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[+] Show/hide bicluster #86 rows and columns.
bicluster 86
Phaeodactylum tricornutum
15x64
[+] Show/hide bicluster #86 rows (genes).
bicluster 86 genes
Phaeodactylum tricornutum
15
[+] Show/hide bicluster #86 rows (short gene names).
bicluster 86 short names
Phaeodactylum tricornutum
15
short_name
[+] Show/hide bicluster #86 rows (long gene names).
bicluster 86 long names
Phaeodactylum tricornutum
15
long_name
[+] Show/hide bicluster #86 rows (NCBI RefSeq gene IDs).
bicluster 86 NCBI RefSeq IDs
Phaeodactylum tricornutum
0
[+] Show/hide bicluster #86 gene upstream sequences.
bicluster 86 upstream sequences
Phaeodactylum tricornutum
15
upstream
[+] Show/hide bicluster #86 columns (arrays; conditions).
bicluster 86 arrays
Phaeodactylum tricornutum
64
[+] Show/hide bicluster #86 ratios.
bicluster 86 ratios
Phaeodactylum tricornutum
15x64
GENES GSE12015_Si_free_11v18_1 GSE12015_Si_free_11v18_2 GSE12015_Si_free_22v19_1 GSE12015_Si_free_23v20_1 GSE17237_highlight_12hr_1 GSE17237_highlight_12hr_2 GSE17237_highlight_24hr_3 GSE17237_highlight_24hr_3.1 GSE17237_highlight_30min_1 GSE17237_highlight_30min_2 GSE17237_highlight_3hr_1 GSE31131_Cadmium_1.2mg_1 GSE34988_Ammonia_1 GSE34988_Ammonia_4 GSE34988_Ammonia_5 GSE34988_Cadmium_1 GSE34988_Cadmium_4 GSE34988_Cadmium_5 GSE34988_Control_2 GSE34988_Control_6 GSE34988_Copper_1 GSE34988_Dispersant_1 GSE34988_Dispersed_oil_5 GSE34988_Mixture_2 GSE34988_Mixture_3 GSE34988_Salinity_15ppt_1 GSE34988_Salinity_15ppt_2 GSE34988_Salinity_15ppt_3 GSE34988_Salinity_15ppt_4 GSE34988_Salinity_15ppt_5 GSE34988_Silver_1 GSE34988_Silver_3 GSE34988_Simazine_1 GSE34988_Simazine_2 GSE34988_Simazine_3 GSE34988_Simazine_4 GSE42039_Dark_treated_48h_1 GSE42039_Dark_treated_48h_2 GSE42039_Dark_treated_48h_3 GSE42039_light_24h_2 GSE42039_light_6h_1 GSE42514_dark_8hr_light_3hr_1 GSE42514_dark_8hr_light_3hr_2 GSE42514_light_0.5hr_2 GSE42514_light_10.5hr_1 GSE42514_light_10.5hr_2 GSE42514_light_15.5hr_1 GSE42514_light_15.5hr_2 GSE42514_light_16hr_dark_30min_1 GSE42514_light_16hr_dark_30min_2 GSE42514_light_16hr_dark_4hr_2 GSE42514_light_16hr_dark_7.5hr_1 GSE42514_light_6hr_1 GSE42514_light_6hr_2 GSE55959_BlueLight_24h_rep1 GSE55959_BlueLight_24h_rep3 GSE55959_BlueLight_6h_rep1 GSE55959_GreenLight_0.5h_rep1 GSE55959_GreenLight_24h_rep1 GSE55959_GreenLight_24h_rep2 GSE55959_GreenLight_6h_rep1 GSE55959_RedLight_24h_rep1 GSE55959_RedLight_24h_rep2 GSE55959_RedLight_6h_rep1
11823 -0.315326821717057 -0.406525481014642 -0.0357655213203593 -0.0794438149085595 0.539956853179774 0.416343238038724 0.384200260458574 0.482622015343985 0.481754515901886 -0.235958711337887 -0.343390125347476 0.141605760297334 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -2.04793305076099 -2.18180670356494 -2.1134458775469 0.151334912489818 -0.0211804475982693 0.24211076115595 0.588265548402513 0.243187694987605 0.89005081164566 0.982285726544092 0.818842523217919 1.11120868328395 0.739762380656665 1.11212063750341 0.878173793356021 -0.121662569591454 0.697908673682628 0.729548417553214 -0.0385012215323061 -0.0022031930680009 -0.0227715906334617 -2.47164955325893 -0.0242211612180949 -0.104511167886113 -0.0122613246513518 -0.0425641847859265 -0.0815041506218922 0.059122187011958
