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[+] Show/hide bicluster #61 rows and columns.
bicluster 61
Phaeodactylum tricornutum
46x64
[+] Show/hide bicluster #61 rows (genes).
bicluster 61 genes
Phaeodactylum tricornutum
46
[+] Show/hide bicluster #61 rows (short gene names).
bicluster 61 short names
Phaeodactylum tricornutum
46
short_name
[+] Show/hide bicluster #61 rows (long gene names).
bicluster 61 long names
Phaeodactylum tricornutum
46
long_name
[+] Show/hide bicluster #61 rows (NCBI RefSeq gene IDs).
bicluster 61 NCBI RefSeq IDs
Phaeodactylum tricornutum
0
[+] Show/hide bicluster #61 gene upstream sequences.
bicluster 61 upstream sequences
Phaeodactylum tricornutum
46
upstream
[+] Show/hide bicluster #61 columns (arrays; conditions).
bicluster 61 arrays
Phaeodactylum tricornutum
64
[+] Show/hide bicluster #61 ratios.
bicluster 61 ratios
Phaeodactylum tricornutum
46x64
GENES GSE12015_Si_free_11v18_1 GSE12015_Si_free_11v18_2 GSE12015_Si_free_22v19_1 GSE12015_Si_free_22v19_2 GSE12015_Si_free_23v20_1 GSE12015_Si_free_23v20_2 GSE17237_highlight_12hr_1 GSE17237_highlight_12hr_2 GSE17237_highlight_24hr_1 GSE17237_highlight_24hr_3 GSE17237_highlight_3hr_1 GSE17237_highlight_48hr_2 GSE17237_highlight_48hr_3 GSE17237_highlight_6hr_1 GSE17237_highlight_6hr_3 GSE31131_Cadmium_0.12mg_1 GSE31131_Cadmium_0.12mg_2 GSE31131_Cadmium_0.12mg_3 GSE31131_Cadmium_1.2mg_1 GSE31131_Cadmium_1.2mg_3 GSE34988_Cadmium_3 GSE34988_Control_2 GSE34988_Control_3 GSE34988_Control_5 GSE34988_Control_6 GSE34988_Dispersant_1 GSE34988_Dispersant_3 GSE34988_Dispersant_4 GSE34988_Dispersant_5 GSE34988_Dispersed_oil_4 GSE34988_Mixture_1 GSE34988_Mixture_5 GSE34988_Oil_1 GSE34988_Oil_2 GSE34988_Oil_4 GSE34988_Simazine_4 GSE42039_light_0.5h_1 GSE42039_light_24h_3 GSE42039_light_6h_1 GSE42039_light_6h_2 GSE42514_dark_8hr_light_3hr_1 GSE42514_dark_8hr_light_3hr_2 GSE42514_light_0.5hr_1 GSE42514_light_0.5hr_2 GSE42514_light_10.5hr_1 GSE42514_light_16hr_dark_30min_2 GSE42514_light_16hr_dark_4hr_2 GSE42514_light_16hr_dark_7.5hr_1 GSE42514_light_16hr_dark_7.5hr_2 GSE42514_light_6hr_2 GSE55959_BlueLight_0.5h_rep2 GSE55959_BlueLight_0.5h_rep3 GSE55959_BlueLight_24h_rep1 GSE55959_BlueLight_24h_rep2 GSE55959_BlueLight_24h_rep3 GSE55959_BlueLight_6h_rep1 GSE55959_BlueLight_6h_rep2 GSE55959_BlueLight_6h_rep3 GSE55959_GreenLight_6h_rep2 GSE55959_GreenLight_6h_rep3 GSE55959_RedLight_24h_rep1 GSE55959_RedLight_24h_rep2 GSE55959_RedLight_6h_rep1 GSE55959_RedLight_6h_rep3
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12031 0.544263679644118 0.413938251189882 -0.0382320958635209 -0.165228977029142 0.0888928063516628 0.0380684496755018 -0.655215461912699 -1.10643077193637 -0.716834553487938 -0.584535040449454 -3.77137582930423 0.0198625762172729 -0.204293320092527 0.252238704119457 -1.13879449326567 0.073106530730158 0.279417572941495 -0.0509253829276049 0.0381375810422653 0.24516554113115 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -1.76356234768173 -0.117275511390536 0.160244805075822 -0.0219418462429776 -0.317825144132375 -0.360299038144441 -2.42400333006777 -2.65444914237781 0.194755951113823 0.367088725713544 0.122904560342571 0.18942486428874 -0.0185523882617691 -0.417528517093532 -1.89273687793858 -1.96963021063679 0.113172877074583 0.0227383746043526 0.00875791027494926 -0.557969293604217 -0.566409352353077 -0.563352647673907 -0.00935881174753802 0.249406182164302 0.5133319712899 0.396512017147548 0.447858646904258 0.648389264368229
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13244 0.661602016830912 0.565129632296133 0.56539273879941 0.526277571978945 0.587932195913444 0.693437903727389 -1.53914092854497 -1.70617146108513 -0.783832319371865 -1.19201224046858 -2.59306577169865 -0.180986035652488 -0.412559224511448 0.0018519356045344 -1.17787377400417 0.545216855106477 0.585309901097454 0.399054176362867 0.100314720836601 0.131548751606832 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -1.65364096844627 -0.56097910980026 1.26318509889341 1.21387172293729 -0.718996757286969 -1.092719266347 -1.431434830976 -1.26377950759796 0.413999027639193 0.901682255083616 0.764094281053858 0.551280766845476 0.491100925652384 -0.281095337104816 -1.55255840390124 -1.87599902325548 -0.303840254638468 -0.120931706571436 -0.106184245953406 0.368151554828845 0.324279155377814 0.360908215685325 0.998695162935676 1.22777730055971 0.902252523112361 0.662386583777834 1.3380421542753 1.42052269608197
