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[+] Show/hide bicluster #113 rows and columns.
bicluster 113
Phaeodactylum tricornutum
24x71
[+] Show/hide bicluster #113 rows (genes).
bicluster 113 genes
Phaeodactylum tricornutum
24
[+] Show/hide bicluster #113 rows (short gene names).
bicluster 113 short names
Phaeodactylum tricornutum
24
short_name
[+] Show/hide bicluster #113 rows (long gene names).
bicluster 113 long names
Phaeodactylum tricornutum
24
long_name
[+] Show/hide bicluster #113 rows (NCBI RefSeq gene IDs).
bicluster 113 NCBI RefSeq IDs
Phaeodactylum tricornutum
0
[+] Show/hide bicluster #113 gene upstream sequences.
bicluster 113 upstream sequences
Phaeodactylum tricornutum
24
upstream
[+] Show/hide bicluster #113 columns (arrays; conditions).
bicluster 113 arrays
Phaeodactylum tricornutum
71
[+] Show/hide bicluster #113 ratios.
bicluster 113 ratios
Phaeodactylum tricornutum
24x71
GENES GSE12015_Si_free_11v18_1 GSE12015_Si_free_22v19_2 GSE12015_Si_free_23v20_1 GSE12015_Si_free_23v20_2 GSE17237_highlight_12hr_3 GSE17237_highlight_24hr_1 GSE17237_highlight_24hr_3 GSE17237_highlight_30min_2 GSE17237_highlight_48hr_2 GSE17237_highlight_48hr_3 GSE17237_highlight_6hr_1 GSE17237_highlight_6hr_2 GSE31131_Cadmium_0.12mg_3 GSE31131_Cadmium_1.2mg_1 GSE31131_Cadmium_1.2mg_3 GSE34988_Cadmium_1 GSE34988_Cadmium_2 GSE34988_Cadmium_3 GSE34988_Cadmium_4 GSE34988_Cadmium_5 GSE34988_Control_5 GSE34988_Copper_2 GSE34988_Copper_3 GSE34988_Copper_4 GSE34988_Dispersant_1 GSE34988_Dispersant_2 GSE34988_Dispersant_3 GSE34988_Dispersant_5 GSE34988_Mixture_1 GSE34988_Oil_1 GSE34988_Oil_2 GSE34988_Oil_4 GSE34988_Salinity_15ppt_1 GSE34988_Salinity_15ppt_2 GSE34988_Salinity_15ppt_3 GSE34988_Salinity_15ppt_5 GSE34988_Silver_2 GSE34988_Silver_3 GSE34988_Silver_4 GSE34988_Simazine_1 GSE34988_Simazine_3 GSE34988_Simazine_4 GSE34988_Simazine_5 GSE42039_Dark_treated_48h_1 GSE42039_Dark_treated_48h_2 GSE42039_Dark_treated_48h_3 GSE42039_light_0.5h_2 GSE42039_light_0.5h_3 GSE42039_light_6h_3 GSE42514_dark_8hr_light_3hr_1 GSE42514_dark_8hr_light_3hr_2 GSE42514_light_0.5hr_1 GSE42514_light_10.5hr_1 GSE42514_light_10.5hr_2 GSE42514_light_16hr_dark_30min_1 GSE42514_light_16hr_dark_4hr_1 GSE42514_light_6hr_1 GSE42514_light_6hr_2 GSE55959_BlueLight_0.5h_rep1 GSE55959_BlueLight_0.5h_rep2 GSE55959_BlueLight_24h_rep2 GSE55959_BlueLight_6h_rep1 GSE55959_BlueLight_6h_rep3 GSE55959_GreenLight_6h_rep2 GSE55959_RedLight_0.5h_rep3 GSE55959_RedLight_24h_rep1 GSE55959_RedLight_24h_rep2 GSE55959_RedLight_24h_rep3 GSE55959_RedLight_6h_rep1 GSE55959_RedLight_6h_rep2 GSE55959_RedLight_6h_rep3
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49377 0.831668918085238 0.344694918400536 0.559117696580828 0.291608227813714 0.704412113258984 0.794698041836337 1.19182504200552 0.223443730805473 0.497314705232292 0.681590767780459 0.787637610846186 -0.932950471442149 0.926385657597602 0.649086291309422 0.700832468815504 0.0976500757409772 -0.14384283675035 -0.731673689347217 -0.488761078599805 -0.488734120051345 0.504865356221169 -0.48378049418616 -0.71308993704439 -0.909657347905553 -0.191826976993339 0.042705276840194 -0.072267149154793 -0.331010107234404 0.073252885958357 -0.90573723686546 0.219645144295059 -0.98118499056326 -0.594860983641645 -1.08315785027251 -0.789196825769169 -0.964663018556297 0.524997682877257 0.805815844101984 0.871576262875211 -1.08157963337889 -1.24686578595519 -1.20404440051519 -1.4210168227121 -0.885317385027702 -1.04482992773323 -0.920103131190111 -2.03926236935427 -2.17116980504861 0.456922043486646 1.60734501337522 1.44930615081109 0.789852681381563 1.06377103645074 0.434486297762643 0.585876927096468 0.448187142909981 1.7550853952368 0.995935963156505 -2.17328099824037 -2.38591370262103 0.410550044529112 -0.0625016974944097 -0.160404839501868 -0.592275276404469 -2.79035006947869 -0.066236957802111 -0.271330511835509 0.217852043339409 0.0476354068469389 -0.406984919698609 -0.44271589092894
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54068 -0.0385175569896673 -0.300616115346347 0.255659477674423 0.309620945571387 0.455667534099339 0.625683458528619 0.712859826273497 0.375734933911321 -0.199740497525691 0.198796026688255 0.456588236103433 -0.778441183518573 -0.00689912084635442 -0.430703040235464 -0.362781218385802 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -1.37495094324959 -1.15108225218252 -1.19491221748895 -2.51033104697667 -2.37280781979147 0.457341868543702 1.28426202569327 0.972264132809914 0.837621975205215 0.916169233183849 0.246494351495254 -0.0446166877929287 -0.0808299962707163 1.5029913627339 0.378711970203473 -2.13850427963696 -2.00570448390875 0.0834156300166362 -0.0313421458091198 0 -0.0749083720070351 -2.70684674395285 -0.132941933313325 0.0133308171986302 -0.276001816427267 -0.707691366691355 -0.59916202192053 -0.350533886333975
54197 0.463805050464129 -0.462340042853062 0.439844041300692 0.663619031227051 0.778358928063686 1.42857529055278 1.50323362797402 -0.251691518816238 0.774593924276005 1.14283713092977 0.963019133205244 -0.916088631598059 0.681241832575255 -0.455760141380181 -0.114986669057781 -0.221260536601939 -0.30856524463172 -0.901331024697747 -0.883620713576945 -0.561458319634611 0.19988433822786 -0.157069128484882 -0.500349682867372 -0.796802684896764 0.133589695233418 0.0523194840188074 0.131212210979411 -0.10654354857363 0.641752152278409 -0.635433934979975 0.268471112194537 -0.780060711081068 -0.094798038984824 -0.773576132753337 -0.12907863808175 -0.302896278220252 0.387320295016344 0.58809412880356 0.547175840530349 -1.10785846351506 -0.998763780437331 -1.18940475764438 -1.15419342960891 -0.964498335646866 -0.840443750637835 -0.756564668484728 -2.75738801553683 -2.87622024117892 0.643202909010027 1.54350069249034 1.31987044682485 0.998353034463484 1.73375754597365 0.885192463056594 1.17816036293286 0.323540536908651 2.07838412746461 0.924107395485685 -2.57877221612972 -2.81986500126228 0.335569512329755 -0.125442219049867 -0.128508622400393 -0.492969177357839 -1.85441393856961 -0.10477850358706 -0.281457723279302 0.0816584302025703 -0.362144551493274 -0.26259874354331 -0.0831181139481026
6554 -0.0896655487177539 0.0344877654913964 0.000147487093120802 0.172949529033162 0.279906288444406 0.735365143050561 0.769333401766189 0.196409882688907 0.411907236787521 0.546961388088227 0.219737057700863 -0.305241048962724 0.0358184512793296 -0.147824992655039 -0.124147810959407 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -1.81665752972787 -2.10188996313567 -2.07922723071124 -2.55134573009688 -2.58986583825814 -0.012316614178978 0.532768376317004 0.822831232084615 1.05991664113292 0.00642157673864951 0.452243981739643 0.568027407228388 0.347492310652352 0.40363658944844 0.8552012685095 -2.47949593888631 -2.65468190302928 -0.101890118252755 -0.0153348807694017 0.0476767233430203 0.0204318585367287 -2.42094096467833 -0.244412668893815 -0.209354115054085 -0.19405795522041 -0.0584032713932814 -0.101890118252755 -0.130502245951321
