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[+] Show/hide bicluster #118 rows and columns.
bicluster 118
Phaeodactylum tricornutum
24x69
[+] Show/hide bicluster #118 rows (genes).
bicluster 118 genes
Phaeodactylum tricornutum
24
[+] Show/hide bicluster #118 rows (short gene names).
bicluster 118 short names
Phaeodactylum tricornutum
24
short_name
[+] Show/hide bicluster #118 rows (long gene names).
bicluster 118 long names
Phaeodactylum tricornutum
24
long_name
[+] Show/hide bicluster #118 rows (NCBI RefSeq gene IDs).
bicluster 118 NCBI RefSeq IDs
Phaeodactylum tricornutum
0
[+] Show/hide bicluster #118 gene upstream sequences.
bicluster 118 upstream sequences
Phaeodactylum tricornutum
23
upstream
[+] Show/hide bicluster #118 columns (arrays; conditions).
bicluster 118 arrays
Phaeodactylum tricornutum
69
[+] Show/hide bicluster #118 ratios.
bicluster 118 ratios
Phaeodactylum tricornutum
24x69
GENES GSE12015_Si_free_23v20_1 GSE12015_Si_free_23v20_2 GSE17237_highlight_30min_2 GSE17237_highlight_3hr_3 GSE17237_highlight_6hr_1 GSE31131_Cadmium_0.12mg_1 GSE31131_Cadmium_0.12mg_3 GSE31131_Cadmium_1.2mg_1 GSE31131_Cadmium_1.2mg_2 GSE31131_Cadmium_1.2mg_3 GSE34988_Ammonia_4 GSE34988_Cadmium_1 GSE34988_Cadmium_2 GSE34988_Cadmium_3 GSE34988_Cadmium_4 GSE34988_Cadmium_5 GSE34988_Control_2 GSE34988_Control_3 GSE34988_Control_4 GSE34988_Copper_3 GSE34988_Dispersant_1 GSE34988_Dispersant_2 GSE34988_Dispersant_4 GSE34988_Dispersant_5 GSE34988_Dispersed_oil_1 GSE34988_Dispersed_oil_2 GSE34988_Dispersed_oil_3 GSE34988_Dispersed_oil_4 GSE34988_Mixture_3 GSE34988_Mixture_4 GSE34988_Oil_1 GSE34988_Oil_2 GSE34988_Oil_3 GSE34988_Oil_4 GSE34988_Oil_5 GSE34988_Salinity_15ppt_2 GSE34988_Salinity_15ppt_3 GSE34988_Silver_2 GSE34988_Simazine_5 GSE42039_light_0.5h_3 GSE42039_light_24h_1 GSE42039_light_24h_2 GSE42039_light_6h_3 GSE42514_dark_8hr_light_3hr_1 GSE42514_dark_8hr_light_3hr_2 GSE42514_light_0.5hr_2 GSE42514_light_10.5hr_1 GSE42514_light_10.5hr_2 GSE42514_light_15.5hr_1 GSE42514_light_15.5hr_2 GSE42514_light_16hr_dark_30min_1 GSE42514_light_16hr_dark_4hr_2 GSE42514_light_16hr_dark_7.5hr_2 GSE42514_light_6hr_1 GSE42514_light_6hr_2 GSE55959_BlueLight_24h_rep1 GSE55959_BlueLight_24h_rep2 GSE55959_BlueLight_24h_rep3 GSE55959_BlueLight_6h_rep1 GSE55959_BlueLight_6h_rep2 GSE55959_BlueLight_6h_rep3 GSE55959_GreenLight_24h_rep1 GSE55959_GreenLight_24h_rep2 GSE55959_GreenLight_24h_rep3 GSE55959_GreenLight_6h_rep3 GSE55959_RedLight_0.5h_rep3 GSE55959_RedLight_24h_rep2 GSE55959_RedLight_6h_rep1 GSE55959_RedLight_6h_rep2
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45001 -0.365922819840683 0.0959164511418386 0.777620725608589 -0.287377682227451 1.03576674521541 0.647532554723915 -0.749917335661389 -0.14496199325129 -0.29609508290785 -0.200878482111206 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 1.69524030143577 0.266433118657466 0.397801731044146 -1.12698184432892 -1.32774388397305 -1.31606949478266 0.102233552475192 -1.16788628707779 -0.825598697054122 -0.102350244900955 -0.137033260213772 -0.495210374724655 -0.0789524073152008 -0.298437279283395 -2.60417298791922 -1.30544505508946 0.420004957634783 0.362747955582578 0.407786445548709 -0.853536274483146 -0.726808384806456 -1.0647911936183 0.324698007974948 0.474091954776858 0.358175931973447 -0.79661489444109 0.908724677304882 0.249848994713468 -1.65337553040267 -1.63041363270219