16130 0.193830841507673 0.689149303697785 -0.00352860776807705 0.237603170724474 0.527882827635888 0.783605382534039 0.33467023060173 -0.634618084090301 -0.748072889677847 -0.13946088837625 -1.37928523569612 -0.245781572237058 -0.10842861076834 0.973746237167019 -0.328710937712888 0.359297925303182 0.441052349310561 0.245889195851654 0.110225692703584 0.155818029293083 0 0.0224293868933367 -0.0415336740722455 -0.0444938354307015 -0.0481877592552393 0.206556399612 0.0155466872821351 0.0410840631369849 0.392781205048056 0.356037137635493 -1.15260656835389 -1.40185066494083 0.517308758865912 0.334400226492494 0.489057268218941 0.802634831828913 -3.23245827736071 -0.507643736600714 1.65919341922381 1.21736435690482 -0.978616211302674 -0.957980031742361 -1.55604040373842 -2.73522896255918 -0.287000190219892 -0.283345216018981 -0.272820142113808 -0.0146510089067123 0.0214166341758632 -1.4109954171222 -3.4866580523678 -3.30259363198795 0.549380789638781 -0.213672253805259 -0.359197611138584 0.483236818362309 0.826841923486514 0.432686309979045 0.946092897638815 0.558822445771936 -0.123392145693778 0.399569787505824 -0.316831608720303 -0.384442766008463
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52286 0.193128123123948 0.104447514408975 0.226469818444242 0.136820778744862 -0.0410938278190308 0.195064985092762 -0.634299309953292 -1.67127445596366 -1.21445172589058 -1.89436221753163 -2.40910403783641 -0.513400385859937 -0.864563145115716 -0.140401352536229 -0.877068356070079 0.0979645607047882 0.063843970178464 0.0168224954670053 0.170221963397055 0.164221841712237 0.253547301134733 0.0721606608640382 0.0748891255135649 0.0824439187092842 0.0619106816277511 0.55627905928376 0.659083243339756 0.554246162164642 0.675489515654963 0.649354551687145 -1.33803704691382 -1.42709047388833 0.606556470905382 0.652557567994429 0.519104679364012 -0.0504960390667704 -2.4115771661257 -1.06942877654262 1.43901859837619 1.40316046674312 -0.409454201564879 -0.551139767160883 -1.24071498226595 -1.5303686784304 0.821851956738879 0.400024785046325 0.244831126451254 0.166271315612938 -0.0232295937346563 0.0686510949194016 -2.57442187497322 -2.59815789383197 -0.605739783538599 -0.781309804265908 -0.803549527882697 0.90401682108867 1.00505427488336 0.895777381420845 1.30974858925651 1.45600926836948 -0.509698486382392 -0.470184954028483 0.671951660007965 0.763977818181757
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9137 0.462591052063546 0.526401930350405 0.337680215155608 0.321206164878935 0.516600913097195 0.525359268940489 -0.653623864353577 -1.4006594847161 -1.04472824453589 -1.02895903337232 -2.36583863993843 -0.293690889682112 -0.726309876561641 0.409457026614226 -0.912721054072065 0.389112617183945 0.482128441562552 0.464190494666357 0.294023981922425 0.377199167914244 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -2.90111960002268 -0.150757220690085 1.0518427485725 1.06751225612587 -0.355652227391119 -0.377946097097478 -0.806702903130519 -1.39380522293285 0.187775715191008 0.323900656715483 0.318552838350481 0.406962661043357 0.541575058665853 -0.379102864521084 -2.61409958721785 -2.3952047323549 -0.0114553820507862 0.0273057323907607 -0.0495084171228361 0.277198974318461 0.0686474388643813 0.0743923571571634 0.480516822522422 0.489016471694304 0.172917569543003 0.144213079509329 0.225465560592668 0.143130960135968
[+] Show/hide bicluster #61 motif PSSM #1. bicluster 61 motif PSSM #1 Phaeodactylum tricornutum 11x4
POSITION A C G T
1 0 0.631579 0.052632 0.315789
2 0 0 0 1
3 0 0.947368 0 0.052632
4 0.894737 0.052632 0 0.052632
5 0 0.894737 0.052632 0.052632
6 0.421053 0.052632 0 0.526316
7 0 0.052632 0.947368 0
8 0 0 0 1
9 0 1 0 0
10 1 0 0 0
11 0.315789 0.052632 0.578947 0.052632 [+] Show/hide bicluster #61 motif PSSM #2. bicluster 61 motif PSSM #2 Phaeodactylum tricornutum 18x4
POSITION A C G T
1 0.5 0.5 0 0
2 0 0 1 0
3 0 0 0.125 0.875
4 0 0.75 0 0.25
5 0.625 0 0 0.375
6 0 0.5 0.5 0
7 0 0 0.125 0.875
8 0 0.125 0.875 0
9 0.125 0.25 0 0.625
10 0 0 0.25 0.75
11 0 0.125 0.75 0.125
12 0 0 0 1
13 0 0 0.875 0.125
14 0 0 0 1
15 0 0.625 0.375 0
16 0 0.5 0 0.5
17 0 0 0.625 0.375
18 0 0 0 1 |