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[+] Show/hide bicluster #17 rows and columns.
bicluster 17
Phaeodactylum tricornutum
38x54
[+] Show/hide bicluster #17 rows (genes).
bicluster 17 genes
Phaeodactylum tricornutum
38
[+] Show/hide bicluster #17 rows (short gene names).
bicluster 17 short names
Phaeodactylum tricornutum
38
short_name
[+] Show/hide bicluster #17 rows (long gene names).
bicluster 17 long names
Phaeodactylum tricornutum
38
long_name
[+] Show/hide bicluster #17 rows (NCBI RefSeq gene IDs).
bicluster 17 NCBI RefSeq IDs
Phaeodactylum tricornutum
0
[+] Show/hide bicluster #17 gene upstream sequences.
bicluster 17 upstream sequences
Phaeodactylum tricornutum
38
upstream
[+] Show/hide bicluster #17 columns (arrays; conditions).
bicluster 17 arrays
Phaeodactylum tricornutum
54
[+] Show/hide bicluster #17 ratios.
bicluster 17 ratios
Phaeodactylum tricornutum
38x54
GENES GSE17237_highlight_12hr_1 GSE17237_highlight_12hr_3 GSE17237_highlight_24hr_1 GSE17237_highlight_24hr_3.1 GSE17237_highlight_30min_1 GSE17237_highlight_3hr_2 GSE17237_highlight_48hr_1 GSE17237_highlight_6hr_1 GSE31131_Cadmium_0.12mg_1 GSE31131_Cadmium_0.12mg_2 GSE31131_Cadmium_1.2mg_1 GSE31131_Cadmium_1.2mg_3 GSE34988_Cadmium_1 GSE34988_Cadmium_2 GSE34988_Cadmium_5 GSE34988_Control_1 GSE34988_Control_3 GSE34988_Control_6 GSE34988_Copper_1 GSE34988_Copper_2 GSE34988_Copper_3 GSE34988_Copper_4 GSE34988_Dispersed_oil_2 GSE34988_Dispersed_oil_3 GSE34988_Oil_2 GSE34988_Oil_3 GSE34988_Oil_4 GSE42039_light_24h_1 GSE42039_light_6h_1 GSE42039_light_6h_3 GSE42514_light_0.5hr_1 GSE42514_light_15.5hr_1 GSE42514_light_16hr_dark_30min_2 GSE42514_light_16hr_dark_4hr_1 GSE55959_BlueLight_0.5h_rep3 GSE55959_BlueLight_24h_rep1 GSE55959_BlueLight_6h_rep1 GSE55959_BlueLight_6h_rep2 GSE55959_BlueLight_6h_rep3 GSE55959_GreenLight_0.5h_rep1 GSE55959_GreenLight_24h_rep2 GSE55959_GreenLight_6h_rep1 GSE55959_GreenLight_6h_rep2 GSE55959_GreenLight_6h_rep3 GSE55959_RedLight_6h_rep1 GSE55959_RedLight_6h_rep2 GSE55959_RedLight_6h_rep3
1143 2.39412234920365 1.61029651063103 1.43220430069861 1.0989190573601 1.92396823371378 1.37881841134384 0.342904812940857 2.13079889010328 -0.951671874528349 0.615309014600765 -0.369223025106393 -0.218448355878342 0.87781680099649 0.045057744840805 0.58297601047708 0.250538671307811 0.438342340265315 0.526488784946811 -0.460483551437779 -1.10830145620259 -1.61280241851025 -1.12736861560253 -1.26912785874786 -1.08610674968584 0.434271435242069 -0.663404216614877 -1.53043196675942 -0.0901097575676025 -0.245902386671094 -0.0398712975653945 0.406784196339703 0.33091439156731 0.150204914634646 0.541542460866598 -0.79498306248902 -0.05822872267179 -0.658346752938642 -0.342969996450894 -0.361139997867507 -0.370800048048818 -0.0525878933383015 -0.91482137037752 -0.445288283179443 -0.148125994317654 -0.188640093909214 -0.358055571476429 0.0213669045990171