46145 -0.35159227810041 -0.488030511025636 0.656616352717494 -0.0454609662546627 0.93610650216726 -0.659545773288365 -1.18358585694623 -1.00334080295369 -0.671610972398282 -0.675823643788436 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 1.43492754581016 -0.0173397309436247 0.443703677070304 -0.931604585438856 -2.00920709100296 -1.9938322283436 0.627170272855409 -1.21158744955476 -0.982730383813696 0.688588190050107 0.22233068701248 0.233245600539372 -0.500261760577244 -0.830732091565803 -2.67296853230186 -1.68006428445328 0.357085723456837 0.581898535817603 0.668371442773639 -1.41277724142631 -0.668637998152465 -1.05326621084152 0.254011877016231 0 0.380831522236426 -1.14149838268686 0.845200373307259 -0.0569080679821582 -1.60142711616734 -1.40594077179968
47549 -0.0148892274093653 -0.317176614951941 0.601734274273221 0 0.760805547583265 -0.295046733093637 -0.577109068938866 -0.201138928942672 -0.427539755021009 -0.246181847783706 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.772170648278683 0.0862878742052796 0.53936031182945 -1.08949528932222 -2.17367146566219 -2.30986298477141 -0.0439566342167045 -2.04243648759554 -2.54128387198008 -0.0876097527112631 -1.10132458212655 -0.114984259957456 -0.718706242542427 -0.685017018884802 -3.06660413065119 -2.53911455893554 0.320348188530413 0.762691330076898 0.739835803286248 -1.56113431994598 -1.01924538198798 -1.44331839334805 0.489445329295734 0.207236557200927 0.544752894940045 -1.13742676223291 0.521870058038001 0.0808343442616348 -1.29137070621092 -1.41552528505425
50848 -0.199575895899197 0.166784934532558 1.02754995622077 0.427582725684093 0.828435434298744 -0.0646338253195115 -0.254241843340159 -0.447393187039538 -0.303482543189571 -0.335395027290449 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 1.97278233151281 0.198232156099088 0.13039215020299 -0.586603664625129 -1.54997660433261 -1.00510069027884 0.939112199821219 -1.94310343605125 -1.65763769371991 -0.732302729540488 0.104478248879839 -0.0781558417767803 -0.0449338873474657 0.168494087185026 -3.45543859609953 -0.800043344552127 0.183585944321783 0.354985877915628 0.45975596329614 -1.23024578909185 -1.05259562667832 -0.861439399211194 0.216025179579729 0.0234758639768344 0.262028836121732 -0.750734435030807 0.746960502192489 -0.276021717441636 -1.90049055798733 -1.73683263551651
