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[+] Show/hide bicluster #76 rows and columns.
bicluster 76
Phaeodactylum tricornutum
23x65
[+] Show/hide bicluster #76 rows (genes).
bicluster 76 genes
Phaeodactylum tricornutum
23
[+] Show/hide bicluster #76 rows (short gene names).
bicluster 76 short names
Phaeodactylum tricornutum
23
short_name
[+] Show/hide bicluster #76 rows (long gene names).
bicluster 76 long names
Phaeodactylum tricornutum
23
long_name
[+] Show/hide bicluster #76 rows (NCBI RefSeq gene IDs).
bicluster 76 NCBI RefSeq IDs
Phaeodactylum tricornutum
0
[+] Show/hide bicluster #76 gene upstream sequences.
bicluster 76 upstream sequences
Phaeodactylum tricornutum
23
upstream
[+] Show/hide bicluster #76 columns (arrays; conditions).
bicluster 76 arrays
Phaeodactylum tricornutum
65
[+] Show/hide bicluster #76 ratios.
bicluster 76 ratios
Phaeodactylum tricornutum
23x65
GENES GSE12015_Si_free_11v18_2 GSE12015_Si_free_22v19_1 GSE17237_highlight_12hr_1 GSE17237_highlight_12hr_3 GSE17237_highlight_30min_1 GSE17237_highlight_30min_3 GSE17237_highlight_3hr_1 GSE17237_highlight_3hr_2 GSE17237_highlight_3hr_3 GSE17237_highlight_48hr_1 GSE17237_highlight_6hr_1 GSE17237_highlight_6hr_2 GSE34988_Ammonia_1 GSE34988_Ammonia_2 GSE34988_Ammonia_3 GSE34988_Ammonia_4 GSE34988_Ammonia_5 GSE34988_Cadmium_1 GSE34988_Control_2 GSE34988_Control_3 GSE34988_Control_6 GSE34988_Dispersant_5 GSE34988_Dispersed_oil_1 GSE34988_Dispersed_oil_2 GSE34988_Dispersed_oil_3 GSE34988_Dispersed_oil_5 GSE34988_Mixture_1 GSE34988_Mixture_3 GSE34988_Mixture_5 GSE34988_Oil_1 GSE34988_Oil_3 GSE34988_Oil_4 GSE34988_Oil_5 GSE34988_Salinity_15ppt_1 GSE34988_Salinity_15ppt_5 GSE34988_Silver_2 GSE34988_Silver_3 GSE34988_Silver_4 GSE34988_Silver_5 GSE34988_Simazine_2 GSE34988_Simazine_3 GSE34988_Simazine_4 GSE42039_light_24h_1 GSE42039_light_24h_2 GSE42039_light_24h_3 GSE42039_light_6h_1 GSE42039_light_6h_2 GSE42039_light_6h_3 GSE42514_light_0.5hr_2 GSE55959_BlueLight_24h_rep1 GSE55959_BlueLight_24h_rep2 GSE55959_BlueLight_24h_rep3 GSE55959_BlueLight_6h_rep1 GSE55959_BlueLight_6h_rep2 GSE55959_BlueLight_6h_rep3 GSE55959_GreenLight_24h_rep1 GSE55959_GreenLight_24h_rep2 GSE55959_GreenLight_6h_rep1 GSE55959_GreenLight_6h_rep2 GSE55959_GreenLight_6h_rep3 GSE55959_RedLight_24h_rep2 GSE55959_RedLight_24h_rep3 GSE55959_RedLight_6h_rep1 GSE55959_RedLight_6h_rep2 GSE55959_RedLight_6h_rep3
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48986 0.13286318387266 -0.902398234722231 0.0671286030660422 0.419729325581968 0.207240007414761 -0.944364909823901 -1.68159062681041 0.789923930030427 0.839736760342872 0 -0.0898501229852368 -1.32692842000561 -3.64358354702961 -3.98692288625044 -1.74823490274133 -1.44680366187635 -3.52889983872938 -0.253717961035272 -0.191025008173222 -1.1204369782096 -0.667112620030343 0.545703745092345 0.217413067362058 -0.314932040527403 0.559059312665167 0.0730183992575808 -1.91584337877537 -1.61540848142576 -3.57563278370333 -0.117642251127586 1.06379444697175 0.825891164396763 -0.847350677007411 -0.090617669555457 0.106703921628971 