[+] Show/hide bicluster #24 rows and columns.
bicluster 24
Phaeodactylum tricornutum
37x51
[+] Show/hide bicluster #24 rows (genes).
bicluster 24 genes
Phaeodactylum tricornutum
37
[+] Show/hide bicluster #24 rows (short gene names).
bicluster 24 short names
Phaeodactylum tricornutum
37
short_name
[+] Show/hide bicluster #24 rows (long gene names).
bicluster 24 long names
Phaeodactylum tricornutum
37
long_name
[+] Show/hide bicluster #24 rows (NCBI RefSeq gene IDs).
bicluster 24 NCBI RefSeq IDs
Phaeodactylum tricornutum
0
[+] Show/hide bicluster #24 gene upstream sequences.
bicluster 24 upstream sequences
Phaeodactylum tricornutum
37
upstream
[+] Show/hide bicluster #24 columns (arrays; conditions).
bicluster 24 arrays
Phaeodactylum tricornutum
51
[+] Show/hide bicluster #24 ratios.
bicluster 24 ratios
Phaeodactylum tricornutum
37x51
GENES GSE12015_Si_free_11v18_2 GSE12015_Si_free_22v19_1 GSE12015_Si_free_22v19_2 GSE17237_highlight_12hr_1 GSE17237_highlight_12hr_2 GSE17237_highlight_12hr_3 GSE17237_highlight_24hr_1 GSE17237_highlight_24hr_3.1 GSE17237_highlight_30min_1 GSE17237_highlight_30min_3 GSE17237_highlight_3hr_3 GSE17237_highlight_48hr_1 GSE17237_highlight_48hr_2 GSE17237_highlight_6hr_3 GSE31131_Cadmium_1.2mg_2 GSE31131_Cadmium_1.2mg_3 GSE34988_Cadmium_2 GSE34988_Control_6 GSE34988_Dispersant_2 GSE34988_Oil_4 GSE34988_Oil_5 GSE34988_Salinity_15ppt_4 GSE34988_Simazine_4 GSE34988_Simazine_5 GSE42039_Dark_treated_48h_1 GSE42039_light_24h_1 GSE42039_light_24h_2 GSE42039_light_24h_3 GSE42039_light_6h_1 GSE42039_light_6h_2 GSE42514_light_0.5hr_1 GSE42514_light_0.5hr_2 GSE42514_light_10.5hr_2 GSE42514_light_15.5hr_1 GSE42514_light_15.5hr_2 GSE42514_light_6hr_1 GSE42514_light_6hr_2 GSE55959_BlueLight_6h_rep1 GSE55959_BlueLight_6h_rep2 GSE55959_BlueLight_6h_rep3 GSE55959_GreenLight_24h_rep1 GSE55959_GreenLight_24h_rep3 GSE55959_GreenLight_6h_rep1 GSE55959_GreenLight_6h_rep2 GSE55959_GreenLight_6h_rep3 GSE55959_RedLight_24h_rep2 GSE55959_RedLight_24h_rep3
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43251 -0.895945764729749 -0.509055846802201 -0.573690662861356 3.02036657487576 1.19405930331083 0.556897863731674 0.999180738000345 0.989353795350214 1.48617803928397 0.691019701946557 0.656947045120681 0.392930669456868 0.711987726397975 1.71161570056631 -0.128620220696294 0.334161999025831 NA NA NA NA NA NA NA NA -3.27729391457041 -0.146445021374572 0.473949106764078 0.0603442177128274 0.369326027254895 -0.175712681477223 0.818877609499886 1.06592262035496 1.53335324688518 1.88054551497616 1.54836600788414 1.35568589519498 1.12180311584241 -0.343407001916749 0.000535921293093178 -0.26706194230013 -0.525795550613765 -0.550631914721298 0.041521823414069 -0.122113331189157 -0.0181520273303817 -0.363417962760698 -0.574013039418594
43743 0.115175508555638 0.151752382100155 0.0480675256888376 1.916855567131 1.11960668490919 0.896502870698192 1.05698163621318 0.966812085720665 0.626704596516766 1.13887755836756 0.498065848278177 0.183773772303219 1.13732681984456 0.72951281711586 -0.724321174051143 -0.533383848384541 NA NA NA NA NA NA NA NA -2.43459206166372 0.386917170129828 0.350620526332176 0.152742635468172 -0.184011794482332 -0.477449103959238 0.953171507568206 1.15188544339423 1.08908949880754 0.236511973621125 0.635499384685112 1.8032354869058 1.25629817676432 -0.237532099728115 0.0441653668916796 -0.465795045913337 -0.0094064396133571 -0.135488069184296 -0.498095353269319 -0.618213849962745 -0.551063338922829 0.329655205551437 -0.0131832636667531
