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[+] Show/hide bicluster #37 rows and columns.
bicluster 37
Phaeodactylum tricornutum
33x55
[+] Show/hide bicluster #37 rows (genes).
bicluster 37 genes
Phaeodactylum tricornutum
33
[+] Show/hide bicluster #37 rows (short gene names).
bicluster 37 short names
Phaeodactylum tricornutum
33
short_name
[+] Show/hide bicluster #37 rows (long gene names).
bicluster 37 long names
Phaeodactylum tricornutum
33
long_name
[+] Show/hide bicluster #37 rows (NCBI RefSeq gene IDs).
bicluster 37 NCBI RefSeq IDs
Phaeodactylum tricornutum
0
[+] Show/hide bicluster #37 gene upstream sequences.
bicluster 37 upstream sequences
Phaeodactylum tricornutum
33
upstream
[+] Show/hide bicluster #37 columns (arrays; conditions).
bicluster 37 arrays
Phaeodactylum tricornutum
55
[+] Show/hide bicluster #37 ratios.
bicluster 37 ratios
Phaeodactylum tricornutum
33x55
GENES GSE12015_Si_free_11v18_1 GSE12015_Si_free_11v18_2 GSE12015_Si_free_22v19_1 GSE12015_Si_free_22v19_2 GSE12015_Si_free_23v20_1 GSE17237_highlight_12hr_2 GSE17237_highlight_24hr_1 GSE17237_highlight_24hr_3 GSE17237_highlight_24hr_3.1 GSE17237_highlight_3hr_1 GSE17237_highlight_3hr_2 GSE17237_highlight_48hr_1 GSE17237_highlight_48hr_3 GSE17237_highlight_6hr_2 GSE17237_highlight_6hr_3 GSE31131_Cadmium_0.12mg_1 GSE31131_Cadmium_0.12mg_3 GSE31131_Cadmium_1.2mg_1 GSE31131_Cadmium_1.2mg_2 GSE31131_Cadmium_1.2mg_3 GSE34988_Cadmium_2 GSE34988_Cadmium_5 GSE34988_Control_2 GSE34988_Control_3 GSE34988_Control_6 GSE34988_Copper_1 GSE34988_Copper_2 GSE34988_Copper_5 GSE34988_Dispersant_1 GSE34988_Dispersant_2 GSE34988_Dispersant_3 GSE34988_Dispersant_4 GSE34988_Oil_2 GSE34988_Simazine_1 GSE34988_Simazine_2 GSE34988_Simazine_3 GSE34988_Simazine_4 GSE42039_Dark_treated_48h_1 GSE42039_Dark_treated_48h_2 GSE42039_light_24h_2 GSE42039_light_24h_3 GSE42514_dark_8hr_light_3hr_1 GSE42514_light_0.5hr_1 GSE42514_light_10.5hr_1 GSE42514_light_6hr_1 GSE55959_BlueLight_24h_rep1 GSE55959_GreenLight_24h_rep1 GSE55959_GreenLight_24h_rep2 GSE55959_GreenLight_24h_rep3 GSE55959_RedLight_24h_rep1 GSE55959_RedLight_24h_rep3 GSE55959_RedLight_6h_rep1 GSE55959_RedLight_6h_rep2 GSE55959_RedLight_6h_rep3
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47331 0.000127210283226206 -0.0361828700911062 0.33644188916024 0.334953771112111 0.34953732798377 -0.598387916201815 -1.63393950353339 -1.24589784130344 -0.947711723055567 -0.1110858039256 0.584070684840995 -0.805266087252623 -1.7294260862096 -0.445165329494325 -0.1233300392256 0.451446628155697 0.343129491668529 -0.626269295951548 0.135691788231625 -0.310728745026407 0.22927066458297 0.976732843489654 0.0240970211474404 -0.104433951965299 0.011421728644911 -0.0618117212662208 -0.446845078455983 -0.532125686241529 0.559747359629503 0.871929228120019 0.1112397184872 0.490381370784944 -0.30133783322436 -0.0882842252538885 0.65202326809215 0.275829635684352 0.04044892357687 2.6474863762866 2.75441393257362 0.217718230236736 -0.164958239838482 0.347113068487088 -1.1496454003824 -0.332728568383935 -0.480790420654082 0.25824883983996 -0.287863438197428 -0.031135489947293 -0.312912755273182 -0.261641052218578 -0.630677803466466 -0.319909178456705 -0.153810310705694 -1.15269301911141