11841 -0.228332316323475 -0.165291151373469 0.0914676014188622 -0.18494366028501 0.59144018949787 0.582989610665908 0.338400099755424 0.420116252719162 0.521487466868325 -0.0985900256729248 -0.150929506224737 0.0603809055042439 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -2.14298083301277 -2.30843101455755 -2.22231519418212 0.160522661706506 -0.0473223331535962 0.322599910128448 0.755547345103071 0.317895469859772 1.07522118707424 1.20044128370918 0.934722626531665 1.39300308083727 0.961294769061725 1.35603569278305 1.0346536138894 -0.0896917964478521 0.879758782504018 0.897638030503857 -0.0556950626712204 -0.0370715385300828 -0.0168781882400622 -2.27727434586658 -0.0797349204488182 -0.083390266994229 -0.0452057895964507 -0.066948616826106 -0.217083886225957 0.125937942342454
30352 -0.774217044169164 -0.822577411373659 -0.0923986722574837 0.0882304395348886 0.826365401141279 0.800515842785401 -0.0738534135196354 0.140845262939945 0.547638854616381 -0.304034944165257 -0.254405902392541 -0.00362411143123808 -1.10055044277004 -2.07017279054791 -1.31962127325893 0.015809159524949 0.3022361536982 -0.298356453204603 0.0298276913107042 -0.0281026141233237 0.444239124219685 -0.100014483924748 0.113402077552868 -2.19248507761346 -1.91737921525606 0.424051051246766 0.666765296664776 0.35452542390403 0.491932564277027 0.389901252333969 0.280087005029467 -0.0730235204137689 0.537968223507733 0.436072879563325 0.263561099370198 0.44387123371717 -2.95641735213098 -2.89566560171304 -2.93363640768826 0.094481813204005 -0.0795622986976681 0.326067135747468 0.45234196771757 0.226096557545512 0.833829399749079 1.21628027885892 1.42934908570348 1.3281202449683 1.31442773571276 1.23207984051283 0.773412061605897 -0.142309929644957 0.68184827901428 0.84920351819159 -0.195036237330964 -0.119318638469835 -0.063966053653698 -2.38957469147767 -0.199514638635141 -0.219501693093088 -0.15444176570939 -0.209723972832817 -0.153463953613494 -0.0205072604657478
32786 -0.280841162480026 -0.495643180270323 -0.300448431133909 -0.285523495292893 0.461633425198369 0.948356068179932 0.453898796683113 0.157726613979203 0.387181407015767 -0.386638472386767 -0.262231816006885 0.0150500802551131 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -2.22604484753954 -2.12614742538027 -2.15003578770086 0.152951829939172 -0.195623624881766 0.293657558985394 0.68751474908008 0.649477298771745 0.66860152225498 1.28630012763792 1.21040959700381 1.44192361691902 0.979157486228095 1.25963329301282 0.694920862261417 -0.278187941764661 0.45732327816116 1.06370351123768 -0.117475985967064 -0.100301211695115 -0.168067286599803 -2.38132330223295 -0.213161691014625 -0.147352564833335 0.0794148407285655 -0.304044732299508 -0.221390193117046 0.378097407452847
35642 -0.417476316517695 -0.279515433423746 -0.02829254656213 -0.0898633243112197 0.644319684690857 0.619033324877741 0.371000121860549 0.548442163557561 0.451470834911244 -0.116532821366606 -0.199406382534615 -0.0750192978361243 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -2.39482334043436 -2.26080615661592 -2.25894607474671 0.121345342621415 -0.242930592303807 0.574242589463172 0.860053208211693 0.511244270435556 0.904492754848869 1.29950706001883 1.37102962961721 1.40743358100787 1.14906314816636 1.40198514788079 0.811272724822648 -0.188064079027556 1.07394842477667 1.09780923192579 -0.211511283678525 -0.0205218748834844 -0.0595363844108758 -2.18803080790081 0.00307927617709509 -0.241606340793068 0.148097237789698 -0.0390692579390705 -0.173064611277352 0.129363975734587