7525 0.209937051405994 -0.210359645729476 0.104475149541744 -0.056044068736932 0.830095684401632 1.60223577435591 1.78854663128168 -0.149862511362273 1.17829831524064 1.4342062728452 0.812333883944274 -0.966905332400733 0.378846694524165 -0.31776794004725 -0.163584190432038 -0.58393843622749 -0.222528136772036 -0.641691808617558 -0.488085117837506 -1.22043884843554 -0.0105315544159366 -0.127875106652644 -0.45896056903216 -1.16166373632565 0.367138885883512 0.14857622070278 0.429774403770217 -0.153636359089265 1.58386865146755 -0.362155453100575 0.415341120517624 -0.951723744805054 -0.262195529674788 -1.08582115080024 -0.547295085815179 -0.530229520019364 0.3430959218876 0.860906027943948 0.789583733396235 -0.835489301270226 -0.84406757624514 -1.09401658743956 -1.22836279822308 -1.97979674119778 -2.07771887321958 -1.92867776928075 -2.20695047838196 -2.60780857056606 -0.273040226700217 1.49264911238667 1.42049786459837 1.18537418757855 1.02786440207427 0.497509408015084 0.488154581044806 0.177066516154688 1.67628803007427 0.85802241092256 -1.79872164442223 -2.44248289636674 0.244803295760393 -0.27671130243046 -0.531039455904766 -0.652748286237352 -1.78512308364272 0 -0.0283602813196256 -0.00915156718828538 -0.384396319385682 -0.518561930648975 -0.128968666901431
9956 0.150423204826268 -0.230584893802902 0.277191148917304 0.203947447886927 0.638666420161113 0.714420830750848 0.856460790773074 -0.7770920647747 0.705469605365309 0.713441900515923 0.406927575699138 -0.39400638039515 0.066840873688911 0.0306098910013368 -0.105292387727815 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -2.57598261649064 -2.54357763278878 -2.58069743506403 -2.22875112435396 -2.21546934595282 0.2100379942961 1.2201889530771 1.33847220283107 0.969348858438883 0.683905774803165 0.811711956762579 0.321236840749028 0.187507227420688 1.54832969228508 1.08187040067981 -2.6440682844002 -2.48600868279862 -0.0492560707038378 -0.0329555888030364 0.0394770844383142 -0.165169840455981 -1.70107817143517 -0.205423230630721 -0.350328423555652 -0.323841812266253 -0.00223879983205015 -0.229896217305419 0.0660163325574511
[+] Show/hide bicluster #113 motif PSSM #1. bicluster 113 motif PSSM #1 Phaeodactylum tricornutum 20x4
POSITION A C G T
1 0 0.076923 0.846154 0.076923
2 0.153846 0 0.846154 0
3 0.692308 0.153846 0 0.153846
4 0 0.384615 0 0.615385
5 0.076923 0 0.923077 0
6 0.230769 0.769231 0 0
7 0 0.538462 0.461538 0
8 0.384615 0 0.461538 0.153846
9 0.230769 0.153846 0 0.615385
10 0 0.153846 0 0.846154
11 0 0.153846 0.846154 0
12 0.615385 0.076923 0.307692 0
13 0 0.846154 0 0.153846
14 0.153846 0 0.384615 0.461538
15 0.384615 0 0.307692 0.307692
16 0.076923 0.230769 0.153846 0.538462
17 0.076923 0.230769 0.692308 0
18 0.846154 0 0.153846 0
19 0.769231 0.076923 0.153846 0
20 0.538462 0.230769 0.230769 0 [+] Show/hide bicluster #113 motif PSSM #2. bicluster 113 motif PSSM #2 Phaeodactylum tricornutum 11x4
POSITION A C G T
1 0.375 0.625 0 0
2 0.875 0 0.125 0
3 0.958333 0.041667 0 0
4 1 0 0 0
5 0.875 0 0.125 0
6 0.75 0.041667 0.125 0.083333
7 0 0.833333 0.166667 0
8 0.5 0.291667 0.041667 0.166667
9 0 0.166667 0.083333 0.75
10 0 0.125 0.583333 0.291667
11 0.375 0 0.583333 0.041667 |