[+] Show/hide bicluster #16 rows and columns.
bicluster 16
Phaeodactylum tricornutum
36x47
[+] Show/hide bicluster #16 rows (genes).
bicluster 16 genes
Phaeodactylum tricornutum
36
[+] Show/hide bicluster #16 rows (short gene names).
bicluster 16 short names
Phaeodactylum tricornutum
36
short_name
[+] Show/hide bicluster #16 rows (long gene names).
bicluster 16 long names
Phaeodactylum tricornutum
36
long_name
[+] Show/hide bicluster #16 rows (NCBI RefSeq gene IDs).
bicluster 16 NCBI RefSeq IDs
Phaeodactylum tricornutum
0
[+] Show/hide bicluster #16 gene upstream sequences.
bicluster 16 upstream sequences
Phaeodactylum tricornutum
34
upstream
[+] Show/hide bicluster #16 columns (arrays; conditions).
bicluster 16 arrays
Phaeodactylum tricornutum
47
[+] Show/hide bicluster #16 ratios.
bicluster 16 ratios
Phaeodactylum tricornutum
36x47
GENES GSE17237_highlight_12hr_2 GSE17237_highlight_24hr_1 GSE17237_highlight_24hr_3.1 GSE17237_highlight_30min_3 GSE17237_highlight_48hr_1 GSE17237_highlight_48hr_2 GSE17237_highlight_6hr_2 GSE31131_Cadmium_0.12mg_2 GSE31131_Cadmium_0.12mg_3 GSE34988_Cadmium_1 GSE34988_Cadmium_2 GSE34988_Cadmium_3 GSE34988_Cadmium_4 GSE34988_Cadmium_5 GSE34988_Control_5 GSE34988_Copper_2 GSE34988_Dispersant_1 GSE34988_Dispersant_2 GSE34988_Dispersant_3 GSE34988_Dispersant_4 GSE34988_Dispersed_oil_1 GSE34988_Dispersed_oil_2 GSE34988_Dispersed_oil_3 GSE34988_Dispersed_oil_4 GSE34988_Dispersed_oil_5 GSE34988_Oil_1 GSE34988_Oil_2 GSE34988_Oil_3 GSE34988_Oil_4 GSE34988_Oil_5 GSE34988_Salinity_15ppt_1 GSE34988_Salinity_15ppt_2 GSE34988_Salinity_15ppt_3 GSE34988_Simazine_3 GSE34988_Simazine_5 GSE42039_light_6h_1 GSE42514_dark_8hr_light_3hr_2 GSE42514_light_0.5hr_1 GSE42514_light_0.5hr_2 GSE55959_BlueLight_24h_rep1 GSE55959_BlueLight_24h_rep2 GSE55959_BlueLight_24h_rep3 GSE55959_GreenLight_24h_rep1 GSE55959_GreenLight_24h_rep3 GSE55959_GreenLight_6h_rep1 GSE55959_GreenLight_6h_rep2
10479 -0.86224269070246 -1.14806970577455 -0.797812254537023 -0.961865887518385 -0.905245632287994 -1.45191561915689 -1.09897510758357 -1.10772990785211 -0.76277029155122 0.208686379742149 0.0933684891883983 0.949302151198278 0.956953852323458 0.705714557837799 -0.888258639789036 0.498975711105158 0.608413929581907 0.31007264310354 0.4126091369916 0.658174882736443 0.46246839315208 1.22710801086671 0.813623659542263 0.825795591797319 0.580728474179568 1.02656504184248 0.988990104875826 0.00212409431293697 1.14755000821841 1.10420506891033 0.536812495412957 0.0413873107190879 0.761158449021707 0.0134627129824714 -0.547687150173277 0.0760428509185926 -2.84745070956479 -0.976441327673012 -1.04298026192958 0 -0.843162730295131 -0.811427239654477 -0.782226635608381 -0.652961115866578 0.264706253164894 0.468679740235877
15495 -2.11447256923577 -1.14176860437311 -1.13362072642815 -1.67668389200688 -1.66517656765433 -0.663355921311889 -0.939207743305731 -0.414171092003916 -0.557890605755273 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.874245836023702 -0.771831143131018 -0.605745917329133 -0.0437998430973555 0 -0.839586028356321 -0.967822802491782 -0.581430686823686 -0.57174921996076 1.14112230055102 0.951853262188757
16955 -0.72530845682522 0.196403167063345 -0.635610482574215 -0.905427478954126 -0.09595346199188 0.566547780566069 -1.14655180848336 0.158319754192039 -0.483152480847421 0.338018799806563 0.3910292525202 1.1509830977714 1.14264304681411 0.542015371098764 -0.0589193299685798 0.533612371285859 1.23592112899776 0.817401876631568 0.871411884220315 1.00132822682341 -0.246276696758994 1.48033548958501 1.25965857688889 1.0967429961801 -0.0224306656530758 1.81451948700694 0.786093930767009 0.207179962633611 1.47665306443138 2.02060560291393 -0.0675281616702311 0.369363037519401 0.189556862176023 0.923384095317022 0.693420448668992 0.424207388258264 -2.25986115563124 -0.849137595224681 -1.67063638593751 -0.303123082826757 -0.393325883147013 -0.405990570277615 -0.565115156172613 -0.600976938096522 0.221130786580164 -0.352429417918497
