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[+] Show/hide bicluster #96 rows and columns.
bicluster 96
Phaeodactylum tricornutum
26x68
[+] Show/hide bicluster #96 rows (genes).
bicluster 96 genes
Phaeodactylum tricornutum
26
[+] Show/hide bicluster #96 rows (short gene names).
bicluster 96 short names
Phaeodactylum tricornutum
26
short_name
[+] Show/hide bicluster #96 rows (long gene names).
bicluster 96 long names
Phaeodactylum tricornutum
26
long_name
[+] Show/hide bicluster #96 rows (NCBI RefSeq gene IDs).
bicluster 96 NCBI RefSeq IDs
Phaeodactylum tricornutum
0
[+] Show/hide bicluster #96 gene upstream sequences.
bicluster 96 upstream sequences
Phaeodactylum tricornutum
26
upstream
[+] Show/hide bicluster #96 columns (arrays; conditions).
bicluster 96 arrays
Phaeodactylum tricornutum
68
[+] Show/hide bicluster #96 ratios.
bicluster 96 ratios
Phaeodactylum tricornutum
26x68
GENES GSE12015_Si_free_23v20_2 GSE17237_highlight_12hr_3 GSE17237_highlight_24hr_1 GSE17237_highlight_24hr_3.1 GSE17237_highlight_30min_1 GSE17237_highlight_30min_3 GSE17237_highlight_3hr_1 GSE17237_highlight_3hr_2 GSE17237_highlight_48hr_2 GSE17237_highlight_48hr_3 GSE17237_highlight_6hr_1 GSE31131_Cadmium_0.12mg_1 GSE31131_Cadmium_0.12mg_3 GSE31131_Cadmium_1.2mg_1 GSE31131_Cadmium_1.2mg_2 GSE34988_Ammonia_1 GSE34988_Ammonia_2 GSE34988_Ammonia_3 GSE34988_Ammonia_4 GSE34988_Ammonia_5 GSE34988_Cadmium_2 GSE34988_Copper_1 GSE34988_Copper_2 GSE34988_Copper_3 GSE34988_Copper_4 GSE34988_Copper_5 GSE34988_Dispersant_5 GSE34988_Mixture_1 GSE34988_Mixture_2 GSE34988_Mixture_3 GSE34988_Mixture_4 GSE34988_Mixture_5 GSE34988_Salinity_15ppt_1 GSE34988_Salinity_15ppt_5 GSE34988_Silver_2 GSE34988_Simazine_1 GSE34988_Simazine_4 GSE42039_light_0.5h_1 GSE42039_light_0.5h_2 GSE42039_light_0.5h_3 GSE42039_light_6h_2 GSE42514_dark_8hr_light_3hr_1 GSE42514_dark_8hr_light_3hr_2 GSE42514_light_0.5hr_1 GSE42514_light_10.5hr_1 GSE42514_light_10.5hr_2 GSE42514_light_15.5hr_1 GSE42514_light_15.5hr_2 GSE42514_light_16hr_dark_30min_1 GSE42514_light_16hr_dark_30min_2 GSE42514_light_16hr_dark_4hr_1 GSE42514_light_16hr_dark_4hr_2 GSE42514_light_16hr_dark_7.5hr_2 GSE42514_light_6hr_2 GSE55959_BlueLight_0.5h_rep1 GSE55959_BlueLight_0.5h_rep2 GSE55959_BlueLight_0.5h_rep3 GSE55959_BlueLight_6h_rep1 GSE55959_BlueLight_6h_rep2 GSE55959_GreenLight_0.5h_rep1 GSE55959_GreenLight_0.5h_rep2 GSE55959_GreenLight_0.5h_rep3 GSE55959_GreenLight_24h_rep2 GSE55959_GreenLight_6h_rep2 GSE55959_GreenLight_6h_rep3 GSE55959_RedLight_0.5h_rep1 GSE55959_RedLight_0.5h_rep2 GSE55959_RedLight_0.5h_rep3
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46563 -1.22791398093575 0.506302150289944 -1.01170666734557 -0.436847358529532 0.179128959232676 -0.524954833183951 0.0217068222731407 1.17903366106278 -1.03315645271553 -1.0226466483227 0.723701587224847 1.09894209125694 0.755458740947975 1.15496626523543 0.784786662195072 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -1.94535026193738 -2.24854475180207 -2.61833787781144 0.141602016597024 -0.227557567953834 -0.20334749651419 0.500733481818429 -1.039047835407 0.264608228733272 0.382916339227712 1.13777381781302 0.260093129434122 0.83446697509941 0.696562977639733 1.14583497441432 0.746567490970211 -0.448691614369275 -2.39407445588202 -2.05467008711001 -2.09222914919486 0.167165576712916 -0.260165600122975 -2.07713589821057 -2.18088014558744 -2.0066941197011 0.159674715394375 0.363927182169286 0 -1.15255235301612 -1.15512641874635 -1.39018280212612
