/hide bicluster #8 columns (arrays; conditions).
bicluster 8 arrays
Phaeodactylum tricornutum
25
[+] Show/hide bicluster #8 ratios.
bicluster 8 ratios
Phaeodactylum tricornutum
29x25
GENES GSE12015_Si_free_22v19_2 GSE17237_highlight_30min_2 GSE17237_highlight_3hr_1 GSE17237_highlight_48hr_2 GSE17237_highlight_6hr_2 GSE31131_Cadmium_0.12mg_1 GSE31131_Cadmium_1.2mg_1 GSE31131_Cadmium_1.2mg_2 GSE34988_Ammonia_1 GSE34988_Ammonia_4 GSE34988_Copper_3 GSE34988_Dispersant_2 GSE34988_Dispersant_5 GSE34988_Dispersed_oil_2 GSE34988_Mixture_5 GSE34988_Oil_5 GSE34988_Salinity_15ppt_4 GSE42039_light_0.5h_1 GSE42039_light_0.5h_2 GSE42514_light_10.5hr_2 GSE42514_light_15.5hr_1 GSE42514_light_16hr_dark_30min_1 GSE55959_GreenLight_0.5h_rep2 GSE55959_GreenLight_6h_rep3 GSE55959_RedLight_6h_rep3
12510 -0.582686159661373 0.0690334972800302 -1.22375072752534 -0.552888182888224 -0.822421129823193 -0.454952044984995 -0.435002090967671 -0.31152094376135 NA NA NA NA NA NA NA NA NA 2.58774521096547 2.42760642233896 -0.98879054457377 0.132548417752374 0.355300673180287 0.70612354315653 -0.613872450884432 0.131139031439468
16648 0.0918596020780364 -0.0558136478916527 -1.57171849414135 -0.596369204659007 -1.2641602653685 0.0703771430877368 -0.666145495649976 -0.829967901039631 1.40047531625353 0.503622071569887 -0.561958707782824 -0.389917589410729 -0.624284492203894 -1.09863163710918 1.5267873466112 -1.26853787137324 0.38490464793817 1.77392453806585 1.73614394839446 1.15664694577266 -1.00741439889563 -0.0113231305344218 1.0958671451114 0.673847636257242 0.423739062975995
18228 0.394432848799064 1.30849529931079 -0.285842404013086 0.894741404832159 -1.00292872207889 -0.923261583858957 -0.847997971623094 -0.122062727055266 NA NA NA NA NA NA NA NA NA 2.61487212804795 2.62981113729259 1.30027132986712 0.115680951099653 -0.142047803155793 1.58426673853202 -0.960012363125231 -0.264292587567056
31819 1.30978528898233 0.370447254665021 -1.11004889233954 -0.681942136052851 -0.539097733583116 -0.548304060757452 -1.1526772810178 -0.403109996220516 NA NA NA NA NA NA NA NA NA 1.61199829242808 1.50503196396601 -1.79195672207463 -0.571379277804516 -0.599575588124903 0.505009832427439 -0.230965583337441 -0.0613952121165922
32041 0.300522973086798 1.43900034549166 -0.314269724649014 -1.24798857431255 0.13574438842233 0.4497621800961 1.16057490290976 -0.289383413155144 NA NA NA NA NA NA NA NA NA 1.54221529157951 1.99047104843426 -2.87884506890788 -0.562786337740634 -0.658900567701781 1.13989468814205 -0.950852703685556 -0.856212286877022
34681 -0.189177582013194 1.19283771538294 -1.18020275150519 0.0552573711935857 -1.19855250000575 -0.258309999331974 -0.206365295400778 0.153718167259495 NA NA NA NA NA NA NA NA NA 1.53849994947444 1.36533599921495 0.610290235356586 -0.733607391752726 -0.311310141832348 0.561773967522048 -0.502007687572422 -0.0725599088392348
35854 NA 0.612113234578566 -1.1989392746245 0.0353490289346596 -0.210012806421305 NA NA NA NA NA NA NA NA NA NA NA NA 1.79283973922446 1.92545420047465 -1.5136864772457 -0.261454265946766 -0.248760927940371 1.42406159224321 -0.351955796960949 -0.491112725946038
