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[+] Show/hide bicluster #121 rows and columns.
bicluster 121
Phaeodactylum tricornutum
16x67
[+] Show/hide bicluster #121 rows (genes).
bicluster 121 genes
Phaeodactylum tricornutum
16
[+] Show/hide bicluster #121 rows (short gene names).
bicluster 121 short names
Phaeodactylum tricornutum
16
short_name
[+] Show/hide bicluster #121 rows (long gene names).
bicluster 121 long names
Phaeodactylum tricornutum
16
long_name
[+] Show/hide bicluster #121 rows (NCBI RefSeq gene IDs).
bicluster 121 NCBI RefSeq IDs
Phaeodactylum tricornutum
0
[+] Show/hide bicluster #121 gene upstream sequences.
bicluster 121 upstream sequences
Phaeodactylum tricornutum
16
upstream
[+] Show/hide bicluster #121 columns (arrays; conditions).
bicluster 121 arrays
Phaeodactylum tricornutum
67
[+] Show/hide bicluster #121 ratios.
bicluster 121 ratios
Phaeodactylum tricornutum
16x67
GENES GSE12015_Si_free_11v18_1 GSE12015_Si_free_11v18_2 GSE12015_Si_free_22v19_1 GSE12015_Si_free_22v19_2 GSE12015_Si_free_23v20_1 GSE12015_Si_free_23v20_2 GSE17237_highlight_12hr_1 GSE17237_highlight_12hr_2 GSE17237_highlight_12hr_3 GSE17237_highlight_24hr_1 GSE17237_highlight_24hr_3 GSE17237_highlight_30min_1 GSE17237_highlight_30min_2 GSE17237_highlight_30min_3 GSE17237_highlight_3hr_1 GSE17237_highlight_3hr_2 GSE17237_highlight_3hr_3 GSE17237_highlight_48hr_3 GSE17237_highlight_6hr_1 GSE17237_highlight_6hr_3 GSE31131_Cadmium_1.2mg_1 GSE31131_Cadmium_1.2mg_2 GSE31131_Cadmium_1.2mg_3 GSE34988_Ammonia_2 GSE34988_Cadmium_1 GSE34988_Cadmium_5 GSE34988_Dispersant_5 GSE34988_Dispersed_oil_4 GSE34988_Oil_3 GSE34988_Oil_5 GSE34988_Silver_4 GSE34988_Simazine_5 GSE42039_Dark_treated_48h_1 GSE42039_Dark_treated_48h_2 GSE42039_Dark_treated_48h_3 GSE42039_light_0.5h_3 GSE42039_light_24h_1 GSE42039_light_24h_2 GSE42039_light_24h_3 GSE42039_light_6h_2 GSE42514_dark_8hr_light_3hr_1 GSE42514_light_0.5hr_1 GSE42514_light_0.5hr_2 GSE42514_light_10.5hr_1 GSE42514_light_10.5hr_2 GSE42514_light_15.5hr_1 GSE42514_light_15.5hr_2 GSE42514_light_16hr_dark_30min_1 GSE42514_light_16hr_dark_30min_2 GSE42514_light_16hr_dark_4hr_2 GSE42514_light_6hr_2 GSE55959_BlueLight_24h_rep1 GSE55959_BlueLight_24h_rep2 GSE55959_BlueLight_24h_rep3 GSE55959_BlueLight_6h_rep1 GSE55959_BlueLight_6h_rep2 GSE55959_BlueLight_6h_rep3 GSE55959_GreenLight_0.5h_rep1 GSE55959_GreenLight_0.5h_rep3 GSE55959_GreenLight_24h_rep1 GSE55959_GreenLight_24h_rep2 GSE55959_GreenLight_6h_rep1 GSE55959_RedLight_0.5h_rep2 GSE55959_RedLight_24h_rep1 GSE55959_RedLight_24h_rep2 GSE55959_RedLight_24h_rep3 GSE55959_RedLight_6h_rep2
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39347 0.248511247921486 -0.021143688947464 0.286537282161216 0.304768942413141 0.224202367585586 0.319701540333765 0.332283122256189 -0.00688826697905395 0.227811802228318 0.076652672992458 -0.127109571028844 0.27586394734516 -0.45817568502066 -1.02385027583144 -0.51855373472925 0.192138954422534 0.0173841500363424 -0.170794365341052 0.244096581617627 0.20211427710323 0.153710955482964 -0.166072365335803 -0.0733274755471112 -1.33028464154326 -0.164790711742542 -0.59006659469732 0.270861468874073 -0.0703068775172783 0.650782806571599 -0.0665702553399313 -0.107106945467725 -0.488968357541373 -1.24946586893137 -1.22116831882083 -1.2475379402481 -2.47080386233867 0.277258284732151 0.434261245965713 0.163211060249895 -0.0798078634159029 0.00730275062922204 -0.688095162609606 -0.353264876833959 0.838476694865277 0.781655419650636 1.09769317561954 1.07647744528059 0.86822667953416 1.10099898817585 0.718719267799894 0.511923365493034 0.0653833162960836 -0.167893426101015 -0.164913835964611 0.599664874904562 0.170787276334671 0.292748397224649 -2.43881596207179 -2.64918686981999 -0.189503123423875 0.309809918844763 0.537459493007179 -2.79388806724659 0.135423127320222 0.3154458340812 0.0269821686036972 0.300515495414428