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48611 0.212977225981022 0.397768960265511 -0.786257496797455 -0.513351757455458 1.02709964726011 0.025926256086759 0.355251825251189 1.31712520238832 -0.451405959452364 -0.596996902886202 0.59529179251318 -0.316958543012676 0.244156203906433 -0.0999803338416597 -0.18648387027193 -1.47404614466626 -1.44183476857644 -2.32120330366154 -2.58870023450737 -1.81077118748725 -0.49103784737629 0.307017458871272 0.393253226270191 1.0161818997625 0.919952334950779 0.821413274169518 0.0962641803465183 -1.45832175033395 -1.41043330173878 -1.14024499922866 -0.97534570091855 -1.70982667046718 0.36747313452239 0.368117302891903 0.620788496164526 0.421295682974386 0.97201493123021 -2.33249042064496 -2.37368969879356 -1.84215706758561 1.98502925069401 0.984612179329579 0.714023179814126 1.11565195295569 0.456702996399609 0.286593737618841 1.01933673918077 0.78455681148857 1.03782176577842 0.736700354823114 0.383646511054908 0.140223436662602 -0.395066909615892 0.883740666360013 -1.96361939684489 -1.96510998157329 -2.02540503278014 0.800963742281576 1.30789934419465 -1.06044584794417 -0.932171272959394 -0.324795015550201 -0.167506683923422 1.61168129801404 1.39812612501164 -0.00308165951737427 -0.428615172830547 -0.12158825381187
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48896 -0.0937866792762632 0.517247149985866 0.148267195439119 -0.0771517493394491 -0.0167099829448141 -0.619693601206956 -1.04066097100098 0.434857966233373 -0.421550857180974 0.123725459070739 0.164726128860144 -0.67409933894897 -0.37230768390211 -1.10083222423246 0.0499177350603369 -2.73636273477233 -2.53418298918557 -2.41470856924077 -2.7451519681789 -2.32485729617855 0.31610185026581 0.612920381543599 0.34310436014037 0.152496385466743 -0.264090734154403 0.215111480687743 0.156750025701683 -1.6729376837415 -2.41295495951262 -1.54119940288119 -1.2896541012532 -1.22178625965068 0.632862742299355 0.610185102360709 -0.277061406854902 -0.349771641036804 -0.628896660816046 -1.48707047292294 -1.62637070182682 -1.52020238433046 0.594593164632523 0.512725690815141 0.502367186051166 -0.058196238743311 1.4434531529681 1.16599259693795 0.895180834252099 1.35824994375451 0.461363552740495 0.816940707446337 -0.0217342888039376 0.567545076505807 0.102125468697628 0.933710808375946 -2.41332427308365 -2.71006364630098 -2.56113486779707 0.482298504929488 0.334962474720284 -1.12301969374866 -1.03392728926828 -0.940212068278884 0.455481450421109 0.717154696500195 0.325077673846267 -0.310469789486011 -0.58912102569514 -0.55234150719196
48961 0.480680605612222 0.723455360325114 -0.33648924647434 -0.273175178975461 0.768777564296219 1.13849918585922 -0.0703371590042227 -0.104060454417206 -0.248031998484499 -0.608426133885478 1.04211394099011 0 0.389853018444521 -0.350509784393458 -0.0583755555796284 -3.40243818486801 -2.99959208078015 -1.83119438173621 -2.03420697150934 -2.66448492156215 0.828478214579753 -0.520257270445705 -0.913869218186923 -0.498797934086912 -0.396834845165738 -0.485079312167248 -0.229698492878637 -1.65234862718217 -1.52260204904964 -0.76732094690841 -2.968517740147 -1.75637665887646 -0.557519240454655 -0.398939830917551 0.517985525654173 -0.134854041746823 0.138298087786694 -2.21562891951713 -2.00973552640999 -1.92051184036908 1.14000081312714 0.97125655925709 0.796829494605377 0.648440307704889 1.15028102894571 0.104540900882092 0.633341309756841 -0.587631029462372 0.219267860113484 0.213754887580699 0.163485835415488 0.0332621630865655 0.2569847714195 0.225206483615238 -1.92675413219152 -2.30424256285582 -2.79700647715803 0.593064894361898 0.85335936291453 -1.17095948008058 -1.33312329417401 -1.18845652837519 0.220666672533363 0.515907420533539 0.513780912591717 -1.16995356078831 -1.22619813526885 -1.41496789741701
