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[+] Show/hide bicluster #93 rows and columns.
bicluster 93
Phaeodactylum tricornutum
24x69
[+] Show/hide bicluster #93 rows (genes).
bicluster 93 genes
Phaeodactylum tricornutum
24
[+] Show/hide bicluster #93 rows (short gene names).
bicluster 93 short names
Phaeodactylum tricornutum
24
short_name
[+] Show/hide bicluster #93 rows (long gene names).
bicluster 93 long names
Phaeodactylum tricornutum
24
long_name
[+] Show/hide bicluster #93 rows (NCBI RefSeq gene IDs).
bicluster 93 NCBI RefSeq IDs
Phaeodactylum tricornutum
0
[+] Show/hide bicluster #93 gene upstream sequences.
bicluster 93 upstream sequences
Phaeodactylum tricornutum
24
upstream
[+] Show/hide bicluster #93 columns (arrays; conditions).
bicluster 93 arrays
Phaeodactylum tricornutum
69
[+] Show/hide bicluster #93 ratios.
bicluster 93 ratios
Phaeodactylum tricornutum
24x69
GENES GSE12015_Si_free_11v18_1 GSE12015_Si_free_11v18_2 GSE12015_Si_free_22v19_1 GSE12015_Si_free_22v19_2 GSE12015_Si_free_23v20_1 GSE12015_Si_free_23v20_2 GSE17237_highlight_12hr_1 GSE17237_highlight_24hr_1 GSE17237_highlight_24hr_3 GSE17237_highlight_24hr_3.1 GSE17237_highlight_3hr_3 GSE17237_highlight_48hr_1 GSE17237_highlight_48hr_2 GSE17237_highlight_48hr_3 GSE17237_highlight_6hr_2 GSE17237_highlight_6hr_3 GSE31131_Cadmium_0.12mg_2 GSE31131_Cadmium_0.12mg_3 GSE34988_Ammonia_1 GSE34988_Ammonia_3 GSE34988_Cadmium_1 GSE34988_Cadmium_2 GSE34988_Cadmium_3 GSE34988_Cadmium_5 GSE34988_Control_4 GSE34988_Copper_4 GSE34988_Dispersant_1 GSE34988_Dispersant_5 GSE34988_Dispersed_oil_4 GSE34988_Mixture_3 GSE34988_Oil_2 GSE34988_Salinity_15ppt_2 GSE34988_Silver_2 GSE34988_Silver_3 GSE34988_Silver_4 GSE34988_Silver_5 GSE34988_Simazine_1 GSE34988_Simazine_2 GSE34988_Simazine_3 GSE34988_Simazine_4 GSE42039_Dark_treated_48h_1 GSE42039_Dark_treated_48h_2 GSE42039_Dark_treated_48h_3 GSE42039_light_24h_1 GSE42039_light_24h_2 GSE42039_light_6h_1 GSE42039_light_6h_2 GSE42039_light_6h_3 GSE42514_dark_8hr_light_3hr_1 GSE42514_dark_8hr_light_3hr_2 GSE42514_light_0.5hr_1 GSE42514_light_10.5hr_1 GSE42514_light_10.5hr_2 GSE42514_light_15.5hr_1 GSE42514_light_15.5hr_2 GSE42514_light_16hr_dark_30min_1 GSE42514_light_6hr_1 GSE55959_BlueLight_24h_rep1 GSE55959_BlueLight_6h_rep1 GSE55959_BlueLight_6h_rep2 GSE55959_BlueLight_6h_rep3 GSE55959_GreenLight_24h_rep2 GSE55959_GreenLight_6h_rep1 GSE55959_GreenLight_6h_rep2 GSE55959_GreenLight_6h_rep3 GSE55959_RedLight_24h_rep3 GSE55959_RedLight_6h_rep1 GSE55959_RedLight_6h_rep2 GSE55959_RedLight_6h_rep3
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46046 -0.0391864838583266 -0.228190759318633 0.500066339564359 0.431699949300201 0.0910492747010404 0.213016096209019 1.34081642064788 1.39946238008895 0.874367158174964 0.968392355428761 1.35901989492815 1.21391924542301 1.39261835808303 1.5911806388172 -0.457170915634695 0.645454925270395 0.376277398713271 -0.136144200573562 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -2.81015080339148 -2.77190685833294 -2.78133988346335 -0.480036065559955 -0.486242547379323 -0.392290208565173 -0.543307968848096 -0.146679034724897 -0.810625389207044 -0.33549155410347 1.53874590055674 -1.96598039453733 -1.28893516744352 -0.986697414856513 -0.997123000139625 -1.17763057437231 -0.680118898285834 -0.673942647789012 -0.377475568659682 -0.097455513405432 -0.245857603532272 -0.336771904274818 -0.130235572325567 -0.119347754285997 -0.042411250299874 0.0317634375041858 0.550298520578271 0.615962245969053 0.808505455578701
