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[+] Show/hide bicluster #114 rows and columns.
bicluster 114
Phaeodactylum tricornutum
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[+] Show/hide bicluster #114 rows (genes).
bicluster 114 genes
Phaeodactylum tricornutum
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[+] Show/hide bicluster #114 rows (short gene names).
bicluster 114 short names
Phaeodactylum tricornutum
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short_name
[+] Show/hide bicluster #114 rows (long gene names).
bicluster 114 long names
Phaeodactylum tricornutum
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long_name
[+] Show/hide bicluster #114 rows (NCBI RefSeq gene IDs).
bicluster 114 NCBI RefSeq IDs
Phaeodactylum tricornutum
0
[+] Show/hide bicluster #114 gene upstream sequences.
bicluster 114 upstream sequences
Phaeodactylum tricornutum
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upstream
[+] Show/hide bicluster #114 columns (arrays; conditions).
bicluster 114 arrays
Phaeodactylum tricornutum
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[+] Show/hide bicluster #114 ratios.
bicluster 114 ratios
Phaeodactylum tricornutum
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GENES GSE12015_Si_free_22v19_1 GSE12015_Si_free_22v19_2 GSE12015_Si_free_23v20_1 GSE12015_Si_free_23v20_2 GSE17237_highlight_12hr_2 GSE17237_highlight_12hr_3 GSE17237_highlight_24hr_1 GSE17237_highlight_24hr_3 GSE17237_highlight_24hr_3.1 GSE17237_highlight_30min_1 GSE17237_highlight_30min_2 GSE17237_highlight_30min_3 GSE17237_highlight_48hr_2 GSE17237_highlight_48hr_3 GSE17237_highlight_6hr_1 GSE17237_highlight_6hr_3 GSE31131_Cadmium_0.12mg_1 GSE31131_Cadmium_1.2mg_1 GSE31131_Cadmium_1.2mg_3 GSE34988_Ammonia_1 GSE34988_Ammonia_2 GSE34988_Cadmium_5 GSE34988_Copper_1 GSE34988_Copper_3 GSE34988_Copper_4 GSE34988_Dispersant_1 GSE34988_Dispersant_2 GSE34988_Dispersant_3 GSE34988_Dispersed_oil_2 GSE34988_Dispersed_oil_3 GSE34988_Dispersed_oil_4 GSE34988_Mixture_2 GSE34988_Mixture_3 GSE34988_Mixture_4 GSE34988_Oil_1 GSE34988_Oil_3 GSE34988_Oil_4 GSE34988_Oil_5 GSE34988_Salinity_15ppt_1 GSE34988_Salinity_15ppt_2 GSE34988_Salinity_15ppt_3 GSE34988_Salinity_15ppt_4 GSE34988_Salinity_15ppt_5 GSE34988_Silver_5 GSE34988_Simazine_5 GSE42039_Dark_treated_48h_1 GSE42039_Dark_treated_48h_2 GSE42039_Dark_treated_48h_3 GSE42039_light_0.5h_2 GSE42039_light_0.5h_3 GSE42039_light_24h_3 GSE42039_light_6h_3 GSE42514_light_0.5hr_1 GSE42514_light_0.5hr_2 GSE42514_light_16hr_dark_30min_1 GSE42514_light_16hr_dark_4hr_1 GSE42514_light_16hr_dark_4hr_2 GSE55959_BlueLight_0.5h_rep2 GSE55959_BlueLight_24h_rep3 GSE55959_BlueLight_6h_rep3 GSE55959_GreenLight_0.5h_rep1 GSE55959_GreenLight_0.5h_rep2 GSE55959_GreenLight_0.5h_rep3 GSE55959_GreenLight_24h_rep3 GSE55959_RedLight_0.5h_rep1 GSE55959_RedLight_0.5h_rep3 GSE55959_RedLight_6h_rep1 GSE55959_RedLight_6h_rep2 GSE55959_RedLight_6h_rep3
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44433 0 -0.0159242395146314 -0.214977233447525 -0.215181390364379 -0.824687782494403 0.322821083206613 -0.813099835893756 -1.07350402491052 -1.03452842791387 -0.157496853507211 0.388220709951703 0.597912320821871 -0.166146982074325 -0.758869634069762 0.255579961071498 -0.299063342792284 0.0716672440925157 0.320456946109441 0.134906890657288 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2.21862609746647 2.24785924379938 2.253011581428 2.6064783451406 2.66905392546276 -0.469532515046708 0.604002410882775 -0.0895303637869337 0.740410246568383 -0.595459390949151 -0.441289784910235 0.319842440149683 2.39048622285661 -0.26194759005353 -0.349626098049887 1.95574935969909 2.2154638010881 2.10086806561297 -0.330716161234128 2.00423481756052 2.2595803787258 -0.181989361547009 -0.252896050448952 -0.138771804696803
