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[+] Show/hide bicluster #98 rows and columns.
bicluster 98
Phaeodactylum tricornutum
35x70
[+] Show/hide bicluster #98 rows (genes).
bicluster 98 genes
Phaeodactylum tricornutum
35
[+] Show/hide bicluster #98 rows (short gene names).
bicluster 98 short names
Phaeodactylum tricornutum
35
short_name
[+] Show/hide bicluster #98 rows (long gene names).
bicluster 98 long names
Phaeodactylum tricornutum
35
long_name
[+] Show/hide bicluster #98 rows (NCBI RefSeq gene IDs).
bicluster 98 NCBI RefSeq IDs
Phaeodactylum tricornutum
0
[+] Show/hide bicluster #98 gene upstream sequences.
bicluster 98 upstream sequences
Phaeodactylum tricornutum
34
upstream
[+] Show/hide bicluster #98 columns (arrays; conditions).
bicluster 98 arrays
Phaeodactylum tricornutum
70
[+] Show/hide bicluster #98 ratios.
bicluster 98 ratios
Phaeodactylum tricornutum
35x70
GENES GSE12015_Si_free_11v18_1 GSE12015_Si_free_11v18_2 GSE12015_Si_free_22v19_1 GSE12015_Si_free_22v19_2 GSE12015_Si_free_23v20_1 GSE12015_Si_free_23v20_2 GSE17237_highlight_12hr_1 GSE17237_highlight_12hr_3 GSE17237_highlight_24hr_1 GSE17237_highlight_24hr_3 GSE17237_highlight_30min_1 GSE17237_highlight_30min_2 GSE17237_highlight_30min_3 GSE17237_highlight_3hr_3 GSE17237_highlight_48hr_1 GSE17237_highlight_48hr_2 GSE17237_highlight_48hr_3 GSE17237_highlight_6hr_3 GSE31131_Cadmium_0.12mg_1 GSE31131_Cadmium_1.2mg_1 GSE31131_Cadmium_1.2mg_2 GSE31131_Cadmium_1.2mg_3 GSE34988_Ammonia_1 GSE34988_Ammonia_3 GSE34988_Ammonia_4 GSE34988_Cadmium_1 GSE34988_Cadmium_2 GSE34988_Cadmium_3 GSE34988_Cadmium_4 GSE34988_Cadmium_5 GSE34988_Control_1 GSE34988_Copper_4 GSE34988_Dispersant_2 GSE34988_Dispersant_3 GSE34988_Dispersed_oil_1 GSE34988_Dispersed_oil_2 GSE34988_Mixture_1 GSE34988_Mixture_3 GSE34988_Mixture_4 GSE34988_Salinity_15ppt_3 GSE42039_Dark_treated_48h_1 GSE42039_Dark_treated_48h_2 GSE42039_Dark_treated_48h_3 GSE42039_light_24h_1 GSE42039_light_24h_2 GSE42039_light_24h_3 GSE42039_light_6h_2 GSE42514_dark_8hr_light_3hr_1 GSE42514_dark_8hr_light_3hr_2 GSE42514_light_0.5hr_1 GSE42514_light_0.5hr_2 GSE42514_light_10.5hr_1 GSE42514_light_10.5hr_2 GSE42514_light_15.5hr_2 GSE42514_light_16hr_dark_4hr_2 GSE42514_light_6hr_1 GSE42514_light_6hr_2 GSE55959_BlueLight_24h_rep1 GSE55959_BlueLight_24h_rep3 GSE55959_BlueLight_6h_rep1 GSE55959_BlueLight_6h_rep3 GSE55959_GreenLight_24h_rep2 GSE55959_GreenLight_6h_rep1 GSE55959_GreenLight_6h_rep2 GSE55959_GreenLight_6h_rep3 GSE55959_RedLight_24h_rep1 GSE55959_RedLight_24h_rep2 GSE55959_RedLight_24h_rep3 GSE55959_RedLight_6h_rep1 GSE55959_RedLight_6h_rep2
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51430 0.0607844380204905 -0.139647755254274 -0.202397043726313 -0.51583887789004 0.372398623005421 0.237761800167357 2.07860355995355 0.972763101748528 1.54322723992651 1.38867817928545 1.72046656512234 -0.384738556212949 0.610181873330872 0.667685808659762 0.643012544746 0.856329664731284 0.922971845954161 1.17221750271264 -0.345599449049006 -0.316588564417565 -0.420344208297884 -0.143162933841494 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -2.65878325462459 -2.69612486308193 -2.75254590462167 0.390611339134417 0.410382917236214 0.356428707920026 -0.556036828752679 -0.846527613491312 -0.53938821724267 0.398574659350925 0.823470659929228 -1.72313134352588 -1.12661157706852 -0.580965522687668 -0.158898444511059 -1.19772535395224 -0.643876975818719 0.0611003582997583 0.00858603637199913 -0.769160637962169 -0.714959065533033 0.312727213835417 -0.762829557409685 -0.553987462862391 -0.588753648768869 -0.0371562873084856 0.14387672783205 -0.0334512256743892 -0.768577707453751 -0.375251114876143
522 -0.176492450559997 -0.38985063095237 -0.342996539228487 -0.58256124550032 0.252076896903095 0.595938281927528 2.13724201248015 1.29196243229538 1.65119037113095 2.0490901419436 1.05904200682733 0.138774702893736 0.263356291526568 1.3298004202672 1.3058015956588 0.624664869689539 1.9063916378442 1.135448588947 -0.430608396504496 -0.850892246391557 -0.229395220226766 -0.696864052315986 3.04812719087955 2.39693896503048 2.40612819068078 -1.20970350543633 -0.160609446861051 0.100875112379796 -0.189291510000305 -0.531476484741219 -0.280238944478748 0.182134891615579 0.153195355977369 0.290068361143672 -1.04879829543018 0.289250439588231 1.91168318145963 1.40209013849919 1.9308189748869 -0.0443828957471651 -1.94495414131182 -2.03536713378196 -2.05374885738474 0.560966625407844 0.57106803319747 0.258056006680798 -0.524207648764617 -1.65320874723989 -0.81226780778162 0.222151471651875 -0.145632460493785 -2.05875815910024 -1.68909979544402 -0.719434289496753 -0.463628921214015 -2.23516704424499 -1.1858253687938 0.294070958710161 0.0915336498169988 -0.612865562650176 -0.0452075136059852 0.320271841379252 -0.108884853593807 -0.0929340725411811 -0.254656826705543 0.0541144043828857 -0.0318685602516771 -0.263443582947201 -0.410835386798341 -0.335794362591379
5873 0.155419757265113 0.282422564808117 0.142754657343927 -0.200610273852673 0.0361567330072772 0.0477664079350311 2.13944284075202 1.30565709594061 1.35339748647686 1.31594748962657 1.41753566332773 -0.0284176861742145 0.148763543639867 1.37304246368794 0.72885326469668 1.44095554393199 1.79759420346265 1.35129367265661 -0.347641529687709 -0.0107885707005858 -0.0849427307391302 0.191853028038391 2.64995809193388 2.213327716726 2.01853074015487 -0.925945376081039 -0.588515644925422 -0.038224863494838 -0.137646555757728 -0.714263429018319 -0.118509077895694 -0.25853591253261 -0.588515644925422 -0.141061956771557 -1.55412015429612 -0.63084703514158 1.89287535852015 1.50994518288227 2.26079440038062 0.498114290128398 -2.82498345445336 -2.71869425234491 -2.73153828148319 0.37663444781562 0.447980879972529 0.267435437062502 -0.522358033094897 -1.49878939348534 -0.732111930798873 0.0797569696750848 0.488808868557994 -0.934960655974521 -0.640410295264578 0.321573419176093 -0.265742695532228 -1.10205435053703 -0.921047286175005 -0.0777440215357209 -0.0192178633925003 -0.521234981046024 -0.378040151093006 -0.164629937202974 -0.590205680525271 -0.502887486631233 -0.0972398734778277 -0.120911048823726 -0.623886582909217 -0.417180466219497 -0.00140765497190257 0.063085302964795
