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[+] Show/hide bicluster #51 rows and columns.
bicluster 51
Phaeodactylum tricornutum
28x61
[+] Show/hide bicluster #51 rows (genes).
bicluster 51 genes
Phaeodactylum tricornutum
28
[+] Show/hide bicluster #51 rows (short gene names).
bicluster 51 short names
Phaeodactylum tricornutum
28
short_name
[+] Show/hide bicluster #51 rows (long gene names).
bicluster 51 long names
Phaeodactylum tricornutum
28
long_name
[+] Show/hide bicluster #51 rows (NCBI RefSeq gene IDs).
bicluster 51 NCBI RefSeq IDs
Phaeodactylum tricornutum
0
[+] Show/hide bicluster #51 gene upstream sequences.
bicluster 51 upstream sequences
Phaeodactylum tricornutum
27
upstream
[+] Show/hide bicluster #51 columns (arrays; conditions).
bicluster 51 arrays
Phaeodactylum tricornutum
61
[+] Show/hide bicluster #51 ratios.
bicluster 51 ratios
Phaeodactylum tricornutum
28x61
GENES GSE12015_Si_free_11v18_2 GSE12015_Si_free_22v19_1 GSE12015_Si_free_22v19_2 GSE17237_highlight_12hr_1 GSE17237_highlight_12hr_3 GSE17237_highlight_24hr_3 GSE17237_highlight_24hr_3.1 GSE17237_highlight_3hr_1 GSE17237_highlight_3hr_3 GSE17237_highlight_48hr_1 GSE17237_highlight_6hr_3 GSE31131_Cadmium_0.12mg_1 GSE31131_Cadmium_0.12mg_2 GSE31131_Cadmium_0.12mg_3 GSE31131_Cadmium_1.2mg_1 GSE31131_Cadmium_1.2mg_2 GSE31131_Cadmium_1.2mg_3 GSE34988_Ammonia_1 GSE34988_Ammonia_3 GSE34988_Ammonia_4 GSE34988_Ammonia_5 GSE34988_Cadmium_1 GSE34988_Cadmium_2 GSE34988_Cadmium_3 GSE34988_Control_1 GSE34988_Control_3 GSE34988_Control_4 GSE34988_Control_5 GSE34988_Control_6 GSE34988_Copper_2 GSE34988_Mixture_1 GSE34988_Mixture_2 GSE34988_Mixture_3 GSE34988_Mixture_4 GSE34988_Silver_3 GSE34988_Simazine_1 GSE34988_Simazine_2 GSE34988_Simazine_3 GSE34988_Simazine_5 GSE42039_Dark_treated_48h_1 GSE42039_Dark_treated_48h_2 GSE42039_Dark_treated_48h_3 GSE42039_light_24h_1 GSE42039_light_24h_2 GSE42514_dark_8hr_light_3hr_1 GSE42514_dark_8hr_light_3hr_2 GSE42514_light_10.5hr_1 GSE42514_light_10.5hr_2 GSE42514_light_16hr_dark_30min_1 GSE42514_light_16hr_dark_4hr_2 GSE42514_light_16hr_dark_7.5hr_1 GSE42514_light_16hr_dark_7.5hr_2 GSE42514_light_6hr_1 GSE42514_light_6hr_2 GSE55959_BlueLight_24h_rep1 GSE55959_GreenLight_24h_rep2 GSE55959_GreenLight_24h_rep3 GSE55959_RedLight_24h_rep1 GSE55959_RedLight_24h_rep2 GSE55959_RedLight_24h_rep3 GSE55959_RedLight_6h_rep2
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54495 -0.653061025491583 -0.215804344405121 -0.0659390478603513 -0.0465216205909653 -0.108471177978551 0.896025650529865 0.15268929268288 -0.318466559523215 0.47520030824421 0.605881500735771 0.191344667824592 0.150479452606583 0.00208813061016534 -0.03284977751995 -0.290588922174932 0.158986776027209 -0.298369354037466 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -3.5840554309525 -3.44515532001133 -3.5939672409527 0.232502723766268 0.224766406790381 -0.0200634179198275 -0.325998731436152 -1.68287306295601 -1.88079655316706 -1.13804494350086 -0.91219668121094 0.268365544946166 -0.502098198498195 -0.235069142238153 -0.530557515109755 -0.0117479244962524 0.375746620532133 -0.512663759782061 0.00360511430974656 0.219274185026272 -0.489702846420142 0.453117488164959