44132 -0.284276623861392 -0.193399505438556 -0.112582584627103 1.64551742954316 0.811282249417541 1.14126008447014 0.530106432977763 0.908000989253388 0.982218420431773 -0.247006945110418 1.17757739784724 0.696015858585506 0.606553874626671 1.0719352627301 -0.225320512459478 0.222163784093295 -0.735835832798899 -0.0834462964744494 -0.881938791650337 -1.05713758576148 -0.884118249627863 -1.19629900826107 -0.309834618769349 -0.701615181972987 -1.65934484403029 1.08238898498821 0.961460979648108 0.31282651735876 0.316815651713381 -0.116873507594168 1.32618158182857 1.17562681827389 1.09668319046721 1.73555679088248 1.66655108981238 1.66940451485479 1.15296796651549 0.120868851741806 0.593546485085681 0.0103272520299995 -0.0414988329375473 0 0.510776902878807 0.228876354766195 0.256503717259527 0.578291068008836 -0.263770792069283
45227 0.0626900375733331 -0.523014567442601 -0.782076219661187 0.852077173500257 1.69940275961781 0.957491487347463 1.72117269894313 1.20793026621443 0.568924039130909 -0.415203620435982 0.915616111099956 0.407442275914657 1.38899183401502 0.605661985028863 -0.37023702543978 -0.513196506275186 NA NA NA NA NA NA NA NA -3.02715677268715 -0.383788371760754 -0.417868099773249 0.00806946985251773 -0.731578425885611 -0.614198946469629 0.939845345822183 2.5254020471293 1.27821476667178 1.34081833792854 1.76803270063262 -0.606601919840328 1.13965655199943 -0.974624992597232 -0.674870828279953 -0.829704403666611 -0.146290394681862 -0.111546503626629 -0.367606235613644 -0.563769391021748 -0.680756867312199 -0.321119553169883 0.292423345761588
47402 -0.379207787475337 -0.328546296791022 -0.0178224872605612 0.783018463676081 0.935745970925727 0.528252754012851 1.12891326809221 0.839495098800904 -0.467646856409151 -0.606715628425281 0.758520156161246 1.22526744992352 0.832726326300455 0.26816460774008 -0.664655155483721 -0.442928684647163 -0.405927876186987 -0.589651315206874 0.42034923572694 0.043955657635821 0 0.178552470333867 -1.70613786929483 -1.92823220215551 -2.72569527285254 -0.0703110631264737 -0.123385450036237 -0.351907661828957 -0.195487500397159 -0.0460702664880305 1.89615622900046 1.47068115673068 0.826540421845841 1.55761447882011 1.62224867381138 1.31775396041632 1.57630485025929 -0.556748002198505 -0.0677077572983414 -0.197524163224017 -0.430151225412586 -0.380242617706228 -0.384691045947302 -0.170472063055409 -0.345263219041014 0.0418249306188674 -0.0318688590602313
47831 0.0711089609499534 0.144991239829473 -0.0936602482972282 1.94235358376158 1.63381884169155 1.13037561152982 1.19874017418508 0.844574329397545 1.17098741022185 0.262135697564 2.23799997273821 1.2192219837189 0.655558832597441 1.51383050258745 0.26178974086131 0.498828718933101 0 -0.00775566908824609 -0.786524196104023 -0.784085095803947 -1.20105310583479 0.0371052812360037 0.405859369625836 -0.646989051160017 -2.18245038617527 -0.503086965979308 -0.476342565695436 0.394751815999653 -0.35895289710621 0.0788840864270504 2.24977160894736 2.47689645497356 1.71165416837248 1.38725406923183 1.62370452431705 0.68165944971936 1.56981723244574 -0.204769109721035 -0.691521984145901 -0.654981541568112 0.074052587540197 0.125752283147051 -0.745333958434751 -0.60718570252256 -0.830324869536447 -0.737902481511264 0.203349590759941