0.0943807648556605 0.36217567391027 0.318924117020085 0.322408668595759 0.166882089622302 0.151866696942287 0.0821820967035718 0.394033631376217 0.216405038925415 -0.722984078862558 0.817228810921321 0.433255570473625 0.726239882550018 -0.442956377029295 0.157142243714339 -0.814149830327894 -0.911565051215205 0.204423806945681 0.95493924858271 0.535294646455223 -0.743055994937098 0.469173291170692 0.817228810921321 0.866592096754406 0.366039736254417 0.563553297431069 -0.642581316487369 0.132545017733464 0.368853230415805 0.476187749123322
49418 -0.665442081423292 -0.783933812681669 -0.335696520721406 0.615654300200507 0.299871868095747 -1.28583880471653 -1.03799031966579 1.07683514074474 0.759615848775885 -0.039077468941091 0.280513625954117 -1.19569061050335 -4.64162273211648 -4.64963627672565 -1.00646872219508 -1.46569033542407 -3.12508367414252 0.0759904043765521 0.140309704087795 -0.10368945700665 -0.116466621154962 0.789308284273577 -0.576402078174249 -0.0862902217305247 -0.365447765121865 -0.66332584075433 -2.66007822756825 -1.49549006105099 -2.58353178185487 -0.293141250766383 -1.52743966364579 -0.115750061109038 -0.109234405510463 0.261569850961038 0.533449856604824 0.575172369821845 0.740067844685436 0.421430726324929 0.576069580550408 0.480415516485112 -0.143168902067939 0.376687776209481 0.40389227250567 0.253438533307908 -0.534551017322315 1.34021466975032 1.32307478076503 1.8580247133439 -0.178816299800724 0.204060066055893 -0.742873314615175 -0.740896983467061 0.427556229089592 0.768074469872292 0.569488907305674 -0.542830357524698 0.503979650395871 0.969765253505671 0.871456748224871 0.908354006783189 0.256452909832099 -0.838710409176503 0.349019012985613 0.545936979988183 0.805757693005823
49936 0.536623001210701 0.57887220325569 0.464486241820587 0.99330470587385 0.746294853349299 -0.457983264555612 -1.18157698392491 0.939324380215354 1.00193040590557 1.35432306503351 0.688092824430622 -0.66397064313516 -3.72005812778301 -3.42886676199304 -1.13412022565946 -1.72561398693727 -1.87555640499493 -0.89223067617463 0.584665661544811 0.458716439867666 0.426172908954593 -0.66784216163233 -1.66591951031792 -0.335654314807445 -0.8260683185407 -1.0707180062505 -2.99452652115646 -2.8173875196758 -2.67219073787627 -0.956723761401874 -0.80102247685734 -0.546389645845032 -0.862952515314839 0.326410454721941 -0.315326229198124 1.2521166360081 1.90358678545899 1.9528637240614 1.81036510069298 0.0568887904460246 0.176561006355069 0.05639290920253 0.252956113567703 0.290748535922456 0.155086232282293 -0.00414844459949775 0 -0.112205438596168 -0.536586386621543 0.313890782036953 0.197899282165916 0.217070327812865 0.210756552203827 0.315580902239509 0.167993069574675 0.115546582451346 0.0385284094263059 -0.33909233605584 -0.319656847235745 -0.573488838185178 0.706558306506627 0.557590809140057 0.374278848083459 0.694374797812951 0.283004799595883