44454 -0.318318717417794 -0.426136590881377 -0.339505635784001 -0.553123580962002 -0.210958212350689 0.0813203710154965 NA NA NA -0.312195810110058 0.593933937382454 -0.401848983827291 -0.244420091357634 NA NA -0.386217746277112 -0.179726004276569 0.267359450286334 0.0832664287024663 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2.02769604329542 2.23871352520644 2.11006713154912 2.48086403866992 2.61235155992659 -0.307220807797401 0.17607975984004 0.166531792497949 1.33214508134045 0.382903915288199 -0.385954885990308 0.0139388150912632 2.6406414914084 -0.201354886087306 -0.0379035065056894 2.21655640762756 1.92093825781575 1.70286015359324 -0.282373880634599 1.75131079450105 1.8469899647394 -0.0464154692065503 -0.0190202776817579 0.109253385913344
44570 0.231839750542648 0.0205698910726089 -0.0637553986582282 -0.311251646135378 -0.379515555771634 0.609708375565388 -1.09145236290566 -0.90734620597238 -0.609994533588301 -0.218965683745836 0.872163990325474 0.161645796368871 -1.23134406106455 -0.238878020212601 0.268155436088824 0 0.393576873940108 -0.00633200731552856 0.110061246387317 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3.12596926200783 1.92506141971409 2.68421630804048 2.80747376231451 2.4603402854672 0.317742829683837 -0.0748942905075209 0.0731770144624979 -0.243979767814652 -0.0121229712180191 0.586700631468316 0.122328115227002 2.26769802206741 -0.236615618239949 0.0528852046790748 1.73669934751036 1.49611390524325 1.33220082347721 -0.0709773196913386 1.07239157659881 1.30952348483925 -0.047657145175107 -0.0507486737921528 -0.0993764044942361
45091 -0.792209719202079 -0.84421418742848 0.0655718465996736 -0.748677889057508 -0.622219383287198 0.595544123416112 -0.560038984564586 -0.391407192342136 -0.26118274502442 0.538435621145244 0.0911971943981994 0.455479729526119 -0.467500247114979 -0.596713821061553 0.740099015489474 0.148089498318014 0.124690409215472 0.405391830465815 0.24264121771189 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2.0978807864098 2.33451582581668 2.2682271330905 3.164107973496 2.37688081859283 -0.0950206698148919 0.0351403516039592 -0.0463753282085104 0 0.0650791755346232 -0.359272153653273 -0.295274306294474 2.23201104732701 -0.345332776276828 -0.251186125343875 1.94567090668413 1.71675525382067 1.24567839731011 -0.615875061249766 1.62039927742296 1.67451381446192 0.0412837704633215 0.342616473181394 0.850458379565827
45109 -0.246396660407802 -0.188125204230198 -0.648527402544329 0.00342057251202099 -0.872687886392686 0.307609112661322 -1.09320784659272 -1.33685753627949 -0.770666682473028 0.678094415477637 0.862924551131666 0.197141432321464 -0.388203999159218 -0.929202544708302 1.09906818492863 -0.301021823485975 0.299223215477743 0.652504015093898 0.690115066858432 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2.09321685022058 2.09447751794903 2.0332358522152 2.74185074158095 2.67969315352928 -0.582297206888625 0.816021456329828 0.0503435027205713 0.601050722862012 -0.702089181570012 -0.355953010252017 -0.412911606188478 2.56936247509052 -0.107621594981229 -0.241679943601751 1.75025938603144 1.43435287683303 1.67350523786381 -0.3479018037786 1.54533408576461 1.47142561048403 -0.123272455595854 -0.225271555439233 -0.0374567155752025