43221 -0.137812178186872 -0.170994811015063 0.0995517125802988 0.273093068176008 -0.122047249180376 0.0535282908032683 0.804031721175207 0.613892692339191 0.176646029517795 0.858298675184344 0.426354876789246 0.617344448972468 -0.279976239598683 -0.615139901642044 -0.88569913888983 0.106937073273745 0.327457917308814 0.596860212185962 0.421025949375478 0.586960091042931 -0.245360778142241 -0.208394562352491 -0.330327388661045 NA NA NA NA NA NA NA NA NA -1.86785187773127 -1.80776763827351 -1.92482995073867 -2.07474704290802 0.509955144143332 0.495211527778743 0.37148441206608 -0.458716935895152 -0.587280958743503 -0.0794892989265205 -0.023599510274045 0.98796180868659 0.610544632418182 1.60577070163121 1.36365869820165 1.47466441443215 1.42138951697865 0.716699908471389 0.00880102961991405 0.0929664152842461 -0.0543301743116001 -0.0455399536846014 -0.111532553294698 -0.142491919596276 -0.00113024513745066 -2.30607020085558 -2.31335015572226 0.0130515792909604 0.164443190551495 -0.145204208687337 -2.19743818301911 0.235342911709243 0.353004491945625 0.156587778482035 0.153970028730651
44270 -0.315286974617553 -0.503924900604554 -0.0226397812199124 0.15097817292052 -0.247293338623951 -0.0187636594530562 0.680861784007857 0.532580745816774 0.0117252683447399 0.338524324609856 -0.130294218142134 0.571414640768464 -0.410616959371909 -0.656682859436356 -0.581537778782904 0.321640584213725 0.20297473137216 0.263335637586527 0.364140644336567 0.501689670385667 -0.136930461617139 0 -0.0666515288318281 NA NA NA NA NA NA NA NA NA -1.62866673694425 -1.6519325170145 -1.62286429022524 -1.98740236296432 0.274894965629504 0.21718161886444 0.207406838310615 -0.207601754631747 0.15308496158128 -0.154243336222718 0.244739222398428 1.30470836122294 1.16719935789118 1.33859753618585 1.30784163416732 1.35186986288449 1.44678357002878 0.793059081296744 0.698493303281902 -0.239220398715107 -0.194416011830682 -0.19339743614378 0.236863915423345 -0.120455523676419 0.135767476272099 -2.10558485184847 -2.10628582229317 -0.135212464792277 -0.161396565444076 -0.0360512812824031 -2.63155282997689 0.0178890369961089 -0.0297233703823832 0.0582299575221106 0.259766793567248
44511 0 0.0290283926394062 0.0701987140102333 0.182690112551341 -0.00706068460684302 -0.241042793572347 0.229724067202314 0.256425698977927 0.279887578475556 0.576590605880971 0.177217061650892 0.325880796378121 0.164223769446068 -0.481693780368823 -0.841045894971905 0.207938386067708 0.269239004945085 0.225566936090513 0.0903277871206095 0.472830376460915 -0.028219780999099 -0.0887646413377068 0.0685013948131981 NA NA NA NA NA NA NA NA NA -1.51875436637585 -1.78840021421823 -1.80354535007474 -2.51873028457304 0.210331650008851 0.151311277387054 0.44633867912129 -0.396627310047507 -0.0749628131552278 -0.0100351109275866 0.103775929441733 1.04596965497038 0.861552285930753 1.36726929074684 1.14708972624861 1.2162618282692 1.14545387031406 0.811770449206788 0.25638996862607 -0.127563735633409 -0.0224724449748513 0.0370324362373435 -0.00363517231123294 -0.088665439535284 -0.0184150702927684 -2.35666143608582 -2.38035566271365 -0.0390792821428927 -0.405138925661101 -0.121546270986169 -2.34121121450152 0.0883888151597387 -0.0948634659856423 0.240075165119719 0.251535021931065