48094 0.165703401453782 -0.156308242234763 -0.635764757521419 1.62640264889307 0.382956975972055 0.755862229285908 0.631796179173774 0.171400921847639 1.32353111277764 1.20505829808787 1.26353164466572 0.502383616620619 0.612065971274153 1.55565674164541 0.063687263973054 0.364841913362657 0.463952450461881 0.232196772530484 -0.174357470292755 -0.231755562508419 0.115171121661912 0.363113499544137 0.134752621735718 0.804194951231222 -3.36549184420404 -0.720980804247161 -0.498454253532819 0.0579376490087031 -0.125888279691969 -0.0735968445293619 1.02749737727299 1.19708794914413 1.19161082635612 1.29892364862124 1.15412603961933 0.536870696270091 1.16406750285086 -0.443007913631687 -0.403629736797037 -0.614182673269767 -0.189462528287803 -0.108030328251774 -0.871225503121344 -0.60308187465928 -0.751941446905941 -0.579389498786488 0.0702049437259513
49892 -0.548133071087172 -0.257583421851435 -1.24766293310582 1.63440404609647 1.84871402004871 1.26834306954305 1.18723392425504 1.15665120506171 0.534949961720811 0.916991168982192 0.921791554491304 1.15956459692497 1.24627550786876 0.437011833352748 -0.693423686446847 -0.929163670872951 -1.48022978211183 -0.400664067956697 0.219540736129285 0.545499485576165 0.405635023084959 -0.808251409012518 -0.00420002150563707 -0.117040524284395 -1.44161485267989 0.323965124800269 0.405298802446306 -0.0754613169102366 -0.362330366218615 -0.0635888642593102 1.21486680211089 2.09323790695392 0.21040088170907 0.939107528739462 0.728668467257079 -0.537677923118598 0.250281970590019 -0.45482732917949 0.0143205001956709 -0.538156794453903 -0.186920281540011 -0.248672441731712 -0.170215441227993 -0.253681507424304 -0.6685198982773 -0.262931862110124 -0.430296673921525
50006 -0.625959635026817 -0.0404318186776172 -0.128260991129997 1.3007447387195 1.38458813967916 0.267240742992312 0.546474079210776 0.600424193975036 0.673579621115551 0.650683392325524 0.731005261703998 0.568153246611105 0.195797287657695 0.822146848660297 0.0907745091123751 0.161472810594996 0.667288207957475 0 -0.399132934784674 -0.127841661620211 -0.211470349529616 0.665162273561875 0.0620647615844846 -0.472374593443171 -4.05708361877504 -0.0530905443572936 -0.0087015429037753 0.0699760927716642 -0.253852267742821 -0.024013203889498 1.92419314099461 2.11949811094561 1.38145401171471 1.85919134408843 2.0313406834736 0.986968371011498 1.51649862365531 -0.243119153014398 -0.462410253348138 -0.332321317881291 -0.181708472523405 -0.188258438925792 -0.110340473770676 -0.152343094025723 -0.248976994091897 -0.283812686111249 -0.20434589261597
50340 0.169357733284656 0.0371060632229371 -0.255598000663661 2.46744443713212 1.95036958035331 1.49122289993904 2.20867848563636 1.87969273197033 1.61975985397402 0.525659291450933 1.90333271799386 0.825880306878539 1.54704088421509 1.80341463638473 0.0529568148553343 0.547043219573413 -0.41716689728463 0.0362748846530561 -1.45060453284284 -0.0371085476418714 -0.131578867891003 -0.00491603087881044 0.751685702968583 -0.271206738708989 -2.37141312910217 -1.57362380590133 -0.370741939810366 0.519236731187336 -1.36758059621999 -1.17257335686106 0.842982110641125 1.65848599398195 0.564017282961668 0.900945705013088 1.533307879588 -1.26493756508547 0.872772158232174 -1.53327619107502 -0.0135322643749452 -1.84618006101102 -0.194551096677658 -0.118841991435689 -0.279035138567804 -1.37580171292964 -1.79027296332506 -1.14059300108545 -0.42301583037688
50914 -0.016687077695725 -0.963157522051703 -0.933467547973983 0.503847061749168 0.678182980807396 0.118121807917707 0.770636083788356 0.769031020825092 0.832518355449625 0.962073263882345 0.831798250553483 0.625098619420486 0.20074031202668 0.395290018408651 -0.175918837565687 0.0301771521054017 NA NA NA NA NA NA NA NA -1.47065371544773 0.149673287417705 0.183414711016231 0.361026608266812 -1.36054769156195 -1.3726493847938 2.01826329811618 2.50021204396204 0.572834060858335 0.155614582547092 1.11357219597975 1.41657052080521 1.41957191536889 -0.725800969913665 -0.634587935783695 -0.527310028933149 -0.112903436589509 -0.11497628131079 -1.23277722440271 -1.21300939108179 -1.19062176270056 -0.829537631273594 -0.680646789304714
