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[+] Show/hide bicluster #108 rows and columns.
bicluster 108
Phaeodactylum tricornutum
13x65
[+] Show/hide bicluster #108 rows (genes).
bicluster 108 genes
Phaeodactylum tricornutum
13
[+] Show/hide bicluster #108 rows (short gene names).
bicluster 108 short names
Phaeodactylum tricornutum
13
short_name
[+] Show/hide bicluster #108 rows (long gene names).
bicluster 108 long names
Phaeodactylum tricornutum
13
long_name
[+] Show/hide bicluster #108 rows (NCBI RefSeq gene IDs).
bicluster 108 NCBI RefSeq IDs
Phaeodactylum tricornutum
0
[+] Show/hide bicluster #108 gene upstream sequences.
bicluster 108 upstream sequences
Phaeodactylum tricornutum
13
upstream
[+] Show/hide bicluster #108 columns (arrays; conditions).
bicluster 108 arrays
Phaeodactylum tricornutum
65
[+] Show/hide bicluster #108 ratios.
bicluster 108 ratios
Phaeodactylum tricornutum
13x65
GENES GSE12015_Si_free_11v18_1 GSE12015_Si_free_11v18_2 GSE12015_Si_free_22v19_1 GSE12015_Si_free_22v19_2 GSE12015_Si_free_23v20_1 GSE12015_Si_free_23v20_2 GSE17237_highlight_24hr_1 GSE17237_highlight_30min_2 GSE17237_highlight_48hr_2 GSE17237_highlight_6hr_3 GSE31131_Cadmium_1.2mg_1 GSE31131_Cadmium_1.2mg_3 GSE34988_Ammonia_3 GSE34988_Ammonia_5 GSE34988_Cadmium_1 GSE34988_Cadmium_2 GSE34988_Cadmium_3 GSE34988_Cadmium_4 GSE34988_Cadmium_5 GSE34988_Dispersant_5 GSE34988_Dispersed_oil_5 GSE34988_Mixture_2 GSE34988_Mixture_3 GSE34988_Oil_4 GSE34988_Oil_5 GSE34988_Salinity_15ppt_1 GSE34988_Salinity_15ppt_2 GSE34988_Salinity_15ppt_3 GSE34988_Salinity_15ppt_4 GSE34988_Salinity_15ppt_5 GSE34988_Silver_1 GSE34988_Silver_2 GSE42039_Dark_treated_48h_1 GSE42039_Dark_treated_48h_2 GSE42039_Dark_treated_48h_3 GSE42039_light_24h_2 GSE42039_light_24h_3 GSE42039_light_6h_1 GSE42039_light_6h_2 GSE42514_dark_8hr_light_3hr_1 GSE42514_dark_8hr_light_3hr_2 GSE42514_light_0.5hr_1 GSE42514_light_0.5hr_2 GSE42514_light_10.5hr_1 GSE42514_light_10.5hr_2 GSE42514_light_15.5hr_1 GSE42514_light_15.5hr_2 GSE42514_light_16hr_dark_30min_1 GSE42514_light_16hr_dark_4hr_1 GSE42514_light_16hr_dark_4hr_2 GSE42514_light_16hr_dark_7.5hr_2 GSE42514_light_6hr_2 GSE55959_BlueLight_0.5h_rep2 GSE55959_BlueLight_24h_rep3 GSE55959_BlueLight_6h_rep1 GSE55959_BlueLight_6h_rep2 GSE55959_BlueLight_6h_rep3 GSE55959_GreenLight_24h_rep1 GSE55959_RedLight_0.5h_rep3 GSE55959_RedLight_24h_rep1 GSE55959_RedLight_24h_rep2 GSE55959_RedLight_24h_rep3 GSE55959_RedLight_6h_rep1 GSE55959_RedLight_6h_rep2 GSE55959_RedLight_6h_rep3
12783 0.137569515956681 0.0396843287811245 0.150141044897855 0.124422191796826 -0.168081779292482 0.00724786479549907 0.697479504211746 -0.314679241968344 0.111839146951279 0.359356237605139 -0.532841332715214 -0.539444744214773 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -2.45630805140268 -2.40727177921968 -2.47317240362859 0.33902611150591 0.226637701868317 -0.333949629412372 -0.357005620807411 -0.41601089756546 -0.470331323151455 -0.313948842810028 0.00170313288476654 0.693000583859902 0.598147132419871 1.00626588757276 1.01443585577769 0.887645161387969 0.522932125399135 0.629870966140416 0.180793586087054 0.255962270421745 -2.66243217750451 -0.0260592723676378 0.124367558877328 0.00227331400536119 0.0325856691125699 -0.016052130564175 -1.58872919535511 0.243854132979015 0.284419217427036 0.169300737405375 -0.0325355818564385 0.00537211622128152 -0.0317070390619798
