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[+] Show/hide bicluster #57 rows and columns.
bicluster 57
Phaeodactylum tricornutum
39x56
[+] Show/hide bicluster #57 rows (genes).
bicluster 57 genes
Phaeodactylum tricornutum
39
[+] Show/hide bicluster #57 rows (short gene names).
bicluster 57 short names
Phaeodactylum tricornutum
39
short_name
[+] Show/hide bicluster #57 rows (long gene names).
bicluster 57 long names
Phaeodactylum tricornutum
39
long_name
[+] Show/hide bicluster #57 rows (NCBI RefSeq gene IDs).
bicluster 57 NCBI RefSeq IDs
Phaeodactylum tricornutum
0
[+] Show/hide bicluster #57 gene upstream sequences.
bicluster 57 upstream sequences
Phaeodactylum tricornutum
39
upstream
[+] Show/hide bicluster #57 columns (arrays; conditions).
bicluster 57 arrays
Phaeodactylum tricornutum
56
[+] Show/hide bicluster #57 ratios.
bicluster 57 ratios
Phaeodactylum tricornutum
39x56
GENES GSE12015_Si_free_11v18_1 GSE12015_Si_free_11v18_2 GSE12015_Si_free_22v19_1 GSE17237_highlight_3hr_2 GSE34988_Ammonia_1 GSE34988_Ammonia_3 GSE34988_Ammonia_5 GSE34988_Control_2 GSE34988_Control_3 GSE34988_Control_4 GSE34988_Control_5 GSE34988_Copper_3 GSE34988_Copper_5 GSE34988_Dispersed_oil_1 GSE34988_Dispersed_oil_4 GSE34988_Dispersed_oil_5 GSE34988_Mixture_1 GSE34988_Mixture_2 GSE34988_Mixture_3 GSE34988_Mixture_4 GSE34988_Mixture_5 GSE34988_Oil_3 GSE34988_Salinity_15ppt_1 GSE34988_Salinity_15ppt_5 GSE34988_Silver_1 GSE34988_Silver_2 GSE34988_Silver_3 GSE34988_Simazine_1 GSE34988_Simazine_2 GSE34988_Simazine_3 GSE34988_Simazine_5 GSE42039_light_0.5h_1 GSE42039_light_0.5h_2 GSE42039_light_24h_2 GSE42039_light_6h_1 GSE42039_light_6h_2 GSE42039_light_6h_3 GSE42514_dark_8hr_light_3hr_2 GSE42514_light_16hr_dark_4hr_1 GSE55959_BlueLight_0.5h_rep1 GSE55959_BlueLight_0.5h_rep3 GSE55959_BlueLight_24h_rep2 GSE55959_BlueLight_24h_rep3 GSE55959_BlueLight_6h_rep1 GSE55959_BlueLight_6h_rep2 GSE55959_BlueLight_6h_rep3 GSE55959_GreenLight_0.5h_rep2 GSE55959_GreenLight_24h_rep1 GSE55959_GreenLight_24h_rep3 GSE55959_GreenLight_6h_rep1 GSE55959_GreenLight_6h_rep2 GSE55959_GreenLight_6h_rep3 GSE55959_RedLight_24h_rep2 GSE55959_RedLight_6h_rep1 GSE55959_RedLight_6h_rep2 GSE55959_RedLight_6h_rep3
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54296 -1.38228223661743 -0.31810666693378 0.0293374414491421 0.930296192359821 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -0.325462710831977 -0.58307032185905 0.0482763122872065 0.136582228511908 0.146521213196646 0.317345470831694 1.13693188041708 0.018524644607962 -1.2022272449136 -1.14410453027029 -0.573520866616218 -0.578289806683332 0.14982309374442 0.154765558785873 0.114874143806914 -1.10005477409963 -0.604727402093693 -0.517176486945995 0.434966760689787 0.586018344401174 0.525617898869318 -0.683718290379752 0.978969046999396 0.805919843531007 1.05229848678537
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9444 -1.18870569462976 -1.7590671688658 -0.841663321963766 0.930968518460969 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -0.329909727506808 -0.311993503440905 0.555859394407654 0.398491169292038 0.245269870481373 0.504202530496593 -0.308696636376474 0.723524529296064 -1.17010384376582 -1.14290090335597 -0.543742781718665 -0.534525102337319 0.491622169878358 0.467900554569607 0.529467335416631 -0.114219658530944 -0.634715444185326 -0.574742936457182 0.785204626545863 0.720465529453058 0.930412473478248 -0.460702528124336 1.01504413395415 1.17820383823868 1.32071137270856
9697 -0.0832607496065556 0.363761418347164 -0.0544487739376635 0.339445857062963 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -0.213311199525564 -0.808341409099627 0.964626661273021 0.761800973635366 -0.0196015189662029 0.716151936613019 0.140036607806419 0.554571684349411 -1.19951923211305 -2.25049636624826 0.0685443191638809 -0.034276519395656 0.140312341376984 1.44936512507898 0.170363554917243 -0.492657993330854 -0.00979492137709518 0 0.478359087331912 0.605588051275288 0.0622025574983638 0.186002382531069 -0.353112996202251 0.0630250629704582 -0.0116472980669425
[+] Show/hide bicluster #57 motif PSSM #1. bicluster 57 motif PSSM #1 Phaeodactylum tricornutum 24x4
POSITION A C G T
1 0 0 0 1
2 0 0 0.384615 0.615385
3 0 0.461538 0 0.538462
4 0.153846 0.461538 0 0.384615
5 0 0.076923 0.846154 0.076923
6 0.153846 0 0 0.846154
7 0.076923 0.153846 0.076923 0.692308
8 0.230769 0 0.692308 0.076923
9 0 0.076923 0.307692 0.615385
10 0.076923 0.153846 0.692308 0.076923
11 0 0.076923 0.538462 0.384615
12 0 0.153846 0 0.846154
13 0 0.461538 0.076923 0.461538
14 0 0.230769 0.538462 0.230769
15 0 0.230769 0 0.769231
16 0.076923 0 0.230769 0.692308
17 0.076923 0.076923 0.615385 0.230769
18 0 0 0.230769 0.769231
19 0 0.846154 0 0.153846
20 0.307692 0.153846 0.538462 0
21 0 0.384615 0 0.615385
22 0 0.153846 0.153846 0.692308
23 0 0.153846 0.846154 0
24 0 0.230769 0 0.769231 [+] Show/hide bicluster #57 motif PSSM #2. bicluster 57 motif PSSM #2 Phaeodactylum tricornutum 15x4
POSITION A C G T
1 0.470588 0.235294 0 0.294118
2 0.882353 0 0 0.117647
3 0 0.588235 0.235294 0.176471
4 0.117647 0 0 0.882353
5 0 0.588235 0.411765 0
6 0.941176 0.058824 0 0
7 0 0.764706 0.117647 0.117647
8 0.764706 0 0.235294 0
9 0 0 1 0
10 0.176471 0.117647 0.058824 0.647059
11 0 0.647059 0.352941 0
12 1 0 0 0
13 0.941176 0.058824 0 0
14 0.235294 0 0.117647 0.647059
15 0 0.411765 0.352941 0.235294 |