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[+] Show/hide bicluster #19 rows and columns.
bicluster 19
Phaeodactylum tricornutum
31x49
[+] Show/hide bicluster #19 rows (genes).
bicluster 19 genes
Phaeodactylum tricornutum
31
[+] Show/hide bicluster #19 rows (short gene names).
bicluster 19 short names
Phaeodactylum tricornutum
31
short_name
[+] Show/hide bicluster #19 rows (long gene names).
bicluster 19 long names
Phaeodactylum tricornutum
31
long_name
[+] Show/hide bicluster #19 rows (NCBI RefSeq gene IDs).
bicluster 19 NCBI RefSeq IDs
Phaeodactylum tricornutum
0
[+] Show/hide bicluster #19 gene upstream sequences.
bicluster 19 upstream sequences
Phaeodactylum tricornutum
29
upstream
[+] Show/hide bicluster #19 columns (arrays; conditions).
bicluster 19 arrays
Phaeodactylum tricornutum
49
[+] Show/hide bicluster #19 ratios.
bicluster 19 ratios
Phaeodactylum tricornutum
31x49
GENES GSE12015_Si_free_23v20_2 GSE17237_highlight_24hr_3.1 GSE17237_highlight_30min_2 GSE17237_highlight_30min_3 GSE17237_highlight_48hr_2 GSE17237_highlight_6hr_2 GSE31131_Cadmium_0.12mg_2 GSE31131_Cadmium_0.12mg_3 GSE34988_Ammonia_2 GSE34988_Ammonia_3 GSE34988_Cadmium_3 GSE34988_Cadmium_4 GSE34988_Control_2 GSE34988_Control_5 GSE34988_Copper_1 GSE34988_Dispersant_1 GSE34988_Dispersant_2 GSE34988_Dispersant_5 GSE34988_Mixture_1 GSE34988_Mixture_2 GSE42039_light_0.5h_2 GSE42039_light_0.5h_3 GSE42039_light_24h_1 GSE42039_light_24h_2 GSE42514_dark_8hr_light_3hr_2 GSE42514_light_10.5hr_1 GSE42514_light_10.5hr_2 GSE42514_light_15.5hr_1 GSE42514_light_15.5hr_2 GSE42514_light_6hr_2 GSE55959_BlueLight_0.5h_rep2 GSE55959_BlueLight_0.5h_rep3 GSE55959_BlueLight_24h_rep1 GSE55959_BlueLight_24h_rep2 GSE55959_BlueLight_24h_rep3 GSE55959_BlueLight_6h_rep1 GSE55959_GreenLight_0.5h_rep1 GSE55959_GreenLight_0.5h_rep2 GSE55959_GreenLight_0.5h_rep3 GSE55959_GreenLight_24h_rep2 GSE55959_GreenLight_6h_rep1 GSE55959_RedLight_0.5h_rep1 GSE55959_RedLight_0.5h_rep3 GSE55959_RedLight_24h_rep1
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44124 -0.275793781923312 0.501007083510585 -0.156507899041845 0.256300008775098 0.0918494081670417 -0.653153974872897 -0.191971090364269 -0.248791789677629 -0.812595466034325 -1.49558698192965 0.67257781520009 1.09175925885149 -0.972873050571467 -0.670062974838135 -0.521145041991696 -0.452824308485575 -0.320062689266855 -2.62669707649966 -0.599122453346123 -0.629037943531015 2.13473193369418 2.32581486671878 0.628223529083789 0.579695203160154 -0.341998199593117 -0.922458314507191 0.359212684872042 -1.17703819727723 0.373077673290899 0.324239142757644 1.51640935924766 1.54768307969641 0.0892720311533841 -0.475220836613078 -0.485156146996212 0.250443857665285 1.69729477961412 1.94212097903948 1.99780173933609 0.361835146282587 0.546543179019251 1.14134545279238 1.7674008230234 0.0367618235270058
45758 -0.818205138957082 1.0864648687939 0.799428982947996 0.741468986546829 -0.202766063197045 0.413966603073541 -0.569965606904993 -0.690128316889984 NA NA NA NA NA NA NA NA NA NA NA NA 0.80988034597241 0.813714576118846 0.453405224458589 0.423250605406602 0.168935412159876 -0.578587149373915 -0.0351586523225838 -1.13326334269542 -0.162201592321116 0.420121842537632 0.512482606593433 0.305092157956991 -0.204026956619224 -0.328357523798538 -0.303277933648215 -0.192956907124362 0.68580243019652 0.808142444916573 0.695562121826758 0.119733429070923 -0.201782557771053 0.743078152809256 0.599531305840167 0
46160 -0.169285650705315 -0.647229105223928 -0.283701857110495 -0.480963800183418 0.125644393754961 -1.90651737084137 -0.257325050601582 -0.433219057133178 NA NA NA NA NA NA NA NA NA NA NA NA 1.01022567410704 1.19890600114379 0.992530935473024 1.14465256751087 -0.578699979137272 -0.680801759013665 -0.0674305883024566 -0.234406694210583 0.530867211051405 0.130619676023896 0.507435620880682 0.802736473362529 0.879784041734138 -0.21695607982135 -0.379746011892586 0.0150473238259991 1.49620337816177 1.35287500244434 1.58707184339057 0.89078981229672 0.448280624566896 1.68942059551648 1.70900637467174 0.748921783152577