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47957 0.455083304870878 0.0425306717858936 0.0631435799343225 0.493069949887268 0.367920150414664 -1.3992362439548 -1.49442665378425 -1.21460348096816 -1.38448918052518 0.0942455136291377 0.589031871421697 -0.956691829513854 -1.70433378686203 -0.57144541032321 -0.151539858431565 0.130394665119154 0.135232809131707 0.253009076889501 0.683309423890283 -0.0717384568855041 -0.274175854370661 -0.3799650976529 0.277051681919197 0.105689874341458 0.176241094954956 -0.380528242303515 -0.248906873082654 -0.176868543044891 -0.667203499152279 -0.637772977838185 -0.73261841592626 -0.819292013813949 0.297646246051724 0.36835604618466 0.410786289428136 0.482053684922344 0.423857555817001 3.33497242526066 3.52105360063333 0.311656223759682 -0.256043614691993 1.03673212272115 0.417991390732779 0.267901714344068 0.983498178420907 0.294179216855423 -0.300757736904338 0.378793932690306 -0.317771214938225 -0.362848616778949 -0.825239256343997 -0.264664626776194 -0.400664491899684 0.238191854787329
48238 -0.193133696147159 0.48555700489207 0.567854932419662 0.764871183167533 0.411809511393319 -2.37241488120539 -2.03572729059641 -0.400581476410216 -1.31001632776025 -1.47329042822181 0.794366617886188 -0.46129312069583 -1.8629907098096 -0.709483719106312 -0.977778525527106 0.709792137298417 0.267912832049621 0.255090743687205 0.0803554989461553 0.0285612448164529 0.832010947563646 0.358669073367435 0.0310451209630652 0.0834637349109153 0.183931940405537 0.18072442321366 -0.0232288124752138 -0.430593667297446 0.318428985114097 0.148343323890696 0.460005236983006 0.162071562312723 0.241948381004835 0.74229772737816 0.624632817711117 1.01680157397623 0.494662835925935 3.81006665519306 4.00182074483533 0.82597674986844 0.70750737587999 1.04000003544106 -1.88840754161587 0.852087369575936 0.930768378948225 0.493474107067024 0 0.343334648266033 -0.0166484775134934 -0.933987942060294 -1.11295412982054 -1.44862290171788 -1.04807930337994 -0.80872345904266
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49367 -0.475711330333525 -0.280631928168063 0.0501385417849363 0.213268523557211 -0.305063837880501 -0.754314974606295 -1.39850080141695 -1.39376101093273 -1.11312106095432 -1.18858935067837 0.842480408780645 -1.01712996707182 -1.47058621133466 -0.476602155349194 -0.354634303309366 0.438959229214687 -0.0149518244443376 0.454829633950585 0.366076963164816 0.0967283142288843 -0.0462479042488526 -0.720738883929046 0.171523573750871 0.090824600095156 -0.0258720862179905 -0.635519537132112 -0.0644596940676006 0.110502379671757 0.45479363760361 -0.242773423632684 0.34863755371637 0.58547911452304 -0.816469853148211 0.720963018509992 0.811593112413172 0.864512967138292 0.488132256383046 3.01704965046151 3.20815782114086 0.555593736869111 0.105553336318489 0.06174278845 -0.986941406211549 0.685879095920381 0.727738365665839 0.24720808357588 -0.356236490990185 0.339391074911416 -0.269454919228978 -0.133345266967294 -0.614986612683207 0.268720750399964 0.0782190705804847 0.339391074911416