42993 -0.382623387138727 -0.0475844285811126 0.163883806172758 -0.041156822661542 0.501103330038586 0.44881796968584 0.0485580938623436 0.322407850967126 0.516712771014263 -0.0164426779007933 -0.208475439255362 -0.0980025694142238 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -2.19000627929073 -2.20211053768796 -2.24434684776032 0.241231266667435 -0.178931937333209 0.29312412103133 0.472245492962528 0.392164986291381 1.08438584227513 1.15030924696662 1.44903738945666 1.3680183473809 1.17906187095532 1.29327130723294 0.9524697254913 -0.0560419832553415 1.01451596152058 0.940329015367724 -0.0819867914765219 0.0523384519558921 0.0658691276296802 -2.2550343366175 -0.05246644232876 -0.148651351043386 -0.118040043924411 -0.00448204241047577 -0.0802684729355243 0.298191168583785
43196 -0.0145658774722346 -0.579993667238481 -0.0032040385703356 -0.12990813170393 0.113545516535002 0.275814516156832 0.0413375042254966 0.221979772714342 0.00162670190071332 0.31299437091933 0 -0.11017771076946 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -1.89812566582433 -1.930580608233 -1.88853868678942 0.564707655336523 -0.0151423297253454 0.741110417512936 0.719754428115662 0.744872088935124 0.474528809573799 1.16024979648546 1.14320352975008 1.71212676973567 0.858753423875615 1.51024404975918 1.00124861363045 -0.645021798475377 0.566477307975814 1.20580104493988 0.0141511457503604 -0.0681872065009083 0.207282412801183 -2.18647629113104 -0.408870506370477 -0.142596032908546 -0.0272006481210128 -0.388694411665256 -0.22318904407459 -0.206498516389408
45915 -0.224964372430947 -0.409268072567273 -0.180853026349427 -0.0213117524773899 0.468248050678741 0.373460696117061 0.257758346711789 0.148571763517893 0.44353032949995 -0.355814760650531 -0.309522644617048 0.390772740476276 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -2.70207613347252 -2.73446633920125 -2.78642356492237 0.121827112480133 -0.0837926599142208 0.586176226629384 0.686434734394686 0.400453541101991 0.497061041718229 0.843896195717233 0.824626470325695 1.03263575901543 0.610528412677271 0.930952402990658 0.525566005259367 -0.225758918611009 0.440343135086035 0.819875842968784 -0.142813697923998 -0.322100311352474 -0.197183709100024 -2.21382612304926 -0.434764221938632 -0.241298851513885 -0.0435904598409431 -0.373691229282897 -0.404617655963515 0.101296637291708
47179 -0.378444818481226 0.324607583052025 0.205794797290729 -0.50063471184814 0.186017227113099 0.833390334523175 0.0435278469385957 0.187048779981724 0.244563992603226 -0.29613549583884 -0.439349419099639 0.194631921605249 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -2.25463858652321 -2.06080049709532 -2.12448129477896 0.345246586467244 -0.0308543848707215 0.552253638690014 0.769251364739898 0.315153085728336 1.03716791990386 1.31857935414141 1.28712837460019 1.38143953949398 1.04470705460913 1.23850794848864 0.778714033808669 -0.296426138595734 1.18179641467598 1.1231696369999 -0.0730011620560437 -0.207927068673593 -0.120685103675865 -2.05824394992132 -0.263371479863719 0.0160318904406158 0.239256974147597 -0.207927068673593 -0.00634535002197365 0.115774193809116