55177 0.030269717073769 -0.61791791711892 -0.517782618148953 1.5501728141276 1.11927877869973 1.37036534905781 1.08903899513444 -0.891276516070483 1.02378415863902 0.411952098314293 0.726807626537925 -0.433459005903437 0.134248919455809 -0.502972284414202 -0.132896984065035 -0.645288232170712 -0.0644281274897642 2.64416693933698 2.92131770512948 2.01572022562967 2.44038659916815 -1.45660661031609 -1.36191883311863 -0.169553028433331 -0.347336565300673 -0.0969280132053657 0.487311695501145 -0.458490025780835 -0.488759263121425 0.392386516890859 1.91733277215237 1.90484783847338 1.72000744407053 1.62583286028029 0.0151154336611861 -0.942299504760204 -0.623905367346757 -1.15003528614348 -1.13979023374475 -3.40615577531072 -3.13082807173675 -2.89647152447054 0.772377873896332 0.793101517729005 -0.690626674305152 -0.256204435738368 -1.5129774374364 -1.24083002945507 0.464679752833059 -0.163257709011543 -0.207572381036737 -0.200262970320409 -0.487869670722992 -0.847052438451702 0.818285721279875 0.689943254792623 0.0554837174940083 0.733065261301689 0.747263724930438 -0.0608925519625661 0.345548050997868
573 -0.600711662425948 -0.264693234874906 -0.195337118156185 0.557128916437299 0.776513474373027 0.524511611660903 0.546936756066623 -1.32255338410277 0.0378070555791417 -0.0608101676241839 0.195464669635208 -0.685541367943638 -0.462788653764962 -0.658779473251139 -0.963376391141626 -0.551126024955783 -0.97223723295 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -2.79404373648952 -2.88295983565907 -3.02196575152825 0.540784264572464 0.621697772602161 -0.995739053609691 -1.05198045668135 -1.44913968031282 -2.1426348045242 -0.161212451373094 -0.631572684541694 -0.149035311044929 -0.624293362336246 -1.65583725030478 -1.46007387411475 0.587670399460743 0.560388851250132 -0.369286110013672 0.321530795932185 0.662794137425316 -0.208848494812456 0.835227446146387
58285 -0.00305982723619388 -0.692296615398679 -0.906759799298461 1.50642477435088 0.948871437585293 0.840544606097671 1.06126339070598 -0.280084112358619 0.867833900068007 0.198805554910996 0.746114581395765 -0.67380489669188 0.11678994301583 -0.460712035748607 -0.377264971248314 -0.168537786043808 -0.20082952292601 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -3.21642030099928 -3.12972053743748 -3.07632793282421 0.43060126773227 0.275131015142095 -1.19181407503746 -0.307562148522925 -1.83645677970721 -0.911976976249689 -0.427476882342935 -0.378140037092641 -0.185840245704981 -0.0535909009909232 -0.86039774195549 -0.804814423419856 -0.195720918024208 0.331884729044266 -0.246389773658605 0 -0.263633518833611 -0.462278470737885 0.146308579266127
7678 -0.0863245742311553 -0.553940294026441 -0.351424012370738 1.05382802785978 0.775030613447097 1.23265412365097 0.786998763147722 -1.04086537873237 0.212640086563076 0.326112490628287 0.373795230416735 -0.634630374998635 -0.260706562730453 -0.212454245899848 -0.996178192276747 -0.452035226187745 -0.755788553225294 2.53333560885559 2.05663408046561 1.4732052059163 2.06830506565016 -0.463769623111026 -0.00786479545868837 -0.0245332918020197 -0.444940398989652 -0.400135913416057 -0.601764113360355 -0.462000567447158 -0.454832979008671 0.171307982892158 2.00903431609811 1.78488704538067 1.73520023822167 1.83911049852137 -0.0970350628980163 -0.440032965385323 -1.14401775724145 -0.657018219674747 -0.535878717949619 -3.9465051161799 -4.45672544997497 -4.38907579350725 0.666468855345398 0.68759161899272 -0.831973425488213 -0.467070749235332 -0.842205821332378 -1.17200249578453 0.093228809607302 -0.336592063259189 -0.438597954766091 -0.490674523770997 -1.10178005754597 -0.816317568389429 0.455584377875437 0.541969956243309 -0.509781266432586 0.25318932968321 0.50327098413438 -0.527394788637896 0.0781147109339621