46363 -0.0142540801303147 0.225827739795603 0.0711218003477544 0.208268161541248 0.00542475756853102 0.38144193329109 1.7570714037912 1.50079844170937 1.87903781233515 1.55578111423995 1.78049527567981 1.3477939648441 1.03489136289198 1.014491976982 -0.327510901161017 1.35580173803078 0.0763927013375529 0.1565067633663 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -3.1380719265332 -3.02609378165577 -3.00561958468259 0 -0.0710169674149175 -0.0658384658320524 -0.260696277996192 -0.161884127346908 0.725784445390907 0.748903767957195 1.02583046842982 -1.57692686075726 -1.072835097411 -0.950859750708245 -0.569496099518801 -0.837515497460083 -0.0655080403435099 -0.126142763052653 -0.108607204531038 -0.100483788790961 -0.204914950429613 0.139535200755878 -0.297169961683781 -0.288552871561517 -0.38122444455863 0.0084811403466784 -0.366482069751534 -0.545190753592544 -0.477172050012545
46612 0.560354652748985 0.402453379712595 0.373989597599456 0.241643399015008 0.546226644108887 0.6584196538979 2.02051551042806 0.742331714626765 1.59835606872362 0.944019426205811 1.61520579667527 1.05798051472317 0.690666833618924 0.948536233673983 -0.509160533086388 1.07875699801743 0.510011156078659 0.762800705968271 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -2.46241465842575 -2.7293670789062 -2.77027678938248 0.417940358402265 0.466057300277374 -0.0557657196212824 0.707786621824964 -0.281502512370876 -0.411032704606504 -0.102926189055148 0.647826537094966 -1.77853004147864 -1.33070463139321 -0.695185166476597 -0.299484944727719 -0.672759140900202 -1.59556211463209 -0.0887797917397373 -0.582405162235057 -1.16131387089924 -0.440765686373049 -0.455921064328378 -0.80165627573277 -0.424077640399312 -0.517849124509264 -0.680874113912513 -0.781179011049142 -0.776908161817217 -1.22846472245504
48044 0 0.0728116704299459 -0.377153976327778 -0.35131194461643 -0.276754190962744 -0.21721275303322 0.989849341288371 1.61893344338699 1.55305372335529 1.35525217752038 1.13856324945428 1.48282451001325 0.761625787446248 0.811404874071844 -0.502496560543933 0.787179715425679 -0.286919887491357 -0.28475474429392 1.43535939326114 1.69893502109271 0.508257473309396 -0.0529680158923504 -0.168694487639773 -1.18013629567205 0.02917438716424 -0.404766275243048 0.212140860713608 0.120263812328642 1.10324799090208 1.43126797105127 1.22084818019169 -0.308590754099544 0.285171463788563 0.423058390056951 0.685793165320882 0.427090532741372 -1.60432704761838 -1.7803737060479 -1.75435296271861 -1.6987656175534 -2.6481178727585 -2.76418731772134 -2.69304725138013 0.208137863374394 0.267151835929106 0.0476189369975267 -0.0614338313199156 0.0325879262031858 -0.302130412607209 -0.115759330476996 1.31698700982763 -2.11112715302891 -1.18249254572089 -0.759238683251733 -0.686382471387419 -0.140006762567277 -1.2832183250584 0.0257778878219258 -0.168294060244337 0.58822091893486 0.219236118314855 0.462995277345618 -0.207681521719126 0.0883590720203258 -0.266570426247287 0.152179811569059 -0.077413556106281 0.0155582362628966 -0.080353610671114