49409 0.689959957772102 0.565217218989595 0.692846036561415 0.643782697143102 0.628390276933435 -1.34694145585257 -1.25738001751178 -0.792153736937237 -0.68154637071394 -0.391094608111739 0.759863992803462 -0.63066480165836 -0.884796866074169 -0.345943508830049 0.244063991577529 0.699904102578389 0.59592509730788 0.210130118523634 0.283834157294255 0.301035186878558 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3.36331673936072 3.46638130732985 -0.357685383982193 -0.17761313579266 0.323316396142994 -1.44146087136956 0.332011452572655 0.261021154175234 0 0.022321170780084 -0.792555872752647 -0.0534823953534406 0.132319657243419 -0.179343728444124 0.284147455535857 0.100764371468462 0.129075207417533
49580 0.13251539421862 -0.0986816957998971 -0.218770750326718 -0.0295021891750445 0.312905576552713 -0.135794345659562 -0.372332832599084 -0.0902446699177563 -0.223935606073547 -0.0481683391376493 0.285987153099547 0.329344433794606 -0.198554733079195 0.0787852931385342 0.0809797409896311 0.64157186995564 0.239519873812895 0.992303757326239 0.751208044727751 0.622954987297456 1.07535859793697 1.5657994637545 0.258508373932049 0.285246861899045 0.309049635390241 -0.333494330248169 -0.383564589091278 -0.274904009586926 -0.087580008412716 0.00899867818025822 0.103190856547067 -0.118016281625908 0.210421397114874 0.402912824146961 0.852028367392137 0.526566419468769 0.681557253569351 4.3548395316456 4.41333736211406 -0.126726736148524 -0.200139259230791 0.0815644761661846 -0.791604825378781 0.345588034077636 0.192286100578304 0.221586329603096 -0.0733655715792913 -0.230857385038886 -0.0897922932497175 -0.000647904332571678 -0.223682840533036 -0.690027022242769 -0.752218606780429 -0.637299207876364
50115 0.24325935998897 0.221466649551074 -0.0154907090130958 -0.155762098733077 0.210416824540309 -2.23051407550423 -1.21865397470601 -0.232644325641306 -0.897917456789394 -1.01795231976049 0.924864746382135 -0.199872386296881 -0.970447280401717 -1.63576338309151 -0.733892012692106 0.106296778980546 0.426707940938513 0.945282367485358 0.153439629630637 0.102048735143074 0.705006889964712 0.0264838522582997 0.0341955619660622 -0.0582807980153169 0.0692399453995867 -0.469355359818168 -0.629700107204371 -0.281692344915561 0.396453080368087 0.52049200090163 0.785017337680468 0.145136567819002 1.02006758852965 0.51089937156416 0.324998527505145 0.898057262398296 0.74203603529318 2.83602257122082 2.86581306281264 -0.286168362543663 -0.338402468823334 0.449658771576363 -0.100805682854858 -0.373347981833439 0.294775328283772 -0.318931935790273 -0.244743851965752 -0.178855008381362 -0.365791566154803 -0.251086168178195 -0.446164563957992 -0.208810877653767 0.140491503657872 0.086186740528256
50150 0.552595513428137 0.295984283869283 -0.275801173686249 -0.275736175907739 -0.0392092599085824 -1.28679222010305 -0.864397656675698 -0.789109429871592 -1.19466176893134 -1.74699989115657 -0.318746505903607 0.390982437028867 -1.41777054353482 -1.24493885056466 -0.525273047253527 -0.0535139710031398 0.236123929772393 0.27254088511617 0.124673538916269 0.277667909885067 -0.155153337613116 -0.0585643326255571 -0.0422902252408922 -0.0268283612954262 0.0590951634161919 -0.0363147233711885 -0.0724765533346242 -0.0298545135677997 -0.0752028500554404 -0.465978200262106 0.449241765412172 0.10618516737724 0.315705194416011 0.161431615167907 0.373823816041715 0.619194654773882 0.456767351203213 3.63217134117342 3.88935763869453 -0.868588226983221 -1.11021376284745 1.1846252756516 -1.80133778567766 1.18353290782395 1.0391908908863 -0.293840073253522 -0.555826448831359 -0.162561618616022 -0.605814468155606 -1.00703535290573 -1.24772050836292 -0.943496875598704 -1.44698303635446 -0.734772241664835
