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[+] Show/hide bicluster #13 rows and columns.
bicluster 13
Phaeodactylum tricornutum
25x36
[+] Show/hide bicluster #13 rows (genes).
bicluster 13 genes
Phaeodactylum tricornutum
25
[+] Show/hide bicluster #13 rows (short gene names).
bicluster 13 short names
Phaeodactylum tricornutum
25
short_name
[+] Show/hide bicluster #13 rows (long gene names).
bicluster 13 long names
Phaeodactylum tricornutum
25
long_name
[+] Show/hide bicluster #13 rows (NCBI RefSeq gene IDs).
bicluster 13 NCBI RefSeq IDs
Phaeodactylum tricornutum
0
[+] Show/hide bicluster #13 gene upstream sequences.
bicluster 13 upstream sequences
Phaeodactylum tricornutum
25
upstream
[+] Show/hide bicluster #13 columns (arrays; conditions).
bicluster 13 arrays
Phaeodactylum tricornutum
36
[+] Show/hide bicluster #13 ratios.
bicluster 13 ratios
Phaeodactylum tricornutum
25x36
GENES GSE17237_highlight_12hr_3 GSE17237_highlight_30min_1 GSE17237_highlight_3hr_2 GSE31131_Cadmium_0.12mg_2 GSE31131_Cadmium_0.12mg_3 GSE34988_Ammonia_1 GSE34988_Cadmium_1 GSE34988_Cadmium_4 GSE34988_Control_6 GSE34988_Dispersant_1 GSE34988_Dispersant_2 GSE34988_Dispersant_3 GSE34988_Dispersant_4 GSE34988_Dispersant_5 GSE34988_Dispersed_oil_4 GSE34988_Oil_2 GSE34988_Silver_3 GSE34988_Simazine_3 GSE42039_light_24h_1 GSE42514_light_10.5hr_1 GSE42514_light_15.5hr_1 GSE42514_light_15.5hr_2 GSE42514_light_16hr_dark_30min_2 GSE42514_light_16hr_dark_4hr_1 GSE42514_light_16hr_dark_4hr_2 GSE42514_light_16hr_dark_7.5hr_1 GSE55959_BlueLight_24h_rep2 GSE55959_BlueLight_6h_rep3 GSE55959_GreenLight_24h_rep2 GSE55959_GreenLight_24h_rep3 GSE55959_GreenLight_6h_rep1 GSE55959_GreenLight_6h_rep2 GSE55959_RedLight_6h_rep1 GSE55959_RedLight_6h_rep2
12243 0.745576434099858 -0.194552638661924 0.198262272365015 -0.337636607202687 -0.423317823702263 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.910682706236857 0.7942834576437 0.912302083041615 0.808772858512839 -0.166861929510172 0.198832189156905 0.594345019298142 -0.28476099251666 -0.491891604874791 0.734135358959481 0.34402038002372 -0.583295114320331 0.51740847955667 0.654069667813695 0.163481035786346 0.987454149400982
13078 0.232626739195826 -0.08714403022311 0.421202064580825 0.339884800029723 0.157162873577803 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.699797422974814 0.000690307356099355 0.381871261401917 -0.627233780828323 -0.0518471967137482 1.22554413320617 0.346756564640852 0.508664165178956 -0.44389189049829 0.263712084541313 -0.0456940868347409 -0.725004957108654 0.619573829010981 0.465835825040389 0.865291262189035 0.377871039982452
22353 0.279553614928837 -0.90372704013037 0.23093195564086 0.0760194309204136 -0.307499490578657 -1.95822883461674 0.126444843753307 0.419629887233484 0.185178745130953 0.0195343861048831 -0.212002178051106 0 -0.178100548011248 0.500951137385143 -0.412244014524598 -0.51576619481672 0.137846478149019 0.915266670579655 -0.256753483850452 0.914888655606612 0.534461187171261 0.408476756070238 0.241602089212201 -0.206960172014635 -0.0646255519321726 -0.521294380201012 -0.490796933990848 0.447754755914894 -0.272226944909629 -0.746855235843431 1.01443144109708 0.609560474011973 1.09700330294675 1.20590488691339