29425-29916_PsbV -1.70184588124507 -0.0230523782743909 -0.997289264854448 -0.827558817718227 -0.371969331426258 -0.485992580904169 -0.685909748477205 0.936518118563284 -0.352462405984822 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.496613282324837 -0.243465106377399 -0.602561489351756 -0.672030507404459 -0.131646919985017 0.095831026822479 0.232525644821525 0.781599984739821 0.691802956392777 0.701591041208733 0.73003939522544
34672 -1.25860207292094 -1.06161901415449 -0.934792642779388 -1.357298738817 -1.20155100837809 -0.410602399799562 -0.713222094938719 0.111773396277959 0.316482300612497 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.855370363257407 -1.1391360922513 -0.51798727697857 -0.192124531386551 -0.606844971297949 -0.436243047365926 -0.537466492312643 -0.180530077684054 -0.161051810232955 0.290780536240188 0.61337117474724
35830 -2.46330092134265 -2.06747706464433 -1.05634636853298 -0.533643270407737 -1.01357599649753 -1.06754665749189 -0.763824009140963 0.0680882956021112 0.692798696611855 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 1.30541935095407 -0.861432482392209 0.397437737980684 -0.430614123365126 0.109771910723257 -0.114565496746937 -0.120765061325605 -0.318168737762115 -0.313121858914598 -0.129936676397083 0.241762619426136
36098 -0.73897386717516 -0.434060008143439 -0.351148648755983 -1.64184132846146 -0.503012860344612 -0.421800625681884 -0.545411949405849 -0.0567012004559454 0.22032528009957 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.32240133541211 -0.769215697586378 -0.16043985796141 -0.884869773270824 -0.205399556252719 -0.331709479851118 -0.291586516959549 0.0474880170420386 -0.0177177461789021 0.362642531516842 0.673860169032584
36770 -2.36782831100365 -1.97387603255421 -1.6688710546095 -0.917638714778451 -0.92431834937391 -0.9408968516494 -1.18333323923413 -0.11911178492059 0.567220669762785 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.823302702242088 0.228876432427442 -0.352172120300844 -1.41948463868062 -0.0527774472027607 -0.35828005202925 -0.428034382653858 -0.230721778202306 -0.352632625621458 0.601377615757147 -0.0849587241153956
37267 -0.414387986334781 -1.46188605487497 -0.966870362516707 -1.30116898992996 -0.76750134329998 -0.74691697802875 -0.222154510154634 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 1.01216210669339 -1.92822610867839 -0.667897554265005 -1.25220938631358 0.384114000371384 -0.0647062562890291 -0.104776611964511 -0.196708659312648 -0.0858409035612608 1.47068249906692 1.45662184429889
37524 -1.4306383784083 -0.926918989216497 -0.85371785331411 -2.2753875760728 -0.725172074703982 -1.2010206538382 -1.15751043195577 -0.49285040967949 0.150384067805141 -0.612805580964167 0.294864455259197 0.517650560046648 -0.230643070772568 -1.00791275667278 0.136432719389685 1.08781711376457 0.886924636945507 1.04536506137714 1.2422181058221 1.03846654902881 0.906596927272165 1.2507935668366 1.19400190402807 1.23304616752759 0.0949009580044968 1.11919321560443 1.27414595008224 0.945807565501171 0.952136171840302 0.895607094606512 1.66239453588745 1.20798816710585 1.0409112931967 1.97056809727641 1.20386660534925 0.291073618632338 -1.30192679395449 -1.48926407866463 -1.7243583782964 -0.451657467407794 -0.792876533485691 -0.58607059669681 -0.36466078406529 -0.222279536608375 -0.120825535824808 0.00306978054077919