14242 1.08961755635483 0.828614406778931 0.962075494018978 0.953908613885826 2.35417518210034 1.73766407570261 0.550250092945617 0.991791682067573 -0.0276090282706495 0.534839033078971 0.248075528018974 0.262056729464871 1.05510824598801 0.564545416945021 0.762187168522621 0.0447194653815918 0.140089688383505 0.0751252679297372 -0.152011849204498 -0.404732637129849 -0.118978605570926 -0.054591413399236 -0.543840585376065 -0.463754555516628 0.0271545871990608 0.147569994347643 -0.564961328403751 -0.223920614319215 -0.879788691980735 -0.911517611963064 0.377141652347119 -1.00554608077739 -0.459702063836171 -0.105637171367646 2.81602922734994 -0.101780952338047 -0.662666058153923 -0.0358764173935982 -0.502172492452454 2.0419065504403 -0.315402636250815 -0.719375434545414 -0.589632162335827 -1.14337654671984 -0.568088577202934 -0.0891266965315369 -0.407740482435272
14760 0.712007931633062 0.968483792555319 0.896394496753538 0.438919160872229 0.226621291517925 0.696312511431281 0.381100002628905 0.743300675660362 -1.08177663430286 -0.027661826876142 -0.93804813195508 -0.717700589372289 1.18720008376516 0.667713527556634 1.6719799112375 0.0893519498737098 0.11487623459135 0.180621395384571 -0.232609855052686 0.34300448167967 -0.578275801057446 -1.05172257149146 0.911459479435235 0.914396946570499 -0.525382436940573 0.712326836220183 0.1445937816309 0.242238700744043 -0.639950514917449 -1.17090771774899 -0.36960598682554 0.212377966657405 0.232531319108645 0.545594210836039 -0.852058475487122 0.12054549019372 -0.93402920052694 -0.341526702330422 -0.664621577933714 0.186974813232223 0.440879743737342 -0.0991195170672315 -0.0222156757301798 -0.65497844718583 0.292682216735682 0.178253672186607 -0.190698008410942
14898 1.49180050547187 1.25990264199367 1.32114417000854 0.721686335335924 2.04327407777268 1.45519637378482 1.15005765778394 1.28654101204441 -0.0172595730964123 0.439327434193701 0.948480738146219 0.360357409350341 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0 -0.385640375679437 -0.813215138856466 0.428235660973278 -0.648562775891774 -0.592786413037577 -0.170023687780489 1.80073326056499 -0.405244609991956 -0.338806745854331 -0.42736277250434 -0.601179276636737 1.64906672160298 -0.116052779768237 -0.69947442957625 -0.652285087614902 -1.26418093564916 -0.453145744131695 -0.370306420083445 -0.803448186655517
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15422 -0.228115638635457 1.14248194098475 NA NA -0.0818375542016438 1.27783325992155 0.828201602987701 NA -0.160752603673189 0.106319277867143 NA NA 1.22749912960803 1.09288206861473 1.70283843868873 0.705794234235632 0.252272804019081 0.153345819058029 0.40179954433461 0.194912977081789 -0.0812382962877495 -2.41003197074531 0.456144342917665 0.719843156959028 -1.03898372888532 0.194738511047057 0.213309769322826 0.254057044598431 -0.564980773421346 -0.725048235526669 1.19779084965513 -0.144009466183724 0.528157325684777 -0.172060003020804 -0.477751046642418 0.515377543525899 -0.242326772820306 0.132933787996992 -0.434627911737362 0.401210903525369 0.710127707716522 0.053607532874189 0.590622708542772 -0.81423730199132 -0.0605785135335995 0.0494705472597197 -0.925050631821065
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1875 0.375489392080465 0.875009768828045 0.373289445755005 0.298307941828936 0.429954986299623 1.12934048671518 0.224781787010478 0.0143597414243066 -0.438879969612426 -0.492183540900701 -1.08209350718459 -0.613259561233157 0.57831839296534 0.967677768972011 2.0183891976976 -0.525273455834149 -0.537928782452666 -0.366208249032855 -0.162457137355145 -0.530728300310336 -0.927145308611271 -0.13153058805846 1.07759681792378 1.60627621401552 1.08620481303314 0.541991539528453 1.31106090389173 -0.549911160317272 -0.525118527045965 -0.982576871588701 0.386717072679943 -0.110371169791519 -0.45557490436633 -0.206364097889344 2.17518153799293 -0.320177010934524 -0.76340332972305 -0.944368794857162 -0.673642975719713 1.53314406174911 -0.362388489623953 -0.850067013125137 -0.618078325528773 -1.00585095141462 -0.573431888072922 -0.789543136295909 -1.34235937129668