2527 1.0433061623594 0.7254485035707 0.9575518031954 -0.72060221779105 -0.891328152332484 -0.736295716541212 -1.01629937267795 0.0473982953638001 -0.144708073668127 -0.254286378307292 -0.579362386854413 -0.179116066395667 0.256967107896303 -0.118050371816513 0.654817560438115 -0.103089515532046 -0.23500710549845 -0.207977601115483 1.44416225973357 0.654506956793516 0.672893957019995 0.412411881214782 0.426520746293 0.0850816800296751 -0.0721344150589437 -0.262539898389752 -0.249832180983755 1.06697463763987 0.922693744697645 -0.0756257058357036 1.4122980862707 1.33697257630993 0.769518432848685 1.26365712842905
29042 0.779272827501848 -1.05780798676369 0.182953998203101 0.156138340651693 -0.14351618241063 0.280855633173655 -0.130977815166112 0.501570981631612 0.0151859828408732 -0.215498598967315 0.240381268457299 0.152026396033319 0.45684009907027 0.250707145894819 -0.160630465551687 -0.104715770836976 0.244879976357204 0.555521795456857 0.061416752246259 -0.739332322385849 0.630886788577187 -0.252608386085493 0.64105877158644 0.275196045282404 0.0408227269127796 -0.0469115638305111 0.0634576925547988 0.0665141641945108 0.240762586752692 -0.684242873231501 0.355017622160696 0.513782988012178 1.16178032994008 1.09795041800043
29793 0.443775143682075 0.53515193174753 0.50388458826031 -0.069782033039015 0.116997929442581 0.692644688786522 0.185909931336323 0.618873157407113 -0.0535475234001157 -0.574244292431348 -0.459542063435687 -0.548083307564293 -0.598305157197706 0.0744639532373061 -0.0156732603679617 -0.207906158556475 -0.341234612134731 -0.681544840269379 1.03912128345528 -1.41501298079926 0 0.649198398767538 0.0635530614265981 -0.319822260908624 -0.213786480972736 -0.105854303582188 0.218083840991112 1.16333843536185 0.87037836554458 -0.137659685040445 0.869835616117396 0.75033544881347 0.661668695922781 0.655085469319131
31322 0.443104455456954 -0.0729523998167832 0.826226490215867 -0.268338217254856 -0.163518290079166 1.01738101769949 0.454605481417258 2.08247291582849 0.0555995721080868 -0.651426917276187 -1.10103294555054 -0.813746414979922 -0.676292367988032 -0.37044331876833 -0.431045809979971 -1.52644987318301 -0.45742413957616 0.018131691378772 1.18187604436593 -0.118796192248086 1.04447038205241 0.576962625914307 0.784827114154036 0.461079023620022 0.523480988364856 -0.0807888135108018 -0.520914342578419 1.14112643757383 -0.213842679688524 -0.989382058166733 0.860193988613037 0.961998495290785 0.733487739662002 0.481547549370055
33304 1.15893465860394 0.59024883825524 1.17375809291656 -0.231207862805498 -0.154937430780081 NA NA NA NA NA NA NA NA NA NA NA NA NA -0.636412376584229 -0.00886143392797548 -0.018620637757111 0.216469778095904 0.149482636750443 -0.133627923512183 -0.0213314624125638 0.159063546629653 0.0793260432290932 1.14971980500791 -0.416108362112887 -0.0701780966611623 0.00988845197827468 0.383737977269713 -0.04296695122462 -0.120869107688436
33535 0.342252462693645 -2.12124553655698 -0.0441561917435748 -0.0443695435975358 0.0771130020478537 -0.723960189467994 0.494548516498855 0.194522414972381 0.205315751563772 -0.354653165365269 -0.383320400574592 -0.4365451026773 -0.173542204390902 -0.150098604856676 -0.190985994205322 -0.36196052325726 0 0.36810249642909 -0.548663080157215 -0.0582020523215331 0.426056800782992 0.0783149856346192 0.693355606193389 0.652176744508144 0.50862094569765 0.239672290504144 -0.712428833660755 0.0801677083201921 -0.294669045340754 -0.292963300373185 0.413978176400468 0.620127050987522 1.34830958411976 0.940188792948486