38668 -1.86094185786042 -0.863561496694925 -0.589651159884137 -0.795515009054286 -0.233675713896162 -0.427283066870971 -1.76492779931833 -0.230383703785903 -0.150841307823722 0.467699113217556 0.696643582019565 0.43472177932896 0.0201270928979943 0.434077964917847 -0.00876650390032809 0.448012181521452 0.93640866161944 0.776311779796674 1.17236435717444 0.851401354693799 -0.266153283975363 0.874307968076973 0.84675966398344 0.823810071579382 -0.380764877234695 1.32703202050668 0.80781778257047 0.218106955245002 1.26236483640136 0.666670091236295 1.04873878155809 0.660910118625916 0.809884433361911 0.510887992488512 -0.222970138143532 -0.176948799271284 -0.568836386164338 -0.430774390564256 -0.386192111989822 -0.191971927937151 -0.277394951826187 -0.304648952558008 -0.232833690468563 -0.311426499534651 -0.884371289709311 -0.305929509868465
40880 -1.85569770911911 -0.817785085376483 -1.19708623939498 -1.13703993021507 -0.585292579460109 -0.0506070604931304 -0.782524292173106 0.377250180266573 0.10511290431674 0.500733049604784 0.0937530119212885 0.493424629516553 0.437082756321173 0.303520503553774 0.131896909322219 0.930961889870393 0.793792696136442 0.661309470234056 0.557454639381194 0.489613485809099 1.07166710059048 1.33517090719354 1.33947456813446 0.633749928160544 1.2232363793477 1.02727685076945 0.858622117903915 1.38141868595609 1.37156296517239 1.491551726779 1.23232127938181 1.64833241522843 1.2804985944348 0.996227835826503 1.19712385916197 0.513841685557427 -1.18156937920853 -1.5934382445689 -2.57702110489873 -0.774439498505719 -0.284098465879567 -0.275129718222244 -0.475481155580334 -0.535545613566471 -0.189275844903782 -0.323541947100818
42577 -1.82841216084593 -0.658850857384776 -0.111988784944621 -0.716823844066291 -1.21586747279325 -0.216997842847387 -1.47159529395479 0.309834271342048 0.141546763296789 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.12306663679946 -0.364595498854067 -0.373440855605544 -0.0903358657358183 0.277167510187348 -0.135203067956011 -0.0729296976557388 0.175371149713222 0.139921985031164 -0.289152486036866 -0.352748551572578
42614 -0.683693172714747 -1.04918633937447 -0.790593267403265 -1.13184407541694 -0.938223771532548 -1.48390159806601 0.582251571643093 -0.360762931660934 0.352373024805383 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -0.23253144968973 -1.6090485126592 -0.92502123772805 -0.98639729058091 -0.0932653444349769 -0.43248255593249 -0.28046997204658 -0.207480929229805 -0.0628641449897892 0.427442766808057 0.167603971292227
42790 -2.21202775063936 -0.756327554807792 -0.955679548155581 -1.07993011370365 -1.08955995863295 -0.590810689174752 -1.92569468008347 0.697688128326695 0.524098100661472 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 1.39305165883607 -0.537681313447204 -1.0417530935816 -1.64783355297707 -0.36993389286677 -0.272054682350292 -0.409288991734007 -0.162068958487287 -0.254642004728585 1.3524304256934 0.673423481095021
43877 -1.65929406959211 -1.15998175595868 -0.96977576152626 -1.52170837390927 -0.804174538777528 -0.937814895377452 -1.14855781364588 -0.742496944306893 -0.437008114028592 -0.173569969443541 0.0381281969965671 1.11572443811704 -0.814944045301664 -0.19557652512722 -0.276818769328183 0.274176428261288 0.939146012403327 2.00418347632737 1.59921738985881 2.53081802878982 1.36922249763917 1.77584997001512 0.36304938146072 0.718411112224603 0.614807398879905 0.346903283124894 1.27923284920616 1.22628205522077 0.880147740303543 1.12034274011905 1.71102543165001 1.26945428313264 0.8407092454264 1.26884883924867 -1.12168600102884 0.388398184191179 -0.883979693902301 -0.617966878850823 -1.54537952921856 -0.353095503111607 -0.829395635514517 -0.812875624658885 -0.681534196150342 -0.65825706030553 0.0678640921466266 0.0374325892716453