51604 -0.362650189173441 -0.32135725364388 -0.296272760097885 1.25616023562951 1.54674286801916 1.25112790030889 1.94831859562057 1.08042985130482 1.25924369875924 1.11599194484734 0.877353509862155 1.58816701474574 0.992379419805529 0.575313052651256 -0.719660419625748 -0.927502814842157 -0.874435388488023 -0.649383988727792 -0.489567438657861 -0.0625338116691094 -0.65316904584624 0.386047175303939 0.43185672826257 0.732037208868563 -3.72367921749164 0.726833230975037 0.745334138547214 -0.139308006422834 -0.140684133499273 0.248149403540788 1.46128628779266 2.11330956486047 0.918174888614914 -0.190125587792373 1.28680810447945 0.456133463109846 1.51860995970111 -0.591706400612925 -0.58995351133256 -0.394012424816233 -0.394389351272931 -0.456906235221926 -0.245167414232774 0.0118614469956773 -0.935992117407371 0 -0.771520980731113
54960 -0.0188664006541014 -0.235605299929577 -0.411705655590901 2.16744854241239 0.504054897222855 1.16526335351254 2.1032783468769 1.42308588521318 1.42240857615294 0.816139560492105 0.850333992190298 -0.0566795979026978 1.61280982882896 0.94242867269494 -0.102659207248995 -0.0161184610382873 -0.499752432039968 -0.202986930291403 0.507130707963492 0.904982340221349 0.332406063761944 1.06632538931982 -0.183210428808006 0.0504436179005005 -1.1291903828401 0.223681070919263 0.333608087889285 -0.0125003744591974 -0.56369096187156 -0.0344037776505633 0.490101484589368 1.35645463887649 1.14772467981595 0.932382592544779 1.41739143385174 -0.136776344789555 0.384547743930228 -1.00655526753557 -1.18519988627087 -1.2981443893103 -0.560739217086037 -0.547984263062802 -0.725818270223381 -1.02159328133087 -1.53874031010807 -0.626409618682333 -0.667996651873282
55086 0.514216885089548 0.310324710718771 0.231748324582526 2.44350424865808 1.79120170176538 0.726955676727042 0.706701935817786 0.158651963996644 1.19508465787332 0.317433841516184 1.14769835535468 0.146679225850453 0.564790272925169 1.17818057411443 -0.334607913060445 -0.416930225190945 0.402598659495532 0.0338637941800823 0.544292174696138 0.846998286667342 0.89899587150168 -0.821410902596032 -0.23172762546253 0.128172923854927 -2.31633565663141 -0.193927335417293 -0.0434523730976745 -0.477179648344394 -0.367837783392053 -0.0693506502706095 1.76334030209311 2.38603003164113 2.54954904265834 1.32109097176597 2.59256595482122 -0.113911037279989 2.13672578852076 -0.347269461098175 -0.653775632758295 -0.0550980719348432 -0.477729183444114 -0.470601246004208 -0.579094757975871 -0.0203774344379738 -0.341987245807265 -0.00907932047119338 -0.435675820399243
5512 0.179981712328013 0.0220389273137963 0.09471198790316 2.59310522380995 1.84152043119475 1.59731956813167 1.33219855336026 1.24223899409204 1.54357057251978 0.834107085822171 1.38081198602384 0.192161717282791 0.693780250694815 1.71072830161672 0.793710553875896 -0.629925633845504 -0.458843799782317 -0.155444060389154 -0.578428018643496 0.140562693123063 -0.740492199510892 0.0252791690901476 -0.522507862052918 0.555525132667983 -2.26227655224006 -0.667651394995792 -0.822063732815008 0.521278277016219 -2.07772178836079 -1.08210064855794 1.00637016353218 1.6041970909841 1.03374763819324 1.071258653447 1.41704649217963 -0.52372542455533 -0.0224664031007179 -2.0681705111316 -2.33358598712609 -1.45511776233004 0.169855584793889 0.180303890529733 -1.91862318837693 -1.56708896383489 -1.32787859818709 -1.37047688944073 -0.0523873304768225