25856 0.715129073699699 0.061140942879644 0.278239603658534 -0.269514036566503 1.70660113131833 0.121116028537293 0.524442021147965 0.784983018612196 -0.494084089222264 0.348402023918086 -0.598445633081997 -0.471659716059516 0.369775041148817 0.641772184154842 0.804800912192487 0.00546205314929352 -0.094370960442825 0.22133733299395 -0.113690098391735 0.651203847633839 0.657865402496285 0.661643809098476 0.423368511196986 -0.959124261985607 0 -1.02743698588314 -0.0958623767108469 -0.318611039168813 -0.421215820465409 -0.414840171574805 0.982505365407111 -0.768436559736172 -0.387401626042459 -1.14332221078512 1.54883002242384 -0.467963510788426 -0.410726060911751 -0.993891078217666 -0.383124441787204 0.235357314145371 -0.423685522571334 -1.04308451929999 -0.625248380441846 -0.301893011893058 -0.621227704014536 -0.655170625228963 -0.302095710825377
28652 -0.714940602648505 0.193929568748774 -0.49223946941511 0.07803111927841 0.61595421362636 0.564436020469719 -0.171282384978746 0.408489624486333 0.379890942458433 0.608641931391054 0.781006866396327 0.613191562757928 0.131933319562713 -0.233478471739334 0.0756414580418732 0.350299084237725 0.152990769035867 0.245996319748512 -0.163449556081931 -0.229154835704577 -0.411702062524552 0.0660365952289376 -0.254322480205204 -0.272540169377459 0.439394366671599 0.0602186448364717 -0.398467181381289 1.12818646016776 -0.254194441769732 -1.0426484365868 -0.616409813516765 -1.11792247973895 -0.805887762761895 0.0255662806184489 -0.0575523143013114 0.659500636826148 -0.37850437358687 -1.05595812378796 -0.85099713410801 -0.764678051516677 0.701761916486466 -0.818875774662833 -0.976245937508137 -0.79930108758572 0.526199652940292 0.60753672261693 0.56454777506703
35370 0.218131179093955 1.29259595920658 0.61780263595878 0.958379174230913 -0.639724063874815 1.28855465164615 0.49662296753697 0.634966281412384 0.38470733614075 -0.474647695405512 0.333850967365791 0.574279529455858 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 1.39530510241352 -1.80229866002821 -1.02591740826771 0.00636930343919869 -0.976432295805691 -0.715605028621306 0.47410066007243 1.64112657468432 0.277282156890964 -1.14345758160699 -1.17558387691629 -1.02929163212088 -0.0478200824234217 0.970211938903028 -1.33546524250333 -1.38210156894514 -1.09087351902264 -1.20815672960708 -1.18639126606917 -0.853698431067083
37164 1.29073474421514 0.673920769995553 1.61672272182709 1.30030756509536 1.27013113196403 0.827135688437262 1.34948028691247 0.729558346329837 -0.954852741671655 0.491894932247926 -0.30084273981199 0.120204913791785 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0 -1.12248382649394 -0.256386754963964 0.224877335339372 -1.35251490725383 -0.890416171258264 -0.570332287376368 2.4670565279588 -0.153510213953364 -0.308279704935326 -0.178895014577797 -0.341313530532737 0.103236410293852 -0.576038372263385 -0.833121017419191 -1.08513039922064 -0.499974590256484 0.16011821342276 -0.254578998988718 0.244479648125638