45479 0.0180469208575982 -0.265231743930441 -0.109922127444774 -0.145616758128521 -1.07353665576391 0.294714484366871 -0.686223331737289 -1.06889635377502 -0.762074421940252 0.636122234953508 0.688061719899497 -0.265186176316803 -0.424175377603806 -0.65223368926386 0.566415177989512 -0.502008659000058 0.215464809646679 0.246314084080164 0.0850085290998541 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2.17716227884171 2.18634483379657 2.13437773557807 2.86336529886331 2.8222240071374 -0.200035315082436 0.823695817386402 0.150870055218084 -0.0504786988578696 -0.550644223605491 -0.366566274925456 -0.722566625950227 2.72789068742534 -0.436755530517185 0.103211541647973 2.16784741861027 1.88271530789646 1.48437526159576 -0.347920843409426 0.831636416040818 0.95249241644823 0.0496754969498521 -0.0130105950967689 0.403961817314932
46265 -0.182650310862425 -0.0150372728176429 -0.500898342150039 -0.493312407238529 -1.15224477540204 0.12047642350158 -0.596134336439104 -1.22670614508344 -1.06860442447771 0.498400476093069 0.163011844255401 0.161953425717748 -0.46185606380547 -0.737745679487197 0.388877637720661 -0.398773596491331 0.166851772260608 0.30706513587501 0.540267612104686 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2.49406884928671 2.52484239776951 2.39901773435594 2.60008735021416 2.39843214844724 -0.285543476644003 -0.0409315229805519 0.777249745658764 1.12716441660337 -1.11208011177293 -0.785182642084809 -0.263648528877476 1.6971547013418 -0.37383091964641 -0.534076625068047 1.2879161010075 1.38654895989061 1.12293609632583 -0.440724232905419 1.5578223697631 1.7772879218659 0.0552202575577358 0.227856386756658 0.217846118182886
46497 -0.30127277010691 -0.197055455026476 -0.310310586048845 -0.325844332199045 -0.661169898184676 0.365068453387042 -0.884971639764315 -1.04850527059866 -0.667425761406984 0.300244718543515 0.588113277881544 0.515774034218802 -0.64527746371428 -0.962643194832798 0.581880715278461 0.373315460434057 0.139142825061048 0.523481596626783 0.437865236481844 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2.36297240850314 2.53520357371509 2.56230042419381 3.01681631070682 2.34427442465346 -0.172254876786929 0.15375178211156 -0.191422780460494 0.760736323932005 -0.258909114885158 -0.469601695658615 -0.00461751490943906 2.13967029665852 -0.0880243918474683 -0.323555710307387 2.15331434087702 1.88816543068447 1.74449978167188 -0.313067294855168 1.56006100619904 1.77419865108473 0.109736779112185 -0.0646408941524423 0.151803808688582
47901 -0.652311771256772 -0.396206252620868 -0.200340607320022 -0.0220305822482498 -0.368131029368255 0.349663205342964 -0.636979862923381 -0.686923881335858 -0.519766838527263 1.03315857731644 1.26630754079397 0.0265743898369514 -0.561125814419876 -0.583517835908136 0.337109215739938 0.0242233136376459 -0.0397789700719961 0.0226570769309344 0.228701539686167 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2.00859666077361 2.29002166332796 1.91747384564471 2.75671245377235 3.03789597513826 -0.180566896995144 0.258737365006545 1.02412873546221 0.991842974904453 -1.20088655429917 -1.32490768381989 -0.9756570561493 2.10298672031469 -0.405834056586928 -0.200805159524704 2.4367398265992 2.14921540521583 1.84784448637476 -0.513854048747141 1.48098632060056 0.933730422075442 0.0379632963361478 0.146312291228335 0.140415344287386