35862 0.171571713543176 0.674642426537489 0.692557781285336 -0.0387324923570918 0.160134900833929 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00400472483422693 -0.663115327656699 0.270293697435689 -0.115694710603951 0.750938684240678 0.0571218023292711 0.610428910547196 0.133408578379613 -0.457881393988062 0.693383224184712 -0.143933532281194 -1.24558795441769 0.347249281014644 0.307864739540269 0.671752158461966 0.72413678476266
36381 0.0748060479164075 -1.6910478880401 -0.381869288424307 -0.0177268964781945 0.0656572996583806 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.126612651984562 -0.219278620053548 -0.147893083639171 0.108138162630748 0.4179405439122 0.337683831344998 0.568629648625278 0.00783575693840904 -0.328253625272124 0.413802451911903 0.320836775879468 -0.19468001456071 1.0327662631241 0.946548609641649 1.02027283679178 1.28885641084523
39074 0 0.232334160239237 1.0292791931593 -0.307667787508012 -0.179310945631862 -0.443887664442648 0.331093253003507 0.438790077002615 -0.622749523058358 -0.538315694372218 -0.423706888623388 -0.946570948946638 -1.09272887325542 -0.719306326201192 -1.07815182537504 -1.36761602541684 -0.332460341531602 -0.173029484931582 0.523307397948764 -0.45080302938117 0.0652502659660194 -0.471529610204149 0.196951158673579 0.312221533129152 0.266160999283611 0.080187404751397 -0.245610274534558 0.708080473004632 0.807942789565074 -0.185155272129224 1.10173098881968 1.11256382780623 1.29487096725505 1.07025156688845
39656 0.329188903540896 0.887390158547299 -0.294005474589357 0.0802149801650248 -0.380292591438705 -0.933174473706932 -0.320719982170069 -0.863443545489115 -0.489493584352543 -0.0834554340982466 -0.0968948417888955 0.0980789545113253 -0.213716446651776 0.188839216332055 0.813389517508348 1.05359594062542 0.125274275204009 -1.42674278919636 0.698840747735544 0.140004099199505 0.0662345415377873 1.12182918465048 0.136459007881316 -0.30123912529073 0.302799079649652 -0.986624972145807 -0.318396898222195 0.25894253255927 1.08588058453604 -0.472348213749826 0.345383708690446 0.160393652450581 1.41447921554556 1.94388706936086
41349 0.231633306867463 0.00317666766773529 -0.170654042932389 0.112560133789935 -0.34843302122229 -0.22064263050436 -0.273990060672668 -0.123579503392495 -0.0661987039145798 -0.249075998016713 0.0312016875135699 -0.0577187626305148 0.0514893905355899 0.5850583618072 0.195445439889659 0.433706422351976 -0.433260300333086 -0.567642667513225 0.0558407319695727 0.260338044607522 0.554437970524786 0.518992926249926 -0.245660603394205 -0.362403486366781 -0.235941410005382 0.0818628229693596 -0.701738600666578 -0.10539014249827 0.404180192539263 -0.706053864140312 0.990858411640077 0.474157575627405 0.361870146285429 0.216348173085021
42708 0.212226225773669 -0.0771492163861485 0.447209929128002 -0.479143593326884 -0.232450094986956 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.338231521800577 0.738662165617882 0.571559424093161 -0.0180232848969735 -0.0795564552854051 0.276142066595013 0 0.550386601628411 -0.59371451611986 0.166710976498735 -0.297190587892132 -0.794054502125918 1.00817791115621 0.168844508942463 -0.22453681843784 -0.108466730196383