48964 0.084408664274277 1.96108690071915 -1.78604942420171 -1.63481043720973 0.106564061580618 -1.13811113637694 0.00910576513598496 2.01360431770195 -0.203608396841899 -1.69401358209921 0.519067886463311 0.305745366700047 -0.154433843812429 0.171509359036189 -0.354409738692355 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -1.88086198810888 -1.76434467461552 -2.49719317174272 0.157879080606981 0.949085807298533 0.919417729486178 -0.184927291239761 1.39592894387182 0.55947055038086 1.11156903550702 0.831717099533263 1.35955284592886 1.30524122554123 0.722354327134237 0.662929104423347 0.410587499942199 0.351708018661231 -1.66637904991841 -1.27092952479551 -1.74304924368855 0.273823240438211 0.136888665487892 -1.66637904991841 -1.96400323288477 -1.70792770475069 -0.0711517955579192 -0.462644384075249 -0.542852115511871 -0.696423025160983 -0.749627921571021 -1.37369775782832
49228 -0.0637147990467793 0.99066086459716 -0.498496864736057 -0.438199495819968 0.824342070067231 -1.71602489047245 0.248379594199208 1.39046543636124 -0.507297230010457 0.284210480281334 1.11235999227948 0.111404360757551 -0.0759982400024039 -0.250545897366799 0.42847236983216 -3.96159952776874 -3.44787096455753 -2.30428975536938 -3.30126417732663 -2.49840770287372 0.552424348869987 0.310722897764771 0.57625271833774 1.1751877194622 1.33574250642757 1.04978208953666 0.627574004286662 -1.67499702732347 -1.31486457172344 -0.987437559622112 -0.570919051466871 -2.00820187116999 0.993437548138406 1.08843110048814 0.751617083580825 1.5693990779382 1.69417879684692 -1.03356567473611 -1.27904245391436 -1.80320429971461 0.363828545848873 0.0667634926416574 0.167847894044384 -0.464326585306679 0.408884835524436 0.0412545465083578 1.04439368747012 0.443566986514252 0.943121668141341 1.21718227875597 0.492185578810767 0.553566556483161 0.234976751344469 0.269718050822766 -2.50971489575718 -2.23451858888646 -2.18155988743793 -0.0224901813472348 -0.456370524640536 -1.07336037607634 -1.08247563733084 -0.994143297754023 -0.691794392348032 -0.0483683583449223 -0.361048831366629 -0.106872612928571 -0.303767102620419 0.254810965396378
[+] Show/hide bicluster #96 motif PSSM #1. bicluster 96 motif PSSM #1 Phaeodactylum tricornutum 11x4
POSITION A C G T
1 0.181818 0 0 0.818182
2 0 0 0 1
3 0.090909 0 0.636364 0.272727
4 0 1 0 0
5 0 1 0 0
6 0.818182 0 0 0.181818
7 0.272727 0 0 0.727273
8 0.272727 0.090909 0 0.636364
9 0 0 1 0
10 0 1 0 0
11 0 1 0 0 [+] Show/hide bicluster #96 motif PSSM #2. bicluster 96 motif PSSM #2 Phaeodactylum tricornutum 14x4
POSITION A C G T
1 0 0 0 1
2 0.058824 0.058824 0.176471 0.705882
3 0 0.411765 0 0.588235
4 0 0 0.058824 0.941176
5 0 0.764706 0.117647 0.117647
6 0.941176 0 0 0.058824
7 1 0 0 0
8 0.941176 0 0 0.058824
9 0.941176 0 0 0.058824
10 0.117647 0.058824 0.411765 0.411765
11 0.647059 0.352941 0 0
12 0 0.294118 0.235294 0.470588
13 0.470588 0.529412 0 0
14 0 0.117647 0 0.882353 |