47761 -0.288265336208959 -0.364257648107483 -0.0648032378673579 0.0688985297141041 0.55111400305658 0.701828214204124 0.163472749926215 0.210968391876392 0.472588018076639 -0.427065293891613 -0.175988930446887 0.155541834645605 -1.21530913179078 -2.43608968254718 -2.02863823948546 -0.148335554112388 0.0882568680178612 -0.24579852371833 -0.0130236323705364 -0.0861897656038064 0.225538359617033 -0.528103234866675 -0.405953393877108 -1.54098001795938 -1.3750892480985 0.441183506560124 0.459867738521682 0.30108649645251 0.445033728564639 0.562078696599704 0.0980950282846939 0.0673140638607243 0.34970185382756 0.391249564115031 0.0903173000944638 0.407208351925961 -2.29616005582519 -2.34031664036536 -2.38393170505874 0.302117182448526 0.199658193446439 1.17446620367958 1.23090689139782 0.728437995520938 1.18098022409903 1.32821416464663 1.11164559111692 1.31148796165035 0.893400831529172 1.19509232800018 0.632815358168225 -0.264974373245201 1.55264864999521 1.30918677097304 0.0151356404056088 -0.233576636509751 0.00953399782267843 -2.72016930411927 -0.41607921455813 -0.15399664688931 0.095622250394877 -0.262071044070533 -0.23673887439278 0.19916901191662
48434 -0.145795835914715 -0.0325505449363155 -0.453278303191509 -0.275167829722317 0.476451200894192 0.854962834854273 -0.00465134904179529 -0.140072648266218 0.276985389167397 -0.390781954160739 -0.442376652078968 -0.166205074273006 -0.911382763507911 -1.76172445164836 -1.52078584911553 -0.116120593933538 0.549167055245389 -0.375730652147708 0.0790756029784765 -0.0199012687214412 0.212595549604489 0.0180296967675892 -0.783920888057636 -1.53955367582274 -2.36039432059521 0.36248986221062 0.403855184669005 0.219481601540595 0.868222689540533 0.221686078812806 0 -0.109318689699311 0.401519235347907 0.239080770529792 0.307877894030166 0.0705507626682914 -2.23450122006708 -2.31693853125415 -2.44060983012231 0.276355091733561 -0.015467023354253 0.660883321479635 0.818977632612421 0.184638856214819 1.21131665625335 1.24269275558526 1.1030141036466 1.26803448812593 0.914102032331939 1.17711490965688 0.679711966808144 -0.371608915991251 1.0750076478839 1.01903275297718 -0.0970638546961569 -0.304073515833748 -0.122528080085262 -2.66372096099587 -0.373528058749356 -0.217645307517685 0.191873146473243 -0.31196425613011 -0.167695223386347 0.00895425946448443
48451 -0.292817191343821 -0.488177723066272 -0.150105248141693 -0.22873544780163 0.444620684506499 0.63027892249595 -0.155662945296737 0.157519519992222 0.336246836103566 -0.304321375230676 -0.501269464391586 -0.142561235007917 -1.34554289398182 -2.29159248399 -1.84774239028977 -0.131126793885912 0.0922513726991704 -0.225764968227014 0 -0.076836192463975 0.042602052770108 -0.0174028457623617 -0.134069245615786 -2.65595068574717 -2.84644767170476 0.554406782490106 0.561238158036998 0.373580314194338 0.451332042559453 0.449156690110224 0.0731919792864011 -0.173712810332099 0.518852374453445 0.354905791309556 0.238647047296334 0.344273306052941 -2.65498016045595 -2.71251870536143 -2.66451750073292 0.245838448296259 -0.141498426800798 0.27811607388042 0.410404510294462 0.0672820584615895 1.03010463495789 1.15008393114803 1.08331755093839 1.06181278293914 1.00806320190485 1.00285740708433 0.597356242626674 -0.32715502664629 1.00005157484807 0.870132126566102 -0.0437851326377425 -0.0993598535526308 0.03439570086216 -2.37673984641629 -0.191890008620285 -0.0656709880841564 0.163883723613361 -0.0843592380107577 -0.0630137224186719 0.139753212910022