44479 1.37420899639242 0.86898060403515 0.588722845064037 0.243037846842089 0 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.621166165647295 -0.686006939376932 0.910280068445501 -0.30198008648418 0.829111979203824 0.638972677294992 0.246133651557121 -0.0884370512414156 -0.0948090269809081 0.0762271303577781 0.251439938501092 -0.347882016187446 0.652952233544605 0.426573646471952 0.511647232416793 0.536110306009763
44658 0.56508003036298 -1.55756338817504 0.548498741853996 -0.200139530686441 -0.433566667715222 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.826703532496887 -0.185550387461875 0.887311097399166 0.897580758149661 0.938275482323488 0.1736161603895 0.460000399414757 -0.748391215712508 -0.469877565303274 0.218094260193937 0.138381793260702 -0.245091157647051 1.17658247289099 1.17658247289099 0.936796013114403 1.14149494045819
45794 0.333560927936648 0.320489635815648 0.127631578138565 0.161006020598097 -0.347615233555815 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.945204765857468 0.629234483600721 0.742020103870722 0.859809661055593 0.836978256028553 0.0379557592816919 1.37614187097153 -0.362303615752094 -0.0564589678324347 0.730278661217289 0.0634462436984828 -0.0871716338862607 0.431189696168286 0.698147387538939 1.09636482822192 1.14687437552792
47823 0.788341825252189 -0.103678644880362 0.365329369461219 0.284601401663393 0.28174108560774 0.879137523025354 0.661941487376936 0.282302308954434 0.626742674784139 0.770823032720493 1.13789721989505 0.0716213712984644 1.03560445973375 -0.47624468707757 -0.00212939506502774 0.858336843665325 -1.33610255858532 0.356647528622137 -0.409311530633039 -0.441090668210466 -0.885116198906444 -0.367702255852028 -0.20586608750575 0.393227889517526 0.444381790696406 0 -0.797881865631897 -0.00875591130631107 0.237106860053661 -0.20590984998645 1.05532027571682 0.911185322338527 1.06342518429015 1.24295767649584
47844 0.391583236448523 0.0099107327138739 -0.049525819756123 0.117611975814147 -0.426772031205574 -1.46215264444299 -0.188931806835829 0.493155854395935 -0.123445873787592 -1.49837379331772 -1.51737407435493 -1.01539741229655 -1.36944304729343 0.690497335638305 -1.2488030619912 -0.933391763578002 -0.38853138387447 0.955103554435387 0.502589768419064 0.371846193639361 0.951974025646182 0.945588573631971 1.13677859336874 0.432579426425988 1.07044426293076 -0.378055351961622 -0.3254120643411 0.0995004888225139 0.345202474343563 -0.3254120643411 1.16674425467263 0.782611931606701 0.98492531124306 1.46067148482546
47894 1.30142516714915 -0.045956179128674 0.534841792463163 -0.60729638383483 0.176503038107515 -3.2147280385535 -0.125455777786068 -0.117574631105739 -0.117297064231533 -0.288189119573402 -0.287303775131138 -0.167034014834669 -0.295745236166239 -0.0339257432628467 -0.126489742076954 0.414869062906394 0.229194070281616 -0.801144007998801 0.371500980609265 0.459390263899911 0.062553943478064 0.171620095173375 -0.00727506371995856 -0.304202512268553 -0.182165773819528 -0.151119195246372 0.158414237113956 0.9688879224373 0.589269943096182 -0.327652132666842 0.86561317654827 0.467213801413426 1.43496713226057 0.822499410104766