47020 0.100987264936675 0.000317594288039381 0.108529536227138 0.364218147567845 0.729177987584723 -1.56144536242429 -0.12508249145543 -0.497745554457803 NA NA NA NA NA NA NA NA NA NA NA NA 1.97744590563429 1.82432551528665 0.0989467429595703 0.0356482916477147 -1.02087087846186 -1.70156865721574 0.231569326581212 -1.80347251332807 0.678326958273881 -0.920490574768488 1.99219508053872 1.86456912491379 0.0800445538696417 0.0432559846871289 -0.121013596348337 -0.8484624617543 1.06781930756552 0.902158284638707 0.613391982081501 0.103382793891092 -0.738207997196124 1.8394930606852 1.64240559197017 0.254350646328243
48732 -0.22612147134038 0.22826372771011 0.37422163639873 -0.479399838223424 0.237119058160733 -0.413444502809504 0.127927098457996 -0.0656168918371478 -1.2961976775241 -0.545204049433192 -0.895255893297847 -1.41058033721667 -1.08760402980296 -0.748177100645015 0.643222047476459 -0.491486879490969 -0.959370379214962 -0.611338028172906 -1.01218678615117 -0.992978484981335 2.4430016686897 2.35661306303309 0.895542386958377 0.716225146369407 -0.277080590674295 0.166361861779071 -0.711707283407604 -0.0508425703376224 -0.992191539691027 -0.687738381581597 1.93284962991761 1.66171449979209 0.408296853962385 -0.123837156301052 -0.0506968122164656 0.941517696798794 1.85378045221406 2.03184408216576 1.74434274494314 0.651148709769714 1.03658124995454 1.19640378255741 1.36902124411393 0.602439410111079
48931 -0.0436067000100977 -0.412526057592149 0.198212772542972 -0.402837948608366 -0.662860322428145 -0.233727985291403 -0.138822842454479 -0.818575312753262 0.153620673679844 0.148659405320748 -1.47414989737831 -0.645337624162311 -1.16616651490303 -0.898299490126191 -0.226756702646958 -0.755869649093156 -1.13969125968376 -1.26782592522482 -0.0727549274826528 1.03372996823457 1.23412708529716 1.28639627890097 0.259453187946977 0.19903896607382 -0.420343796759746 -0.252941401082504 0.307210928091914 0.263646669173121 0.599034869969054 0.0155996983442093 1.4569913457978 1.39576012888685 0.244129870001951 0.0868437521851026 0.0522343350272664 0.135874083559418 1.02977905611128 0.75429638544253 0.837235390282528 0.348634001828782 0.362882684972896 1.31396400131625 1.3509741944972 0.553268206176252
49205 0.527989438651397 1.39414022445225 -0.60518813968693 -0.176611064197223 1.02843767408951 -1.72810899840905 0.500564063706535 0.13509314657813 -0.0888382845650137 -0.240651391980321 -0.798411434096288 -0.159891223276471 -0.140225580212376 -0.0646042114897661 -0.204951874067888 -0.254341972376867 0.0718234977739052 -0.621938207818229 0.035243493758065 0.123214362426143 2.75834562136779 2.25804537438007 0.412524525365559 0.162134504076743 -1.19024179611241 -1.47179789453609 -0.544392748243575 -1.02477149644807 -0.537555250977087 -1.22586682032728 0.994106431878843 1.93252497819955 -0.0227192809505797 0.126711915635738 -0.0153915222802144 -0.310603671656735 1.42967960044773 1.41412509088246 1.54654512938451 -0.316739776836251 -0.953121267977086 1.48440469080582 1.15104485655373 0.788837388191821
49461 0.0837826029276886 -1.36087634818502 0.0307494454193156 -1.48390829518621 -0.610507975314172 -0.525692818723145 -0.101297525344115 0.00718926689541999 -0.317338027928322 -0.165528213588379 -0.0346751919775806 -0.076467824164245 -0.501674430671882 -0.21971304456202 -0.277645331562162 -0.22591323721841 0 -1.76222420482335 -0.149486362401747 -0.208594761699346 1.05174838742445 1.06853128069448 0.333345207775605 0.304074921058963 -0.529198771571442 -0.72807848154209 -0.958643985666098 -3.2228469638161 -2.38375841729502 -0.627494241554657 1.05713267094556 1.019802053778 0.40232633107042 0.289912665220152 0.329156424700916 1.20596775103271 0.975933011109641 0.929212943959726 0.72267400187084 0.663835906797 0.695658796377169 1.22631180687067 1.16182040736227 0.261730980441113