37765 0.32225942808868 1.61505694758806 0.566690033635763 0.885910196322028 0.155881308479366 1.08393586077509 0.950368664653396 0.681731059601559 0.864801416720001 1.09708653151161 1.50959052135107 1.12280455610446 0.382771833678253 -0.899129847317744 -0.13354916277618 1.04974734376565 0.96963970746248 -0.713066371498733 -0.240360772424849 0.606479508114999 -0.88751507075952 1.91833456299082 -0.580178856726659 1.21625449619377 0.621680511644469 1.12706248070954 -0.480285007683577 -0.0571899414282244 -1.12981184079246 -0.856070046572487 0.464254647956748 0.169685021373025 0.448659739971331 0.802050277250181 1.79899911878851 -0.688382267935817 -0.817887263976169 -0.307139615519563 -0.881717398930355 -0.079199613616125 -0.622969802807018 -1.49892086675287 -1.85312310929665 -0.821456438874315 -0.155821781967787 -0.0283953514235064 0.26785009626931
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42825 -0.334137086527962 0.765865798899686 0 -0.349720375490435 -0.296218886689295 0.482388609458336 -1.57344616416865 0.430688689804207 0.431569583235711 0.0495687258682329 -0.0337012777343064 -0.227520565398857 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -0.035549622465884 -1.43124252406573 -1.2839802913237 0.329154908040382 -0.154961669890654 -0.314876946494948 0.657933905635708 1.82141271937222 -0.137314093452366 -1.16749440204366 -1.35595887262722 -1.04999147043923 0.163326099483146 0.272016532012463 -1.49864187840599 -1.24422512946872 -1.17689167767482 -1.16749440204366 -1.2839802913237 -1.11221433228733
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54998 -1.10277814998071 0.0512630331357339 -0.244615382628781 0.111406510602435 0.891793430851902 0.36793072075875 -0.436143327984753 0.435324020726032 0.073520229988397 1.06586515757141 -0.335775251736842 -0.256158453994641 -0.140507154844211 0.144087552904237 -0.443663715426841 0.474917269687639 0.438474377269743 0.619934802556104 -0.543667608118553 -0.526818454180854 -0.805607736175683 -0.29588214541925 -0.171450322932919 -0.158224574327163 0.466032765913559 -0.643670050154977 0.0697198477046914 0.66827694646884 -0.525050257454862 -0.624259226898695 -0.0397403257993244 -1.35957344629479 -0.6982996520458 0.317457068537183 1.10737476286546 0.21732870096156 -0.8875060225516 -0.650390780476896 -0.608979705245436 1.4477491158509 0.305248648058338 -1.50439353094465 -1.23200403872737 -1.16666118143087 -0.37865976304749 -0.354164546107238 -0.477454725188127
[+] Show/hide bicluster #17 motif PSSM #1. bicluster 17 motif PSSM #1 Phaeodactylum tricornutum 24x4
POSITION A C G T
1 0 0.2 0 0.8
2 0 1 0 0
3 0 1 0 0
4 0 0 1 0
5 0.6 0 0.2 0.2
6 0 0 1 0
7 0 0.8 0 0.2
8 0 0.2 0.8 0
9 0.2 0.2 0.6 0
10 0.2 0.2 0 0.6
11 0 0.8 0.2 0
12 0.2 0.4 0 0.4
13 0.2 0 0.4 0.4
14 0 1 0 0
15 0 1 0 0
16 0 0.8 0 0.2
17 0 0.4 0.4 0.2
18 0 0.4 0.2 0.4
19 0 0 0 1
20 0 0.2 0.8 0
21 0 0.6 0.2 0.2
22 0 0.4 0.4 0.2
23 0.2 0 0 0.8
24 0 1 0 0 [+] Show/hide bicluster #17 motif PSSM #2. bicluster 17 motif PSSM #2 Phaeodactylum tricornutum 21x4
POSITION A C G T
1 0 0 1 0
2 0.6 0 0.2 0.2
3 1 0 0 0
4 1 0 0 0
5 0.8 0 0 0.2
6 0.8 0.2 0 0
7 0.2 0 0.8 0
8 0.8 0 0.2 0
9 0.2 0 0.6 0.2
10 0 0.4 0.6 0
11 0 1 0 0
12 0.2 0 0.2 0.6
13 0.8 0.2 0 0
14 0 1 0 0
15 0 0.2 0 0.8
16 0 0 0 1
17 0.2 0.8 0 0
18 0 0.6 0.2 0.2
19 0.2 0.8 0 0
20 1 0 0 0
21 1 0 0 0 |