36337 -0.626262852803011 -0.460790999562396 -0.0539782483640751 -0.0159770572491877 -0.0267773957765768 -0.0711787875002873 0.554578159650239 -0.152950683903891 -0.0889740119430693 0.375809889644794 -0.0370870522572894 -0.0560503133111816 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -2.03401566151716 -2.17739801453849 -2.1924636475348 0.458438694960336 0.303020596593619 -0.175352055180639 -0.318533040792918 -0.233795779791093 -0.589229684272074 -0.33681397998272 -0.267151639612814 0.598257677069199 0.527349307777643 1.11696701876466 0.846032420392578 1.17732236991607 0.793795051883012 0.650915502942365 0.135063972828704 0.0597328924554413 -1.95449332553676 -0.0691484959893563 0.0941981005016386 0.407931647133967 0.217544332430535 -0.134397652079932 -2.90233757662818 0.0587701698599882 0.114068921840779 0 0.200941503284273 0.355396848365041 0.511916603507768
38652 -0.470488265073975 -0.540164908616218 -0.174158285251937 -0.0369058014903321 -0.291453137446166 -0.117319884238415 0.385961398033657 -0.395731178829229 -0.11882429284019 0.504604265693401 -0.356637563216315 -0.310244823169343 -2.31572627293088 -1.86648243728645 -0.249711821244295 0.0512835117214671 0.415054162575733 0.236369145492813 -0.545477000092976 0.124444074974295 0.0259906975419948 -2.8240063583541 -2.19099160083561 0.252519981385572 0.370299173785892 0.513053953228364 0.452840926797131 0.357938204594305 0.526134430051345 0.43395862642396 0 0.117784732685527 -2.33048931299774 -2.32120741456263 -2.36362653562071 0.41383775941837 0.156446694037377 -0.010853477566054 -0.0171861922321818 -0.517695803511634 -0.435049205924403 -0.301448569314829 -0.130072961291477 0.627742455425077 0.607872819498603 1.12224006055818 1.01170094646598 1.04465023560393 0.587280516643802 0.684201894339314 0.0702655680005358 0.233254991832996 -2.67557221287232 -0.14197401297989 0.109001403380272 0.149334577607556 0.146686151130853 -0.16829961374048 -2.13023876185098 0.137806615622702 0.0943078870304665 -0.102691754108441 0.105840136525164 0.292414441048945 0.346023750553358
42951 -0.00929521647440386 -0.0125128041748716 0.17226866090913 0.261625667904976 -0.0107661137089034 -0.114004713355338 0.00886668712857892 -0.0527032324860277 -0.285837686221886 0.273766085954226 -0.141285260501446 -0.137637435359888 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -2.33481783591604 -2.31709663115707 -2.32249904429944 0.104386396204197 0.238727831425995 -0.146247040289226 -0.074475559067013 -0.217148877642696 -0.425928639388142 -0.250358621336827 -0.0578741455131176 0.673059007205691 0.561239750757502 0.940788523681223 0.797332637115948 0.838655782807545 0.543618589153719 0.561847615637038 0.138795571142641 0.294218416030461 -2.50384773118458 -0.0135443438712697 0.201770395202082 0.072017599290002 0.0917345883096239 -0.0111715893798875 -2.50921733579037 0.0649424394476098 0.109601994704297 0.233059422537652 0.0316292468659652 0.23887034771581 0.242394988488789
45068 -0.0902783909117163 -0.216728063871866 0.0793742087991669 0.103280966684948 -0.161913283290896 -0.0599680371636722 0.437749316698752 -0.275452453179943 0.12423780141018 0.482376403169253 -0.056328233275562 -0.100260316141812 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -2.15231390236128 -2.12428272860531 -2.17702579042839 0.143265657675971 0.131094424208949 -0.0619140484680176 -0.048991614990564 -0.25852655754759 -0.204453996003502 -0.126171641194942 -0.0382509225196088 0.567546427518514 0.473906177379673 0.836430092369194 0.708799588643893 0.794828031229356 0.48669506770612 0.45789937678013 0.0627832343311261 0.296438015313657 -2.35051532952905 -0.0313787504470204 0.0612921884023786 -0.0266570650075497 0.0376478329232181 -0.0285265172568038 -2.64475739347277 0.126591494133043 0.0345904631910791 0.0388941792669516 0.0206189703814513 0.0946200484217767 0.0649135335010972