7664 0 0.0318363254726105 -0.186375155370907 -0.0514024005026523 0.229707931708627 0.501090497803275 2.06194926119559 1.35635348392153 1.15651753218674 1.38237636371149 0.94896458780874 0.0644552939464226 -0.535201794033616 0.832997455990853 0.886943446247411 0.641213441573505 1.10420315361065 0.978519309955814 0.03042027224586 -0.258258925260939 -0.374866099872182 -0.38678482422099 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -1.87161481002327 -2.05821039744779 -2.0963877791061 0.474942294054629 0.602501094018475 0.646097261693959 -0.392016841615297 -1.05994671061858 -0.777912181833629 -0.275906928443555 -0.46256393959734 -1.84248558640793 -1.95026455632701 -0.131814483582802 0.0767306456354756 -1.89213928135075 -1.31803922250785 0.600233922023573 0.559493564180244 -0.575824389350117 -0.21441828105284 0.18328633819791 -0.370451540218535 -0.233746587672921 -0.50644457544418 0.533289632108713 0.35282199992514 0.366672641190103 -0.154468876632008 -0.24565515383347
8755 -0.597368170151481 -0.52124744025222 -0.574827565666748 -0.676814563007505 -0.660555766329993 -0.462124543243085 2.82512331118905 1.25665197643372 1.59329405682267 1.95750957830425 1.52322603350472 -0.00952029073284504 0.0949276971959173 1.79972534691112 1.58381222221483 0.485061218653881 1.21215830125328 1.70858370599048 -0.0419455045612922 -0.472278900804404 -0.0130048464753209 -0.498869423734262 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -2.68549905653721 -2.58965806392506 -2.50861761241088 1.40650252778097 1.37233580841834 0.183629876739591 -0.203634193846822 -1.09419363444369 -0.462082652457166 0.599917752845565 0.762653703641632 -0.998073774503369 -0.90658190247657 -0.561512956803076 -0.327897802041732 -1.78096458580496 -0.459441058402033 0.998657726191398 -0.0405816288203034 -0.188865544901334 0.237618681441419 1.11597761011262 0.137458251386824 0.263310654513499 0.327239069733809 0.542509646820636 0.72353493251501 -0.422470628024363 -0.27080720173533 0.160005430921079
8976 -0.50794364733378 -0.298980952327343 -0.821762174959936 -1.09064248860621 0.499795801165007 0.0305659501917703 3.31252355237962 1.35357692856873 1.79201661326342 1.44065220785708 1.63938396948076 0.152374724035398 0.963996317023663 1.52342090830568 1.20193292549363 0.921866741417526 1.42240729298124 1.85465673870021 -0.842845687018829 -0.643986600455534 -0.963954173694603 -0.485515733706656 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -2.61093288752175 -2.34281440860731 -2.31930103707853 1.00285524675892 0.770828534519677 0.326708863184509 -0.0337247040229791 -0.483621994893715 -0.322662588148131 0.371688378375137 0.207474154050194 -1.52746821824214 -1.21542558218502 -0.33714882290427 -0.375196020040007 -1.48359509264298 -0.69684713252739 0.643700856860413 0 0.129650015599135 0.11007600630538 0.651069868776587 -0.0904161712548009 0.154420753397624 0.367169608054904 0.0667160734565202 0.363837631588789 -0.320111832305591 0.164788977279971 -0.0789421223908792