6606 0.221599716823398 1.12422003867104 0.105899140393208 0.0790192084952851 0.246142263338892 -2.66171708245149 -1.10952567590017 -1.02230224471257 -1.06186249231016 -0.679785686413861 0.48335571451691 -0.396845185870943 -1.12825981974034 -1.1285130364901 -0.337783352899289 0.256621541136778 0.27177558969952 0.264841346398317 0.2384483697884 0.249367855166643 0.0396129686234427 -0.0433912170452056 0.22405053292134 0.194153846788302 0.258488906886844 -0.222565238782982 -0.161761352485805 -0.0942371715627628 0.646087014411955 0.6935342391752 0.774190599140045 0.667949919994757 0.925542146115719 0.197778383553125 0.14145194594682 0.39583297230096 0.401482911155163 2.15672053831709 2.28346689430101 -0.598808935377907 -0.618082739739091 0.595905134303298 -0.23588423320411 -0.203195661727096 0.504593355956865 -0.684947912342136 -0.250269191217205 -0.18918628471534 -0.410231979192816 -0.932093332487585 -0.884376987807534 -0.623692978563843 -0.692043413866091 -0.237761402388098
8045 1.06658328833272 0.675483546100604 0.408679391881796 0.1993899056383 0.649921471444909 -2.62385496808116 -1.33652971686441 -1.29451525190844 -1.30324150514403 -1.960269900538 0.326867971946246 -0.9059525455859 -0.378664460106904 -1.09647627377278 -0.704341267517108 -0.135431733979979 0.0557725844446139 0.302040806936903 0.538940529067881 0.413494647695062 0.293522405746895 -0.194507091441152 0.296409976942433 0.388624155395212 0.412022109023651 -0.0588501581642948 -0.0617427241892212 -0.324320751729352 -0.17465500911686 0.126215798681815 -0.0209670357141828 -0.0121471485991314 0.293501786099373 0.717114046115407 0.818184687177759 0.81699155178113 0.716364399933017 3.54787904627877 3.51806268668922 0 -0.183266846371241 -0.100028845473992 -1.64750100970585 0.306940004055035 0.218855669528491 0.0463732816029772 -0.182597694848065 -0.13576331072402 -0.282534606642429 -0.111529071987591 -0.486827582281378 -0.860330914536144 -0.780812242989459 -0.80353206765801
[+] Show/hide bicluster #37 motif PSSM #1. bicluster 37 motif PSSM #1 Phaeodactylum tricornutum 11x4
POSITION A C G T
1 0.069767 0 0 0.930233
2 0.27907 0 0.72093 0
3 0.953488 0 0 0.046512
4 0 0.976744 0 0.023256
5 0.418605 0 0 0.581395
6 0 0 0.976744 0.023256
7 0.069767 0.093023 0 0.837209
8 0.232558 0 0.744186 0.023256
9 1 0 0 0
10 0.44186 0.093023 0.465116 0
11 0.372093 0.209302 0 0.418605 [+] Show/hide bicluster #37 motif PSSM #2. bicluster 37 motif PSSM #2 Phaeodactylum tricornutum 23x4
POSITION A C G T
1 0.142857 0 0 0.857143
2 0.071429 0.714286 0 0.214286
3 0.071429 0.5 0.428571 0
4 0.071429 0 0.428571 0.5
5 0 0 0 1
6 0 0 1 0
7 0.642857 0.071429 0.285714 0
8 0.642857 0.142857 0 0.214286
9 0.571429 0 0 0.428571
10 0 0.5 0.142857 0.357143
11 0.428571 0.285714 0 0.285714
12 0 0.857143 0.142857 0
13 0.447675 0.159468 0.373754 0.019103
14 0.233389 0.659468 0.08804 0.019103
15 0.090532 0.159468 0.58804 0.16196
16 0.447675 0.159468 0.159468 0.233389
17 0.214286 0.071429 0.642857 0.071429
18 0.142857 0.071429 0.785714 0
19 0.928571 0 0 0.071429
20 0.714286 0.071429 0.142857 0.071429
21 0 0.142857 0 0.857143
22 0 0.857143 0.142857 0
23 0.428571 0 0 0.571429 |