46095 0.0377772224263029 -0.0680834499160276 0.104119599525922 0.16026126944052 -0.0681590107099908 -0.0509311496863995 0.40560641183083 -0.298360258774212 0.0554244458563895 0.462883760478693 -0.113874046665618 -0.199364284563431 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -2.27280081494766 -2.22992767544139 -2.31323150920173 0.201330833260042 0.14975254173356 -0.0752734865084523 -0.0353239162730098 -0.314107436882015 -0.294774973060702 -0.218884884493391 0 0.57931019109293 0.503726012675983 0.712401196436826 0.730144040132372 0.693984760512823 0.426108635333519 0.555112425231866 0.183976189321445 0.211721252090587 -2.27821940006235 -0.0513335705142896 0.0434964803263792 0.126603214864055 0.112564262539281 -0.0556118504429238 -2.63896613799501 0.0804422032980782 0.00660918673408965 0.00998517306571322 0.00913661672357166 0.104904006898268 0.160305769680036
46203 -0.242170759178472 -0.345771653272777 0.136269986488959 0.202751843661775 -0.0198178520906955 -0.070305523334979 0.35085704185481 -0.0032667601701936 -0.0118853139732492 0.36272357160757 0.0982221305774039 0.0882710491153627 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -2.43820357122907 -2.35181391489448 -2.38523829623007 0.0626967931094128 0.275688618504361 -0.178244471953399 -0.108898789406822 -0.183094024989571 -0.331618873343084 -0.0988073424179838 -0.00140475160324721 0.817094473104531 0.612471050791757 1.09016889795583 0.899469984252166 1.05411725338931 0.715223416600223 0.666445415127721 0.238891137534183 0.252343871368396 -2.16271479847117 0 0.0376993723797355 0.0515251799160064 -0.0383921891305533 0.000847300969076493 -2.64341031868923 -0.0957471922802113 -0.046906040504344 0.146673810700029 -0.0220113502599016 0.0808352968769815 0.183767780701881
46314 0.0696412318267519 0.153740564585137 0.24709941525222 0.344085705924773 0.0677320528765048 0.0499766886392068 0.302207865651102 -0.220794525158538 -0.25607901592753 0.350184578081337 -0.0595223608732654 -0.152554741939856 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -2.27691835168587 -2.10258517599098 -2.21835009356475 0.371478965336806 0.28114076218906 -0.216279805448077 -0.400968303238337 -0.253332865136788 -0.757416931853153 -0.12624407658845 -0.20934177811938 0.727770443826304 0.430115657501651 1.00557295181545 0.786165811649444 0.872545028623987 0.646684320513169 0.471956435616506 0.0468894164090083 -0.122955378524795 -2.28154755063928 -0.0107328291864317 0.267292430685608 0.185933672790986 0.295596972997246 0.0508187298312762 -2.53231236718086 0.21779973928601 0.339865638902227 0.215887414358955 -0.0774794732379826 -0.0375613077945546 0.136348830042861
47183 0.121513897678621 0.130441216473631 0.169668646843821 0.184181037003196 -0.0627055034656918 0.00273218307112781 0.430654194237241 -0.133402832011788 -0.0175746086864272 0.313614845987671 -0.309680877353131 -0.278103675443926 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -2.16824028896346 -2.11413962143593 -2.26530675413182 0.170966353575815 0.283501892159165 -0.304980275809319 -0.282543829661992 -0.374907709865755 -0.53852284088982 -0.135326102496986 0 0.69403464655687 0.522899259469752 0.927294667759201 0.808161984520987 0.883400362293452 0.633474677004148 0.598089864354891 0.132730485054821 0.17751673198763 -2.3999776334388 0.0193673043702039 0.0452983821788919 0.013615401199074 -0.00451347489381442 0.0284521752215254 -2.50631247411246 0.0666258781088132 0.0362892731278366 0.178830123434293 -0.0606063284866782 -0.0117828718798805 0.0251509752960689