50441 0.127039510899095 -0.734300824441887 1.63117989057039 1.23823472770792 1.50791651019893 0.618220964477185 -1.15832420555097 1.1822239686897 1.06385822052138 1.14591719714514 1.26829181800484 -1.41522297889399 -2.45423906628687 -2.43170579800149 -1.61921943843577 -1.70503854854627 -2.85303245583454 0.358010030891222 -0.0517859555850371 -0.192396815404264 -0.0546422962874211 -0.514905394872363 -1.50072326953654 0.314748943084402 -0.197567143608331 -1.12507633560804 -1.30061371399516 -1.49460457631311 -1.9940428704924 0.275810138610407 -1.23369174899985 0.443096784254252 0.0367870231471199 0.121527765413419 -0.258400444105843 0.0914762345908963 0 0.197898908079185 0.413977732347565 0.90923019614375 1.44986098091133 0.985599674749154 1.10742255129182 1.03889804745917 0.0606892393503349 0.432892409369061 0.833493900763118 0.355846940607266 0.0411831053829508 0.561546471397493 -0.15134963333847 -0.23045731859445 -0.230084014799666 0.319011859378157 0.306162180651132 -0.300221033023719 0.403903409116496 0.00937542319175142 0.295253744238456 -0.0704196788996432 0.594025937502204 -0.236998417428089 0.178242929725565 0.374603058597645 0.124527815724229
7666 -0.0391202845431153 -0.622076951062266 0.0273501767427465 0.284262721450587 -0.211709918325386 -1.4330376379397 -1.09963237201422 0.040512170444944 0.494768469454243 -0.556515863886738 0.121982518371783 -1.60329161611228 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.813283570617206 0.825089296330957 -0.671739096319973 1.17091576261035 0.861263914199945 1.06987335296657 -0.532226991287273 0.432150625698303 -0.840680728544345 -1.07976067784295 0.163960829292429 0.828300301135141 0.761168836063758 -0.317927018702911 1.35194539919427 0 0.960918430156832 0.359593943764955 1.40019498074108 -0.319547434700096 0.404853019072277 0.4919972962421 0.825089296330957
8866 -1.1217031632974 -0.254547835968706 0.755505811662381 0.330181183892135 0.468165095575297 -0.430648535019859 -1.75942219041837 1.04141659337058 -0.250365832763051 0.447737008650328 0.21035125617772 -0.302728063954398 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.897305055935572 0.829258916739034 0.0880640843336093 0 0.0039091538787322 -0.0409304886959419 -0.114500044388333 -0.0284560937646311 -0.772428511814807 -0.584911990786076 0.442809213593642 1.1377783519053 1.0526117556096 -0.679195612551673 0.340681037473964 0.694133595146084 0.870160152631483 0.84491993325435 0.505347908404276 -0.154975798038462 0.274561217013344 0.605641852539769 0.836222029128495
[+] Show/hide bicluster #76 motif PSSM #1. bicluster 76 motif PSSM #1 Phaeodactylum tricornutum 13x4
POSITION A C G T
1 0.076923 0.692308 0 0.230769
2 0.846154 0 0 0.153846
3 0.076923 0.384615 0.461538 0.076923
4 0 0 0 1
5 0 0.076923 0 0.923077
6 1 0 0 0
7 0 0.923077 0 0.076923
8 0.384615 0 0 0.615385
9 0 0 0.846154 0.153846
10 0 0 0.076923 0.923077
11 0 0.230769 0.076923 0.692308
12 1 0 0 0
13 0.692308 0 0.307692 0 [+] Show/hide bicluster #76 motif PSSM #2. bicluster 76 motif PSSM #2 Phaeodactylum tricornutum 9x4
POSITION A C G T
1 0 0.178571 0 0.821429
2 0 0.75 0.25 0
3 1 0 0 0
4 0.107143 0.285714 0 0.607143
5 0.607143 0 0.321429 0.071429
6 0 0 1 0
7 0 0.107143 0 0.892857
8 0 1 0 0
9 0.821429 0 0.178571 0 |