9199 0.210382875675707 -0.0686166382851899 -0.587619143232905 -0.4788727417686 -0.170071006998244 0.172971577212769 2.12065767282673 0.966271820221338 1.67106263787483 1.58395772143663 1.08270656056467 -0.580583916852459 0.359149855148289 1.18088268498869 1.25061354078478 0.887096196787863 1.4891803183645 1.32987476634185 -0.314893947887105 -0.0690922056385323 -0.434159899207344 0.116008119629412 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -3.0595194736365 -3.12027675696384 -3.00016394761011 0.741141614025643 0.492902055175298 0.0684754247118207 0.136219929632159 -0.54261524403523 0.0708322864943194 -0.0994698210175938 0.101063750400192 -1.68747993001256 -0.85439555765121 -0.245525652538817 0.0445923474238656 -0.950618267502588 -0.22454576878974 0.31429136220192 -0.130588878166147 0.108573382598925 -0.017638914863579 0.410700020747834 0.162280002987784 0.299452426832445 0.0410572527632109 0 0.142625921094527 -0.30822922670955 -0.236342069837801 0.0856894048024935
9538 0.125148902516054 -0.0915470003461074 -0.209638995731393 -0.480727024546875 -0.441750848730057 0.258656848037842 3.45854561787172 1.64416391222111 1.16367492449485 1.11354109118301 1.45000729192645 0.615559363056577 0.751775280196683 1.35458546925133 0.856045276516183 0.814811972905794 1.90450731465843 1.53997826732688 -0.546244812627012 -0.685558463143603 -0.288289428125927 -0.442399482103725 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -2.40282467989443 -2.30662444157276 -2.19043897744509 0.398982440181941 0.458611525580864 -0.243672256843427 -0.72156653275027 -1.79398323607969 -0.848433033021126 0.794616324818414 0.928684801378843 -0.357506659963213 -0.530387524422655 0.770968726404134 0.056994669377372 -2.33991818416077 -1.2430682399733 0.266068360207757 -0.41505528450669 -0.665255631238557 -0.549987048340919 0.0318240924456047 -0.364668797923833 -0.570591183851023 -0.486081849445596 0.0976390470792887 0.118012524435877 -0.478083444677582 -0.57935306002666 -0.493391784095149
[+] Show/hide bicluster #98 motif PSSM #1. bicluster 98 motif PSSM #1 Phaeodactylum tricornutum 24x4
POSITION A C G T
1 0.214286 0.642857 0 0.142857
2 0.142857 0.571429 0.285714 0
3 0 0 1 0
4 0 0.571429 0 0.428571
5 0.071429 0.142857 0.357143 0.428571
6 0 0 0.857143 0.142857
7 0 0.714286 0.285714 0
8 0.285714 0.357143 0.071429 0.285714
9 0.357143 0 0.428571 0.214286
10 0.142857 0.357143 0.285714 0.214286
11 0 0.214286 0.285714 0.5
12 0 0.642857 0.214286 0.142857
13 0.214286 0.5 0.071429 0.214286
14 0 0.071429 0.642857 0.285714
15 0 0 0.928571 0.071429
16 0 1 0 0
17 0.142857 0.714286 0.142857 0
18 0.142857 0.428571 0.285714 0.142857
19 0.571429 0.142857 0.285714 0
20 0 0.357143 0.642857 0
21 0.142857 0.142857 0.5 0.214286
22 0.642857 0.285714 0 0.071429
23 0.5 0.5 0 0
24 0.071429 0 0.928571 0 [+] Show/hide bicluster #98 motif PSSM #2. bicluster 98 motif PSSM #2 Phaeodactylum tricornutum 15x4
POSITION A C G T
1 0 0 1 0
2 0 0.076923 0.076923 0.846154
3 0 0.769231 0 0.230769
4 0.076923 0.076923 0.846154 0
5 0.076923 0 0 0.923077
6 0 0.923077 0 0.076923
7 0.384615 0 0.615385 0
8 0 0.153846 0 0.846154
9 0 0 0.538462 0.461538
10 0 0.307692 0.307692 0.384615
11 0 0.076923 0 0.923077
12 0 0.923077 0.076923 0
13 0.076923 0 0.538462 0.384615
14 0.615385 0.307692 0.076923 0
15 0.230769 0.692308 0 0.076923 |