50429 -0.46861048843601 -0.448075164825012 -0.272100214646557 -0.288508822507976 0.646272863983808 0.838936449163831 0.271850048716337 0.410741545127984 0.441894318831826 -0.160767319031143 -0.1913089457835 -0.012836350025181 -1.70172307023035 -2.20077614006488 -1.86501244706703 -0.191927930792893 0.0583889586200413 -0.452681564363651 -0.0137856511188896 0 -0.0803028440513809 -0.180682571422209 -0.00941761092758396 -2.71817472127444 -2.59050101384206 0.423249913119626 0.530308857662825 0.310938838488857 0.299744974635419 0.299574010697223 0.342905312108892 -0.0260578940850116 0.478773792723699 0.435680592985267 0.248776448815628 0.402568091099518 -2.68121162298172 -2.7053042089476 -2.71145753015614 0.255325187084264 -0.0184050537252171 0.0348768236590873 0.561592656995282 0.432521428119434 0.653022930864131 0.813674843992456 1.37857054897258 1.29155779077148 1.30019121221848 1.52096973694012 0.749188423429217 0.0150961632602811 0.695859810760327 0.733294102743337 -0.186232621283918 -0.181388306130085 -0.0270540803457497 -2.40598904657214 -0.152637044416828 -0.164094525121993 0.013121825337234 -0.0737176168087121 -0.145059728893513 0.0589903919614381
54381 -0.217606157910334 -0.342524391319188 0.190855232775703 0.0723067676426534 0.39407295802486 0.316590698607443 -0.0408459729467655 0.193276629410547 0.439670767289207 -0.000334246712641666 -0.105900770223584 0.188820445687598 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -2.45801706712317 -2.46573917129835 -2.42178405676939 -0.0471899009728533 -0.449459296915855 0.701772024606367 0.858420468425114 0.360528918553208 1.1887526146982 1.2536785610703 1.03075699539635 1.37328944926328 0.942559085186421 1.27958221878689 0.95954427814925 -0.112265198493702 1.09330198034508 1.01890852678836 -0.245196402048777 0.0259127110080367 -0.219714533346868 -2.1145032707395 0.0644080202399364 -0.345603441709124 -0.0679924568445584 -0.251694528633641 -0.237748660730566 -0.11408501284925
54591 -0.408928273810937 -0.377619201226676 -0.182771876412952 -0.180070078271163 0.914998905163385 0.387646050918763 -0.401426810734911 0 0.217855519930594 -0.641945649196041 -0.185836033364346 0.0528265108440732 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -2.48298116902761 -2.47739476500254 -2.47339628503775 0.117923631197819 0.213186944331603 0.56949053731873 0.638812304648505 0.766649376530048 1.17016812567858 1.08907318585431 1.34811507427935 1.35173090467265 1.33939145684499 1.28772729471554 0.875707350386465 -0.304746126800891 0.525099293451856 0.929798623250495 -0.143716820072452 -0.24723678105261 0.00318755175907843 -1.7932695179164 -0.144900140495343 -0.208203331844239 0.100098775463015 0.14561062350088 0.0918501605378996 -0.0939342419977167
[+] Show/hide bicluster #86 motif PSSM #1. bicluster 86 motif PSSM #1 Phaeodactylum tricornutum 11x4
POSITION A C G T
1 0.272727 0.181818 0.545455 0
2 0.636364 0.090909 0 0.272727
3 0 0 0 1
4 0.090909 0.272727 0.636364 0
5 0 0.181818 0.818182 0
6 0.363636 0.545455 0 0.090909
7 0 0.909091 0.090909 0
8 1 0 0 0
9 1 0 0 0
10 0 0 1 0
11 0.909091 0 0 0.090909 [+] Show/hide bicluster #86 motif PSSM #2. bicluster 86 motif PSSM #2 Phaeodactylum tricornutum 15x4
POSITION A C G T
1 0 0 1 0
2 0 0 0 1
3 1 0 0 0
4 0 0 1 0
5 0 1 0 0
6 0.75 0.25 0 0
7 0 0 1 0
8 0.25 0.75 0 0
9 0.25 0.75 0 0
10 0 0 1 0
11 0.25 0.75 0 0
12 0.5 0 0.25 0.25
13 0 0.75 0.25 0
14 0 1 0 0
15 0 0.25 0.75 0 |