49227 -0.399880505737217 -0.515701595668604 0.15532981614261 0.211553646206391 -0.113841770287736 -0.151090057704991 0.275883546969616 -0.162295467036702 -0.235903705356203 0.491910963627926 -0.0389263279192526 -0.200981678907837 -2.47314938650746 -1.99726428254759 -0.180302731783976 0.01868948282714 0.288501585185531 0.151654525749022 -0.545750599219788 0.000739839540639023 -0.184014460373296 -2.96609076239484 -2.51031664132963 0.238830726851429 0.148950159522954 0.686730152333857 0.628556058164739 0.526044167866369 0.507735123585356 0.475086346062108 0.149767808627614 0.269625530606303 -2.17181905586919 -2.13265240434343 -2.25941813242973 0.470245916011346 0.289886719591424 0.00481070822083262 -0.12857138401257 -0.307082407024117 -0.284455571020203 -0.318462274129353 -0.0117485902720163 0.627632975594326 0.738789208418465 1.37653114500092 1.14299044936808 1.17299560817907 0.658710149176613 0.700760380107588 0.154108197360104 0.558078686128016 -2.24892859675266 -0.171857360096527 0.0814988084109655 0.0150764421914395 0.0982942670235035 -0.131278011861072 -2.33531694282722 0.0957976153766731 0.200038718420558 0.0346996415395269 0.113736022327288 0.304071514799076 0.364009599731491
49305 -0.442381370279094 -0.330087119444314 0.0473802400193381 -0.089020657054431 -0.0411125119972011 -0.0716272540718698 0.673753299111855 -0.294583217040437 0 0.566588576419826 -0.108040495789572 -0.187064523340341 -1.94146388790349 -1.9081477704474 -0.0843092036624429 0.214033191586605 0.54209606068886 0.351566258826725 -0.169906692539144 0.0421777588586872 -0.196186702458813 -2.61278406354128 -2.76664671661986 0.305518499946613 0.449457209637151 0.547040303317734 0.564645905816684 0.44687883599081 0.54503286049561 0.481520208695204 -0.14384250728722 0.0924737374097957 -2.73339684290104 -2.68444542490908 -2.70986979025426 0.482625943331886 0.226119814296893 -0.0833381376650321 -0.093673534359587 -0.368166053482549 -0.250708992538474 -0.072800358652096 0.23191146750244 0.543212435184156 0.511246312588602 1.36279109293975 1.13476304797037 1.08261069722412 0.402247452198698 0.619256224040553 0.116983555923476 0.396999301587504 -2.4048164238257 -0.136504036242276 0.0778939867857591 0.180183346881142 0.124320470982778 -0.101638833767655 -2.33640172839388 0.086264696360366 0.0738971316413537 -0.0301213783860617 0.0617965379407952 0.128163822873346 0.116860577854638
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54229 -0.317298107748363 -0.283474451592446 -0.0171486884151848 0 0.00170539442802942 -0.0437717903194219 0.259035201997436 -0.298492344413943 -0.0781099071277943 0.330315004440972 0.0989375103007781 0.0364234352173129 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -2.43890064484987 -2.40946590336035 -2.4914149287006 0.227487425806419 0.150300790234049 0.00547213971007155 -0.113166927962378 -0.255870287459146 -0.263326561243273 -0.323521253041227 -0.088823274155539 0.595595073050735 0.485977442282361 0.85219400950666 0.713731444995328 0.831278897099472 0.507418893511293 0.530450451114307 0.144652159843005 0.280981497876072 -2.37095784551413 -0.10053829990305 0.135614422063394 0.154691882867288 0.142992277489752 -0.10974229608598 -2.52044279798609 0.0836047440067182 0.0846253707731236 0.0600556327645163 0.0840110944077394 0.158709535550525 0.218614839996961
[+] Show/hide bicluster #108 motif PSSM #1. bicluster 108 motif PSSM #1 Phaeodactylum tricornutum 15x4
POSITION A C G T
1 0.357143 0.571429 0.071429 0
2 1 0 0 0
3 0.714286 0.214286 0.071429 0
4 0 0.214286 0.142857 0.642857
5 0.428571 0.142857 0.214286 0.214286
6 0.357143 0 0.071429 0.571429
7 0.285714 0.142857 0.071429 0.5
8 0.571429 0.142857 0.285714 0
9 0 0.071429 0.928571 0
10 0.714286 0 0 0.285714
11 0 0 0 1
12 0.571429 0.285714 0 0.142857
13 0 0.142857 0.857143 0
14 0.142857 0.571429 0.071429 0.214286
15 0 0 0 1 [+] Show/hide bicluster #108 motif PSSM #2. bicluster 108 motif PSSM #2 Phaeodactylum tricornutum 11x4
POSITION A C G T
1 0.714286 0 0 0.285714
2 0.142857 0.642857 0 0.214286
3 0 0 0 1
4 0 0.071429 0 0.928571
5 0.071429 0 0 0.928571
6 0 0 0 1
7 0 0 0 1
8 0 0.928571 0.071429 0
9 0.214286 0.071429 0.214286 0.5
10 0 0.357143 0.428571 0.214286
11 0 0.142857 0.5 0.357143 |