50015 0.0420415557767363 -0.129941563097134 0.661268193549393 -0.389406279017895 -0.173140870598414 0.0204976043666556 NA NA -1.14267968668455 -0.132055831128963 -0.956790411647297 0.0856339332713638 0.0438973221004159 -0.599086535312506 0.915278172074998 0.341791734061791 -1.04244275711309 -0.929757614156538 -0.0329537831864544 -0.967905668879776 2.09890363219351 2.85243780017619 0.567203755285357 0.599835024173665 -0.829709595076868 -0.191762060755306 -0.147585829660474 0.0163346196157186 0.183238743106029 -0.471847606319469 1.40141372191679 2.10130427451502 0.370593445397935 -0.00324485024791823 0.0446395322238619 0.224694627272926 1.70122917508403 1.54121949094034 1.78133371743285 0.681567332938546 0.67640160276167 1.85127020745711 2.62458524664407 0.511509000959881
c23389-22907_cytochrome 0.0130906793167173 0.0525924552619981 0.168593145480301 0.0427559406256878 0.243776138062846 -0.632061861467459 0.166653257588257 -0.257035145695803 NA NA NA NA NA NA NA NA NA NA NA NA 2.1274417930687 1.87542939254895 -0.175830339635125 -0.050958626035524 0.286939129189339 0.486337375007104 -0.463510744565887 -0.43721707746327 -0.615822376069569 0.160988342055652 1.49595025199227 1.28142873337397 0.0632558734658478 -0.0892098527870594 -0.131240200076149 -0.0552906922360633 1.78230497281152 1.55764198102982 0.621816507726991 -0.230009973764915 -0.865140654173681 1.84368731412869 0.891890448609869 -0.26550524525618
c8693-8238_photosystem 0.701324170043018 0.0381103575839199 -0.0524455846224388 -0.418345544738028 0.0280627035515676 -0.0772054304644788 -0.256129464204923 -0.575280675620903 NA NA NA NA NA NA NA NA NA NA NA NA 1.8278884669183 1.83029486619452 0.10418001195965 0.174469876207648 -0.757377216044552 -0.706234424189533 -1.101298128159 -1.92423505532289 -1.22836607286606 -0.66681382089338 1.28887575552591 1.42555363070241 0.0554696644161663 -0.456294422959271 -0.350405728034134 0.131224263938784 1.62676297884825 1.39982260899345 1.15312011079226 -0.0956209462932056 -0.237775500850028 1.98459037241583 1.40577953912561 0.112164550910414
[+] Show/hide bicluster #19 motif PSSM #1. bicluster 19 motif PSSM #1 Phaeodactylum tricornutum 24x4
POSITION A C G T
1 0.909091 0.090909 0 0
2 0.272727 0 0.454545 0.272727
3 0.727273 0.272727 0 0
4 0 0.636364 0.090909 0.272727
5 0.090909 0.090909 0.545455 0.272727
6 0.454545 0.363636 0.181818 0
7 1 0 0 0
8 0.727273 0 0 0.272727
9 0.818182 0.181818 0 0
10 0.181818 0.090909 0.727273 0
11 0.181818 0.454545 0.363636 0
12 0.636364 0 0.090909 0.272727
13 0.727273 0.272727 0 0
14 0.636364 0.363636 0 0
15 0 1 0 0
16 0.090909 0 0.454545 0.454545
17 0 0 0 1
18 0 0.090909 0.090909 0.818182
19 0.272727 0.181818 0.090909 0.454545
20 0 0 0.727273 0.272727
21 0 0.545455 0 0.454545
22 0 0.090909 0.545455 0.363636
23 0 0.090909 0.272727 0.636364
24 0 0.363636 0.090909 0.545455 [+] Show/hide bicluster #19 motif PSSM #2. bicluster 19 motif PSSM #2 Phaeodactylum tricornutum 23x4
POSITION A C G T
1 1 0 0 0
2 0.666667 0.222222 0 0.111111
3 0 0.888889 0 0.111111
4 0.666667 0.333333 0 0
5 0.777778 0.222222 0 0
6 0.222222 0.555556 0 0.222222
7 0.555556 0 0.444444 0
8 0.111111 0.777778 0.111111 0
9 0 0.111111 0 0.888889
10 0 0.777778 0 0.222222
11 0 0 0.111111 0.888889
12 0.444444 0.222222 0 0.333333
13 0 0.888889 0.111111 0
14 0 0.222222 0.666667 0.111111
15 0 0.111111 0.777778 0.111111
16 0.222222 0.111111 0.333333 0.333333
17 0.222222 0.222222 0.333333 0.222222
18 0.222222 0.777778 0 0
19 0 0.333333 0 0.666667
20 0 0.666667 0.333333 0
21 0 1 0 0
22 0.111111 0.555556 0.333333 0
23 0.555556 0.444444 0 0 |