44074 -1.69857028761598 -1.76666047392817 -1.50098442098794 -1.13504487130467 -1.37816998903817 -1.217771813058 -1.26231920873592 -0.619882738913337 -0.711891105587581 0.637339184235026 0.573610234452927 0.327410106598365 0.470639368446076 1.81187139321303 -0.321324748507375 0.378093230157212 0.624401842199162 0.376365628082926 0.409758042484332 0.779873716790651 0.0501261250697093 1.33832982200277 1.03583866132935 0.0756575169573486 0.847166286029861 1.05885061989305 -0.0908911097577501 0.979690104409935 0.923819077593393 1.18638893551362 -0.00945929700470033 0.829180813140909 0.530090252908413 0.113045472859078 0.927471447447614 -0.79910999732269 -1.07317020250944 -0.55640874418968 -0.212725838429044 0.263712934212081 -0.224224856336104 -0.145641419398097 0.0259088421477565 0 -0.843778579545129 -1.1139069087948
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45345 -0.34789312161569 -0.945616581817727 -0.223601880474835 -0.591714163047793 -1.01328390622116 -0.510597237824733 -1.24250711459582 0.0547366679559018 0.0532749252094792 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.925720567549507 -0.646368481381924 -0.707159698777923 -1.19627196539751 0.713961544036343 0.0511916046828671 0.122607638497073 -0.209681950630981 0 0.159465289176639 -0.0539139967133583
47807 -1.20017296247506 -1.591604915903 -1.75300930238047 -1.27152826911118 -1.77620989357406 -0.932704952189381 -0.964585928733796 -0.444395587146943 -0.293007894581685 1.05226793136302 0.76665659327101 -0.0462750364459042 -0.176350002613289 1.13059788266613 -0.103272464677059 0.296224167121881 0.826704917758046 1.0432785486263 0.728447359255763 0.805665033698013 1.61485124376136 1.0816229475085 1.02261362441733 0.920255377290651 1.20698976999194 1.41683451530557 0.361356124113169 0.928067591864076 1.07725602866186 1.29136076168875 1.07142756778449 0.696404980969717 1.45332334296461 -0.0115711229428006 0.239043622961486 0.665435196290751 -1.03253696059119 -1.22551048466172 -1.20590048989662 -0.393109653157181 -1.04532228595086 -0.8421674291068 -1.18476164035295 -0.972669795628093 0.830578758670004 0.740262562337226
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54048 -1.66659142510409 -1.32301949375315 -1.33767209432897 -1.51151898092188 -1.12121703563595 -1.08731215080839 -1.08852681747301 -0.516418818440459 -0.0974755438736291 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.885426801328698 -0.43093146457659 0 -1.12510906741764 -0.58253781755344 -1.02591904435543 -0.997997945606341 -0.698238762382845 -0.624373111771637 0.549896191092724 0.373975220633928
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c5533-4976_photosystem -2.53250058073028 -0.571944282537283 -1.73266956069382 -1.04106213580039 -0.691908535353869 -0.84331217397475 -0.920851359988039 0.515739998296143 -0.585905359138009 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.699675848106048 0.0590538649959131 -0.451199917617848 -0.0350593550259402 -0.288329596697851 -0.536674890009682 -0.462895308507261 -0.0118168570405003 -0.162667877848276 0.6191629898034 0.132089732520242
[+] Show/hide bicluster #16 motif PSSM #1. bicluster 16 motif PSSM #1 Phaeodactylum tricornutum 15x4
POSITION A C G T
1 0 0.272727 0 0.727273
2 0 0.545455 0.454545 0
3 0 0.181818 0 0.818182
4 0 1 0 0
5 0.818182 0 0 0.181818
6 0 0.909091 0.090909 0
7 0.363636 0.181818 0 0.454545
8 0.181818 0.090909 0.727273 0
9 0 0 0 1
10 0 1 0 0
11 0.727273 0.272727 0 0
12 0.909091 0 0.090909 0
13 0.090909 0 0 0.909091
14 0 0.454545 0 0.545455
15 0.363636 0.636364 0 0 [+] Show/hide bicluster #16 motif PSSM #2. bicluster 16 motif PSSM #2 Phaeodactylum tricornutum 15x4
POSITION A C G T
1 1 0 0 0
2 0.555556 0.111111 0.333333 0
3 0.222222 0.666667 0.111111 0
4 0 0.888889 0.111111 0
5 0.777778 0 0.222222 0
6 0.222222 0 0.777778 0
7 0 1 0 0
8 0.888889 0 0.111111 0
9 1 0 0 0
10 0 0.888889 0 0.111111
11 0 0 1 0
12 0.777778 0.222222 0 0
13 0.222222 0.444444 0.333333 0
14 0.222222 0.444444 0.333333 0
15 0.666667 0.333333 0 0 |