5902 -0.446306542854867 -0.290804115207113 -0.346919812589079 1.45253660734993 1.98750959594476 0.541068282932209 1.39885957428438 1.1612606101421 0.911749813873743 1.06401465729267 1.33575036701928 1.52676783651985 1.17322892235321 0.958391432476936 0.0168893673613905 0.0412104207494381 NA NA NA NA NA NA NA NA -1.42341912749203 -0.172977304254714 -0.133755018268979 -0.0308121498874979 -0.280261951942362 -0.242520429869934 0.890363485005432 1.65820409936085 2.1563847142532 0.963421014313885 2.12625508092326 1.53832121646015 2.44336091581828 -0.0220126701587692 -0.0405346184742015 0.0826757748758414 -0.305260509177482 -0.248411283474689 -0.23402725832608 -0.18506976189681 -0.0286550454957881 -0.476999969666389 -0.374750786345292
769 0.151518644660888 0.466301237444651 -0.341981500800779 1.70728842823191 1.67381149336442 1.18020912287261 1.33470286841043 1.33395556819016 0.901938490850938 -0.0719205961989599 1.03353030463829 0.872913632295714 0.848164600000811 0.823746917803576 -0.117336709585589 -0.203262134912543 -0.688873395023922 0.0240184229545518 -0.51755813302788 -0.38966764083151 -0.386855430252597 0.224180494645837 -0.170426528159082 -1.42519827780941 -3.1359616523918 0.87652830584811 0.910908254007008 0.543983961121338 -0.179559235631874 -0.320288217313035 0.870788010684949 1.35977293231832 -0.0263213672292783 0.951420120236476 0.891088316253047 -0.22886594337582 0.390697685058005 -0.707427289793228 -0.0700509757214098 -0.319049864602649 0.0627855893273271 0.22449237534848 -0.0843119631650421 -0.00823358828919733 -0.369385166683047 -0.099779273832803 -0.293882659964647
8269 0.0822383944326091 -0.804419246513139 -0.897436459633516 2.66733844894055 2.4549438227756 1.23814294188868 1.83374453317918 1.48180013440324 0.725278764414496 0 1.52011284660566 1.22203459618307 0.887907185482515 1.06827674367959 0.190002628379883 -0.328682111185706 NA NA NA NA NA NA NA NA -1.94432065101155 0.120330403234638 0.00953374577224849 0.0499595355360699 -0.263312784713083 -0.191770704738405 1.50607043333588 2.22837370215309 1.30369781364071 1.9832436107013 1.90910836639461 0.909401240422035 0.830379554485421 -0.714403440386313 -0.773406312559413 -0.919662485673346 -0.315168887314921 -0.433019221862364 -0.615655411875874 -0.778578718835808 -1.56414237886881 -1.03390114510877 -0.549211915873085
[+] Show/hide bicluster #24 motif PSSM #1. bicluster 24 motif PSSM #1 Phaeodactylum tricornutum 15x4
POSITION A C G T
1 0 0.727273 0.090909 0.181818
2 0 0.090909 0.909091 0
3 0.909091 0.090909 0 0
4 0 0.818182 0.181818 0
5 0.090909 0 0.818182 0.090909
6 1 0 0 0
7 0.090909 0.636364 0 0.272727
8 0.090909 0 0.909091 0
9 1 0 0 0
10 0 0.909091 0 0.090909
11 0 0 0.909091 0.090909
12 0.818182 0.090909 0 0.090909
13 0.181818 0.818182 0 0
14 0.454545 0 0.363636 0.181818
15 1 0 0 0 [+] Show/hide bicluster #24 motif PSSM #2. bicluster 24 motif PSSM #2 Phaeodactylum tricornutum 23x4
POSITION A C G T
1 0.076923 0.384615 0.461538 0.076923
2 0 0.153846 0.769231 0.076923
3 0.230769 0.153846 0 0.615385
4 0 0.615385 0.384615 0
5 0.076923 0.153846 0.692308 0.076923
6 0.230769 0.076923 0.307692 0.384615
7 0.076923 0 0.846154 0.076923
8 0 0 0.923077 0.076923
9 0.153846 0 0 0.846154
10 0 0.153846 0.538462 0.307692
11 0 0.076923 0.923077 0
12 0.153846 0.461538 0.230769 0.153846
13 0.230769 0.230769 0.076923 0.461538
14 0.230769 0.230769 0.384615 0.153846
15 0.153846 0.230769 0.230769 0.384615
16 0 0.230769 0.769231 0
17 0 0 1 0
18 0 0.230769 0.230769 0.538462
19 0.153846 0 0.769231 0.076923
20 0 0.076923 0.846154 0.076923
21 0 1 0 0
22 0 0.230769 0.769231 0
23 0.230769 0.076923 0.692308 0 |