5424 -4.24547260457532e-05 -0.209376911613063 0.708536720221641 0.214641297642733 1.17731636230498 -0.63712133951641 -0.270302709236841 -0.573272697291791 -0.366802301538783 -0.210493797482881 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2.07988706118397 0.636173317381431 0.736278922218079 -0.232123767916773 -2.20227606280517 -2.00038502090428 0.354812406607072 -1.36419122885433 -1.08806966777575 0.252271649565489 -0.249128631452757 -0.0920692481004843 -0.531516993375162 -0.414014740609082 -2.91217089059669 -1.67585413785259 0.51223875384262 0.364622241806118 0.272672714662355 -0.830055659924899 -0.752556941658904 -0.784932616087418 0.0946993645102767 0.402457218286357 0.0265403620175485 -0.54083145365505 1.49433522058096 0.150948422616787 -0.876944943060193 -0.916257274164725
7426 -0.31704931351846 0.494130368226096 1.03094045173352 0.781526557823005 1.1713222531272 -0.977911568224965 -0.259057919015702 -0.731365963254474 -0.546061773341702 -0.815781668435759 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 1.47713500889847 0.649843123458721 0.628347169704194 -0.653391498615066 -2.72208315211381 -1.8041303871235 -0.113515348568436 -1.05873637264277 -2.01667660636732 -0.425699979700965 -1.34181139238502 -0.277310603410178 -1.05591701329732 -0.558346592812183 -2.22171870439863 -2.19379126496438 0.247465011478961 0.272120250939004 0.10201254698348 -1.22439056537968 -0.184542472872269 -0.733427847528156 0.0392874898491329 0.347249266493009 -0.0809051004424334 -0.971217647228684 1.21905418249774 -0.443090906555277 -1.15418720090119 -0.858399779892562
9893 0.247227712484154 0.093973678601409 1.06746378277844 0 0.942009642210142 -0.372489932390204 -0.492953959180129 -0.582980463609323 -0.422762905422044 -0.518437915671488 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 1.32806116102885 0.288350589827424 0.685048850591678 -1.45400340098956 -2.35641725791341 -1.84012992368518 0.689487787171978 -2.01706056777143 -1.8180837540302 -0.296119051989762 -0.409163524430169 -0.204823996570535 -0.423464632161963 -0.323703999457432 -3.2112024642333 -1.55860603839085 0.720599189107298 0.567802325006201 0.633517006124772 -1.64013203454241 -1.09582539464728 -1.30104255266528 0.236014907191033 0.650646468625817 0.327130760163016 -1.27399170563081 0.694234420757876 0.0747248381287851 -1.57813186868571 -1.44255516050376
[+] Show/hide bicluster #118 motif PSSM #1. bicluster 118 motif PSSM #1 Phaeodactylum tricornutum 20x4
POSITION A C G T
1 0.125 0 0.875 0
2 0 0.625 0.375 0
3 0.125 0.125 0.125 0.625
4 0 0.375 0 0.625
5 0 0.125 0.875 0
6 0 0 0 1
7 0 0 0.875 0.125
8 0.875 0.125 0 0
9 1 0 0 0
10 0 0 0.875 0.125
11 0.125 0 0 0.875
12 0.625 0.375 0 0
13 0 0 1 0
14 0.125 0.375 0.25 0.25
15 0.625 0.125 0.25 0
16 1 0 0 0
17 0 0.125 0.375 0.5
18 0 0.375 0 0.625
19 0 0.25 0 0.75
20 0 0.75 0.25 0 [+] Show/hide bicluster #118 motif PSSM #2. bicluster 118 motif PSSM #2 Phaeodactylum tricornutum 21x4
POSITION A C G T
1 0 0.125 0.875 0
2 0.125 0.875 0 0
3 0.75 0.25 0 0
4 0.25 0.75 0 0
5 0.75 0.25 0 0
6 0.125 0 0.75 0.125
7 0.125 0.125 0.75 0
8 1 0 0 0
9 0.375 0.25 0 0.375
10 0.25 0 0.125 0.625
11 0 0 0.25 0.75
12 0 0.5 0.5 0
13 0 0 0.125 0.875
14 0 0.25 0 0.75
15 0 0 1 0
16 0.125 0.875 0 0
17 0.25 0.75 0 0
18 0.5 0 0.5 0
19 0.875 0 0.125 0
20 0.375 0 0.625 0
21 0.875 0.125 0 0 |