49521 -0.103766996423333 -0.364051760292966 -0.561707945468741 -0.829125137177144 0.246538777220671 0.55577739923191 -0.836140319626784 -0.375279960392027 -0.506227427332205 0.620711803912 1.09985462749183 0.489451682600806 -1.06533942265829 -0.628186081105715 0.350226691188017 0.0906688487309928 0.0383109661249647 0.0168706926326404 -0.616062907869625 -1.72713412046597 -1.89752008333851 2.20079894221331 -0.482613650674139 -0.281022510921984 0.259497156128273 -0.275375918266946 -0.223850176993912 -0.481307322089345 -0.582528666641961 -0.388151346477709 -0.942051706093354 -0.763903883510506 -0.727180360890654 -1.99879536077012 -0.890316865485166 -1.10892728339263 -0.662496157870969 -0.487403144361017 -0.755870073120101 -0.0517853265880854 -0.592828713158869 -0.307442199998858 -0.406828087525534 0.546422847215891 0.127705698254439 2.20806578398588 2.32155023990727 2.29285881309167 3.18782563619436 3.10741973072255 0.264205133447036 -0.45473813876708 0.489218455346558 0.705181091694339 -0.0969986562982625 -0.38654006640943 0.232562495346014 2.57755373569545 -0.163316109898505 -0.405753545597293 2.11455849238199 2.33945748875723 1.72556195574325 -0.00786062641823847 0.954488706050238 1.26702021450485 0.390986196180802 0.091571314793365 0.521179225118614
8996 -0.231240466347105 -0.350927892897474 -0.286323884248127 -0.264789214698345 -1.34513371624986 0.229875745704079 -1.08208886110293 -1.2420370524821 -0.939876170203486 0.276404232775534 0.300432390378449 -0.32051867268586 -0.648709303431862 -1.19855288764279 0.438118267057794 -0.0285788246177654 -0.0784259176072087 -0.191321989423772 -0.324401713626784 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2.09338924763472 2.3239933507757 2.29821415565838 2.46333485159068 2.73987781148118 0.0037077241926723 0.933390961157138 -0.200512642719293 -0.139643948871163 -0.297871381819467 -0.360319622108869 -0.451445146344544 2.44201307807873 -0.326589712091539 0.115853317388178 2.12934447033131 2.02178030725742 1.67314317874803 -0.126652898427711 1.65627119790533 1.83363056540486 0.0703950502304495 0.104119076576571 0.344084885517944
[+] Show/hide bicluster #114 motif PSSM #1. bicluster 114 motif PSSM #1 Phaeodactylum tricornutum 24x4
POSITION A C G T
1 0 0.384615 0.538462 0.076923
2 0.384615 0.230769 0 0.384615
3 0.307692 0.076923 0 0.615385
4 0.461538 0.153846 0.307692 0.076923
5 0.076923 0.153846 0.153846 0.615385
6 0 0.153846 0 0.846154
7 0 0 0.307692 0.692308
8 0.615385 0.153846 0.076923 0.153846
9 0 0.384615 0 0.615385
10 0.153846 0 0 0.846154
11 0 0 0.230769 0.769231
12 0.076923 0.923077 0 0
13 0 0.076923 0.230769 0.692308
14 0 0.692308 0 0.307692
15 0 0.769231 0 0.230769
16 0.538462 0 0.384615 0.076923
17 0.076923 0 0.076923 0.846154
18 0.461538 0.538462 0 0
19 0.076923 0 0.923077 0
20 0.230769 0.076923 0.692308 0
21 0.076923 0.461538 0.307692 0.153846
22 0.615385 0 0 0.384615
23 0 0 0.384615 0.615385
24 0 0.461538 0.076923 0.461538 [+] Show/hide bicluster #114 motif PSSM #2. bicluster 114 motif PSSM #2 Phaeodactylum tricornutum 15x4
POSITION A C G T
1 0.035714 0.25 0.428571 0.285714
2 0 0 0 1
3 0 0.071429 0.535714 0.392857
4 0.107143 0.214286 0.392857 0.285714
5 0.107143 0 0.142857 0.75
6 0 0 0.785714 0.214286
7 0.035714 0 0 0.964286
8 0.535714 0.214286 0.214286 0.035714
9 0.107143 0.142857 0.535714 0.214286
10 0.285714 0.571429 0 0.142857
11 0 0 0.035714 0.964286
12 0.25 0.392857 0.321429 0.035714
13 0 0.071429 0 0.928571
14 0 0.214286 0.25 0.535714
15 0.045266 0.079734 0.651163 0.223837 |