36426 0.478627825496935 0.588099572264469 0.86965139322486 -0.616575498599432 -0.162967303759405 0.0528477484304985 0.408391947266672 0.278605082016587 NA NA NA NA NA NA NA NA NA 2.14758938177899 1.5940104710544 -2.31222842014603 -0.974007595286006 -0.31749631814233 0.773144009246164 -0.0848399471785139 -0.77116803130563
37468 0 1.06248989626263 -0.524674484701805 1.05428421392496 -1.8822927923493 -0.482016771664717 -0.646544647574434 -0.334278984230524 0.906857080276691 0.976792493374357 -0.552266859201148 0.012679331256012 -0.000772908539288214 -0.168809386277606 0.438932640942607 -0.4550214164435 -0.119476457174898 3.15802510188661 3.05035684446231 -0.438476805995351 -0.739820877361552 -0.87366990139484 0.639691870651842 -0.205876006737173 0.273298594056142
37769 0.069398352525787 0.971758587544028 -0.126232638615547 -0.109196030191027 -0.842153589865175 -0.0288890167923564 0.0752574515569545 0.133779626947124 -0.287423952314806 0.837813308262231 -0.295364289832031 -0.882922089128062 -0.539670714499042 -0.933834214047482 0.987167985063143 -1.2930816073501 -1.69659522622058 2.00827098137486 1.98549165566819 -1.063601710434 -0.0654462973579962 -0.764163335052367 1.52930146880516 0.653495669159363 0.95843912410298
38448 0.111062791027405 -0.359545914759156 -1.6826042279455 0.21411822762131 -1.57195358016099 -0.669634640370219 -0.512326760706852 0.0449039876074754 0.851228043176299 0.824342068442398 -0.660854443214108 -1.09177243323417 -0.841955875646637 -0.589623857382691 1.90797583927814 -0.106002010005656 -0.632873030992314 0.607282284036039 0.657191092075661 -1.11648730952295 -0.117024344822981 0.134151841071735 -0.131599196716151 -0.0441282212176139 -0.0961745471782146
38498 0.00671377752031314 0.834121804282715 -0.284777112972919 -0.56222576093337 0 0.143541910049477 -0.0592893236690347 -0.00949312068271829 -0.639042614989885 1.35147061174571 -0.860292839948564 -0.934239419448625 0.0201627847200077 -0.485184337426323 0.582007211343978 -1.11280487613587 -0.451261081399509 0.674395546280209 0.743502391656879 -0.607105158832373 -0.768096457275646 -0.38154980371077 0.251413279714442 -0.25553634733716 -0.110622736299629
39448 -0.8815236122805 0.826319106077747 -0.527828154772492 0.0540741101680255 -0.67894987379394 0.204452302896624 -0.0232805065241951 0.400529480399421 0.20010316790884 -0.0324511864632127 -0.65228613675571 -0.606568192061045 -0.835073432359347 -1.07631276865291 -0.0603678105360738 -2.26999367203317 -0.735759324252568 2.34227468654513 2.37873579668068 -0.193993576318179 -0.324562585800059 -0.506231364027042 1.65531479495496 -0.81278018254465 -0.449145164755154
41116 1.16669328613364 1.32990431830342 -1.73716791136809 -0.920042469823452 0.00011442350596225 NA 0.621649454870876 0.421655991196074 0.404851138039449 0.712320712462666 -0.408092947140555 -0.0313180778498644 -0.0981104755744848 -0.392641751815634 0.547295662896483 -0.878742556236949 -0.420232815923611 2.13935316537094 2.03157820367069 -1.71282382291916 -0.546702695223582 -0.31110003361064 1.49424640837788 -0.23919216723637 -0.0375141821164945