8112 0.231454322418345 -0.205116049048892 -0.148222569788534 0.452181670424975 0.73524801642117 0.725247149046424 0.244594006914189 -0.74995819482283 0.426389959826947 0.44235109645754 0.279531247545703 -0.359432838509367 -0.21987352091418 -0.154980121814968 -0.428924159605947 -0.369793644222291 -0.217783556369922 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -4.04920145839674 -3.79348425580946 -3.93472527815967 0.809594733830136 0.777824791006551 -0.876606561572737 -0.950434026032173 -1.69298308640666 -1.84356137612923 -0.447157206428151 -0.905256372250899 0.170421561489238 -0.1316983130427 -0.962143374098174 -1.2642438614293 0.606922129064836 0.550676294087406 -0.276183507610188 0.312305850768511 0.375035367583487 -0.375234826095135 0.115722769301699
8926 0.13772148493631 0.140097924886403 -0.524286786875273 0.124725753323517 1.08408098151915 0.95422211790343 0.497562022179371 -1.06232637123315 0.576707657260107 0.13994175883254 0 -0.641699894980932 0.212358673940298 -0.00553031525528752 -0.651806554597256 0.102387217792644 -0.513273685163699 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -2.9524673288855 -2.80677473898107 -2.5341009211787 0.64840659401822 0.61228728435905 -1.1649443196119 -0.973879420794773 -1.43374442237328 -1.98426829868806 -0.513132228599693 -1.34908587815335 0.0722402074017503 -0.3012814897917 -0.114450154220167 -1.54385685631631 0.43064487256679 0.47824073217169 0.046355990305219 0.294580270202721 -0.148940877034587 -0.194327435441414 0.113757605246954
9860 -0.78472071811986 -0.137252456011532 -0.43591626715241 0.0160307499800231 0.948123444077789 0.773230712334891 0.151579429667701 -1.55912655003261 1.03670887448443 0.451545807430162 -0.0315211068120232 -0.457716545337876 -0.585101020845098 -0.801250779053989 -1.14637098300809 -0.232639573212036 -0.494782468322714 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -3.09777070469502 -2.84748280630449 -3.22432868318157 0.82875864831322 0.768867216856117 -0.537251035974988 -0.575187467869663 -1.70783442720995 -1.93203749464692 0.0872904508455883 -1.0544080752434 -0.0433277232144069 -0.679172905519974 -0.825075844966859 -1.08174354929616 0.243789229090151 0.755157994150528 -0.331096270483427 0.547802196521379 0.793513904163646 0 1.45939274430614
[+] Show/hide bicluster #51 motif PSSM #1. bicluster 51 motif PSSM #1 Phaeodactylum tricornutum 19x4
POSITION A C G T
1 0 1 0 0
2 0 0.833333 0.166667 0
3 0.333333 0.666667 0 0
4 0.666667 0.166667 0.166667 0
5 0 0 0 1
6 0 1 0 0
7 0.166667 0.5 0 0.333333
8 0 0 1 0
9 0.333333 0 0 0.666667
10 0 0.833333 0 0.166667
11 0.166667 0 0.833333 0
12 0.166667 0.166667 0.666667 0
13 0 0.833333 0.166667 0
14 0 0.5 0.5 0
15 0.666667 0 0.333333 0
16 0.333333 0.666667 0 0
17 1 0 0 0
18 1 0 0 0
19 0.5 0 0 0.5 [+] Show/hide bicluster #51 motif PSSM #2. bicluster 51 motif PSSM #2 Phaeodactylum tricornutum 21x4
POSITION A C G T
1 0.142857 0 0.857143 0
2 0.857143 0.142857 0 0
3 0 0 0.285714 0.714286
4 0 1 0 0
5 0 0.857143 0.142857 0
6 0 0 0.285714 0.714286
7 0.142857 0 0.857143 0
8 0.142857 0.142857 0.428571 0.285714
9 0.857143 0 0.142857 0
10 0.142857 0.428571 0.428571 0
11 0.857143 0.142857 0 0
12 1 0 0 0
13 0 0 0.285714 0.714286
14 0.285714 0 0.428571 0.285714
15 0 0 0.428571 0.571429
16 0 0.857143 0.142857 0
17 0 0 0.142857 0.857143
18 0 0 0.142857 0.857143
19 0.142857 0.428571 0.285714 0.142857
20 0.571429 0 0.428571 0
21 1 0 0 0 |