50738 0.0914328386404995 0.139066102934833 -0.535071851276573 -0.596522398343308 0.06755560437591 0.517223315653205 1.47384713184993 1.43411880775223 1.73096979565146 1.67692725141848 0.948459498937525 1.34601787352764 0.782792702581121 1.4039947072237 -0.489391187205602 0.892644948791111 0.333996449752366 0.302317298890763 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -3.08729569646962 -3.11956322734129 -3.17324262385939 0.494437591765017 0.47072604797737 -0.258008790547147 -0.267598688037982 -0.29801492264929 -0.0250049578007702 0.365206308232503 0.842812166700189 -1.91618169808601 -1.42007516632738 -0.202748359794731 0.0206828812188221 -0.316823117706258 -0.342709924305329 0.35331508347578 -0.0899748576910491 -0.0198656899864563 -0.164891242123693 0.376589137250628 -0.302633658889614 -0.296018490644504 -0.570440908277889 -0.0254086845335495 0.0881655268438031 0.024574034347757 -0.0377100280502354
6277 0.0278141352246369 0.469768026752367 0.184953296656719 0.0451901001906844 0.142142948189645 0.696159222469421 2.11105131232937 1.48829420969044 1.29127846778917 1.27785616441685 1.23407376921399 1.28214475403093 0.935194580519014 1.56531758135008 -0.0372777404916524 1.06055839036536 0.227781272914338 0.0298237033467972 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -3.17153857115259 -3.19756923766647 -3.08384733568718 0.348628614069424 0.369073028790845 -0.571758761296966 -0.281972693834695 -0.445352292400396 -0.92779526896122 0.0428598540736432 1.02864821212136 -0.957011032071629 -0.597665936380204 -0.276740731381443 0.184314383399524 0.0488953455846146 -1.42211082636826 0.041135927417899 -0.644994380235581 0.342414581229332 -0.262018764552986 0.172123397256198 0.116793102461057 0.040506023612869 -0.529883782288573 -0.555359149024219 -0.480260143172463 -0.375901443291027 -0.800966752829039
8363 0.0515206830210724 0.34739018335571 -0.591248074674561 -0.523208398639418 0.50408761907301 0.900985729278011 1.76162062235072 1.95859032995155 2.21997093086565 1.79829503863784 1.19413879709216 1.98345058430893 1.24959628758171 1.6532004294929 -0.743074488130253 1.02550349094324 0.346338661089712 0.343343884439984 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -2.60038315757366 -2.88999729493411 -2.67305471660359 -0.0680494125546282 0.140223606851334 -0.674173404883324 0.321742415792681 -0.703259034887614 0.419615326408068 0.850783905695239 0.677279448395633 -1.13022727644477 -0.419216589765665 -0.409638285251608 -0.136747266997643 -0.694098353553624 -0.0453721986673678 -0.140217045158476 -0.255906546254186 -0.282099558401923 -1.11391083196065 -0.248454250905489 0 -0.723076311101381 -1.58681024133751 -0.157092970616834 -0.209350399193046 -1.05850015829798 -1.73236728671887
[+] Show/hide bicluster #93 motif PSSM #1. bicluster 93 motif PSSM #1 Phaeodactylum tricornutum 11x4
POSITION A C G T
1 0.206897 0.655172 0.137931 0
2 0.344828 0.034483 0.586207 0.034483
3 0.310345 0.62069 0 0.068966
4 0.655172 0.344828 0 0
5 0.62069 0 0.068966 0.310345
6 0 0.37931 0 0.62069
7 0 0.068966 0.931034 0
8 0.896552 0.103448 0 0
9 0.689655 0.310345 0 0
10 1 0 0 0
11 0.689655 0.241379 0.068966 0 [+] Show/hide bicluster #93 motif PSSM #2. bicluster 93 motif PSSM #2 Phaeodactylum tricornutum 24x4
POSITION A C G T
1 0 0.125 0.25 0.625
2 0 0 1 0
3 0.25 0.125 0.25 0.375
4 0.625 0.25 0.125 0
5 0 0.875 0 0.125
6 0 0 1 0
7 0.25 0.375 0 0.375
8 0 0.125 0 0.875
9 0 0.125 0.125 0.75
10 0 0.875 0.125 0
11 0 0.875 0 0.125
12 0 0.75 0 0.25
13 0 0 0.375 0.625
14 0.033431 0.279069 0.404069 0.283431
15 0.283431 0.279069 0.029069 0.408431
16 0.033431 0.404069 0.279069 0.283431
17 0.533431 0.029069 0.279069 0.158431
18 0.25 0.375 0.125 0.25
19 0.875 0.125 0 0
20 0 1 0 0
21 0.125 0.5 0 0.375
22 0.25 0 0.75 0
23 0 0 0.125 0.875
24 0 0.75 0 0.25 |