42603 -0.161126416933457 1.65611887480288 0.219272510208769 -0.342684912762394 -0.490873117579837 0.262740866572542 0.139036121331932 0.307441986073939 NA NA NA NA NA NA NA NA NA 2.16080762621929 2.1857311504957 0.468945243579838 -1.01174429030326 -0.981504394280694 0.25865642579717 -1.20336399913744 -0.126411753405648
43987 0.966124036472099 1.06546366116862 -0.565507066997574 -1.98504319971007 -0.593218838516103 -0.122857266697208 -0.361869022202167 -0.023892371220377 -0.82917062979507 0.482578881314622 0.681347483616756 -0.900408600867935 0.526640306977262 -0.289943128321195 1.525099673232 -0.017681334453014 1.21760577082247 2.14125664189172 1.83760168988975 -1.03320293645721 0.78974175753317 0.555767145054465 1.65193125210554 -0.149189564483107 -0.76956091451781
44327 -0.260586330181304 -0.410983383183417 -1.29975592270966 0.0937943680816024 -1.17683995723781 -0.839560640227514 -0.899522464385131 -0.855520797229703 NA NA NA NA NA NA NA NA NA 1.25072678524598 1.38893468670829 2.30197397784875 -0.654238597031503 0.237861662907777 1.35167708150588 -0.0835639246675202 0.760790731989613
44814 0.448283313536223 0.129492555651295 -1.02055361904147 -1.17354679025658 -0.526245574342978 -0.137477664458283 -0.0287255405204844 -0.433610334309974 NA NA NA NA NA NA NA NA NA 2.24145721401807 1.93181329039548 -1.90258808448085 -0.289742129434343 0.312621452533483 1.99082015725862 0.236891076819436 0.196395913834256
45057 -0.0477773758907049 1.22284174829898 -0.185470427366142 -0.429579172128284 -0.771914164196993 0.261695529535432 0.470741736680882 -0.174885383383596 NA NA NA NA NA NA NA NA NA 2.25229445913143 2.55257668721161 -1.16369796445091 -0.139477188284997 0.124472819763878 1.17062481988262 -0.249510366876721 -0.837418121460662
45608 -0.44209052384093 1.76485796406138 -0.0702299137581341 -0.623030761938251 0.315553599156283 -0.0112773039513212 0.21974431383001 0.221272136795603 NA NA NA NA NA NA NA NA NA 2.18344157581585 1.04096400645678 -2.02212095894264 -1.17700691487425 -0.667816847986429 1.05897388668999 -0.54646543449528 0
46353 0.666540132790638 0.749389230205461 -1.21171896482048 0.266836006472224 -0.36872736201951 -0.507277610228221 -0.0484915685704751 0.114436843258085 NA NA NA NA NA NA NA NA NA 2.08231956789848 1.61721745600205 -1.18855659718589 -0.243237078777065 -0.665670595554165 1.08237423484471 0.181073634205315 -1.47714777792883
47106 0.740783299837888 0.708883300985027 0.128733864342944 -1.23838796714573 -0.955278754903316 -0.164509615166136 0.00170547831419761 0.168659993106097 1.02607191925027 0.999131706837496 -0.489060924999041 -0.920848215529639 -0.670527697406505 -0.417686644111805 2.08495151634427 0.0669108244473824 -0.461023065247802 1.49181504685887 1.47576388460303 -2.20104338226973 -0.952175903474705 -1.20685640986944 1.30408682730313 0.0513885585461525 -0.00132595470259391
47217 -0.306368118613478 -0.372873205245651 -2.21887448916622 -1.25951149698089 -0.408369785227239 NA NA NA NA NA NA NA NA NA NA NA NA 1.83521992172432 1.7551069818585 -1.92919676116976 -0.112494328656391 -0.201916140475054 1.15596835738478 -0.252996134353609 0.177924308544255