48888 0.587120389597683 -0.687138419893731 0.475765501744996 -0.118987324324101 0.0910519936330435 -1.70052570136813 -0.0282448033534568 0.0627821547940813 -0.258939289319008 -0.0239143619631182 -0.0038523945855652 -0.0869767732083764 -0.165479161632043 0 0.062324449626711 1.0817635123915 0.988052795890111 0.936102104868219 0.640191339992751 0.319772584196208 0.123399050388376 -0.44081681391543 -0.337325949785327 -0.125527290127924 0.14347514101774 0.267079089586741 -0.122302166231768 1.06643927930953 1.18058019860381 -0.0645244350457254 1.53167754658461 1.57880631679899 0.253494625801309 0.557050505954576
49109 0.0469003673655587 -0.325527504337598 -0.0750393511239219 -0.169335986904837 -0.145337344080947 -0.453419729031855 0.408783689142808 0.353556141455754 -0.112620708243517 -0.0995603589240817 0.10960886743917 0.0322262045391117 0.0899062982659651 0.020454274163405 -0.378453532587736 0.199579638406583 -0.924038587033142 0.853044775650236 -0.039067980406241 0.381311064621004 -0.171323568788875 0.145499086746767 -0.179055042410848 -0.520006350078912 -0.191802320622954 -0.305940824732765 -0.108341635113644 1.20070137226335 0.435868214935253 0.0248983908617835 1.73566820306418 1.57105333877171 0.831252169075251 0.776028453466372
52110 0.689093089085648 -1.40063186436296 0.785922217867413 -0.486482560129446 0.250454242900368 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.328878771708504 -0.107511677609655 0.0817359245411393 -0.371436508302961 0.585967480847459 0.221396019044642 0.748056498042381 -0.554069155375698 0.715097877377065 0.918771169990036 0.415068667215735 -0.138533202294626 0.854144978454568 0.699225244005085 0.16436369745588 0.490207458206691
55087 -0.154149531538656 -0.281384351246171 0.207669644403262 -0.714219182166866 -0.173092538228697 0.306586032327474 -0.11981508717934 0.0437334651056524 -0.0603604274149388 -0.19653301457044 -0.251799842694867 -0.319381437237996 -0.514693833840872 -0.165320768162695 -0.136999760948621 0.0232414295975992 -1.08669145513632 0.292507196848633 0.718060542158492 0.195845380493397 1.15960413234665 0.456440977558649 0.529155935411432 1.55950578350017 0.775011427310231 0.566677422861569 -0.30078639464846 -0.693155998465888 -0.149705858947491 0.0599810489392762 -0.4527894253073 0.0856005370815751 0.396273028154225 0.764749284974868
[+] Show/hide bicluster #13 motif PSSM #1. bicluster 13 motif PSSM #1 Phaeodactylum tricornutum 14x4
POSITION A C G T
1 0 0.4375 0.125 0.4375
2 0 0 0 1
3 0 0 0.75 0.25
4 1 0 0 0
5 0 1 0 0
6 0.5 0 0 0.5
7 0.0625 0 0.9375 0
8 0 0 0 1
9 0.125 0.125 0.6875 0.0625
10 1 0 0 0
11 0.5625 0 0.4375 0
12 0.0625 0.5 0.0625 0.375
13 0.5 0 0.125 0.375
14 0.5625 0.375 0 0.0625 [+] Show/hide bicluster #13 motif PSSM #2. bicluster 13 motif PSSM #2 Phaeodactylum tricornutum 20x4
POSITION A C G T
1 0 0.5 0.5 0
2 0.125 0.5 0 0.375
3 0.625 0.375 0 0
4 0 0.25 0.75 0
5 1 0 0 0
6 0.625 0.375 0 0
7 0 0.625 0.25 0.125
8 0.5 0 0.5 0
9 0.875 0.125 0 0
10 0.875 0.125 0 0
11 0 0.125 0.875 0
12 0.25 0 0.75 0
13 0.375 0.625 0 0
14 1 0 0 0
15 0.25 0.125 0.625 0
16 0.125 0.625 0.25 0
17 0.375 0.375 0.25 0
18 1 0 0 0
19 0.625 0.375 0 0
20 0 0 0.875 0.125 |