47293 -0.447881987960448 0.680920605572998 -0.973140261004002 -0.731903821220573 -0.427960184386013 -0.441722830355352 -0.300455107675303 -0.662096714728887 0.0753105354419043 1.19804605990728 0.529142618280438 -0.29973750466544 0.224001066795445 0.15406746791873 0.915705460853805 0.000789044811015225 0.278037913096412 1.35491215496014 1.29947737015849 -2.38459661155864 -0.582292333324829 -0.299560139902511 1.02532704146946 0.117105930269109 0.623894806496997
48726 0.577968333207812 0.387868557792767 -0.334288167839205 -1.10051830508975 -1.07834634330027 -1.35359727246532 -1.95196972882076 -0.568291032527399 -0.0783889796905455 0.693799474037201 0.321790223850427 -0.349753489570143 -0.618656989839007 0.107723970414531 1.86622997023242 0.0577558226484073 0.418974090242716 1.98325031531752 2.08731636028581 -2.0847353065436 -1.15546096961944 -0.591691163090952 1.21756732085595 -0.369604360963443 -0.153641064400764
49578 0.169907898744172 0.0672131315905667 -0.757503380446528 0.292225757033014 -1.76834931636236 -0.592893843225574 -0.521537148188348 -0.647796888420779 0.427656113338921 0.591480992510105 -0.0671166000757538 -0.835708129994368 0.263511523417174 0.193950133168906 1.70689016090058 -0.849090498264787 0.19985388156662 2.05069636657038 1.96657856846345 -1.83369991962552 0.334281446947015 0.316944713235211 1.69057000522011 -1.52103554202477 -1.40846419369045
49797 0.883914685399555 0.157040115580918 -0.692378159747532 -1.03359167502033 -1.10295999050713 -0.0367279684688536 0.361707807442868 0.102191003009967 1.9199087101837 1.37741808392105 -0.235149113236977 -0.0268653152344576 -0.61188026470255 0.0440484721091059 1.64720338029806 0.173126812278578 0.338487715224731 1.64112199375785 1.612850801861 -2.72370618546591 -1.55311051391872 -1.46380967209381 0.624559756877206 -1.0652440260577 -0.967983856945589
7957 -0.917681139252908 1.16511828313037 -1.43464619163928 NA -0.127465068332927 NA NA NA NA NA NA NA NA NA NA NA NA 1.85768922046519 1.48343030233278 -0.273887298085312 -0.685031193855875 -0.956987737736912 1.09023398877445 -1.68625864583756 -1.77757059043046
c108629-107691_cytochrome -0.00964989865229238 0.782218584002406 -1.64376359031917 0.136673625316511 -0.201291982852075 NA NA NA NA NA NA NA NA NA NA NA NA 1.38613927725596 1.53865740245999 -0.0277863504699072 -0.193755004590083 -1.216342398566 0.579570698238173 -0.858661900419091 -1.18779535910451
[+] Show/hide bicluster #8 motif PSSM #1. bicluster 8 motif PSSM #1 Phaeodactylum tricornutum 14x4
POSITION A C G T
1 0.5 0 0.5 0
2 0 0.9 0 0.1
3 0 0 0 1
4 0.3 0 0.6 0.1
5 1 0 0 0
6 0.1 0.6 0 0.3
7 1 0 0 0
8 0 0 1 0
9 0 0 0 1
10 0.1 0 0.6 0.3
11 0.9 0 0 0.1
12 0.5 0.2 0.2 0.1
13 0 0.1 0.5 0.4
14 0 0.1 0.9 0 [+] Show/hide bicluster #8 motif PSSM #2. bicluster 8 motif PSSM #2 Phaeodactylum tricornutum 20x4
POSITION A C G T
1 0 0.428571 0 0.571429
2 0 0 0 1
3 0 0.571429 0 0.428571
4 0 0 0.428571 0.571429
5 0 0.428571 0.571429 0
6 0.142857 0 0.142857 0.714286
7 1 0 0 0
8 0 0.857143 0 0.142857
9 0 1 0 0
10 0.285714 0 0.714286 0
11 0.142857 0 0 0.857143
12 0.571429 0 0 0.428571
13 0.714286 0.142857 0 0.142857
14 0 1 0 0
15 0.714286 0 0.142857 0.142857
16 0.857143 0.142857 0 0
17 0.714286 0 0 0.285714
18 0 1 0 0
19 0.142857 0 0.714286 0.142857
20 0 0 0 1 |