44577 -0.138575461463622 -0.140719477947533 0.0281549068346586 0.155313612868146 -0.0587704034513474 -0.030924658499801 0.495722021646153 -0.0775424588882645 0.380287115378767 0.551554328434362 0.181079926523691 0.276022270299169 -0.0791443833031576 -0.493557888464368 -0.766022679560602 -0.021568276441367 0.0630679653813219 0.0176126983752462 0.392043472432217 0.398994585627774 -0.360592868160375 -0.246267556596762 -0.397790760076066 NA NA NA NA NA NA NA NA NA -1.81014153403993 -1.85327788296785 -1.90591285883823 -2.17448504645923 0.408997270650716 0.403412763426536 0.286547972947191 -0.288313705249165 -0.342589834131455 -0.148129002904126 -0.138219173879176 0.750718261873854 0.427364422030845 0.881902754634744 0.789285199870851 0.851841449098946 0.783053130933816 0.589545642502422 0.0655073848940007 0.0987650410942654 -0.00272676882121649 0.0288925817758152 0.245641850405297 0.20936497832182 0.251768584275828 -2.59505277379335 -2.66213994618694 0.0606945134070613 0.113964732089492 0.17521663342092 -2.80854941958552 0.246446036968638 0.354247827069679 0.248995669614413 0.000392752000497129
45556 0.0147792724309557 -0.0367006501161258 0.216644457979535 0.195020433234222 -0.0831431578077649 0.0652762847623411 0.451297071048196 -0.0344841875797312 0.403243819240585 0.615284582797158 0.0685223457496773 0.377081206574295 -0.0628276322870968 -0.622378759878553 -1.01711795977763 0.181237574734624 -0.073275967879946 0.166852683727912 0.409371035797681 0.328020471795596 -0.645330942052826 -0.325542332013881 -0.625102649813801 NA NA NA NA NA NA NA NA NA -1.70182524921203 -1.72282042600865 -1.7584197302392 -2.29041395206856 0.442143310046797 0.394291475334021 0.382335680774812 -0.353361788224376 -0.507790645980182 -0.316881879743744 -0.0909285572893057 0.872568915961561 0.646736159090189 0.990868036695836 0.878624159265491 1.00853439636668 1.0167349101334 0.818227730467825 0.125915742728151 -0.0408248766056647 -0.0400448813620066 0 0.145637185578628 0.317790168813625 0.247273561213416 -2.37640788752822 -2.48751333584473 0.0217252649327069 0.110232032661879 0.208130540080439 -2.49555216473258 0.220638769885385 0.257800683348349 0.219491773172933 -0.00464452761505876
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54395 0.0219091333308773 -0.0173247083812388 0.251130380812799 0.223188632198498 0.0167988430238369 0.103426506131892 0.637971938892404 0.218170656813133 0.350117528300543 0.706496810707954 0.217901130211456 0.448626616372466 -0.119378854293579 -0.365408011443431 -0.476978836692075 0.138581182242469 0.207128308548066 0.454797704038404 0.481453637672224 0.495924825885241 -0.141136327395989 -0.101633783322567 -0.0466421141765804 NA NA NA NA NA NA NA NA NA -1.9727265343558 -1.96179788310202 -2.00216217121429 -2.06264723374083 0.00813948095245193 0.0547440803052033 0.231976480636854 -0.340423151393605 -0.97213625426814 -0.0783519665021831 -0.081179487676803 0.946345436074752 0.571564000201479 1.18207172032855 0.998345788922506 1.12860742861415 1.15047415780947 0.719566550416455 0.292148395324886 -0.162890977265198 0.0316445834983742 0.025912592604569 -0.0949583869929875 -0.0341494250941535 -0.100306929160896 -2.4340696287613 -2.42110006696273 0.057433394178648 -0.180684937427416 -0.0437363197446809 -2.65754794299928 -0.040886786208066 -0.125175346561638 0.129008637484494 -0.0817592145803633
[+] Show/hide bicluster #121 motif PSSM #1. bicluster 121 motif PSSM #1 Phaeodactylum tricornutum 11x4
POSITION A C G T
1 0.266667 0 0.533333 0.2
2 0.466667 0 0.133333 0.4
3 0.066667 0.933333 0 0
4 0.533333 0.333333 0.066667 0.066667
5 0 0.066667 0.933333 0
6 0.666667 0 0 0.333333
7 0.933333 0 0.066667 0
8 1 0 0 0
9 0.133333 0 0.6 0.266667
10 0.933333 0.066667 0 0
11 1 0 0 0 [+] Show/hide bicluster #121 motif PSSM #2. bicluster 121 motif PSSM #2 Phaeodactylum tricornutum 24x4
POSITION A C G T
1 0 0.153846 0.384615 0.461538
2 0.769231 0.076923 0.076923 0.076923
3 0 0.538462 0 0.461538
4 0.846154 0.153846 0 0
5 0.230769 0 0.307692 0.461538
6 0 0.538462 0.076923 0.384615
7 0.846154 0 0 0.153846
8 0.846154 0 0.153846 0
9 0.153846 0.692308 0.076923 0.076923
10 0.615385 0.230769 0 0.153846
11 0.692308 0.076923 0 0.230769
12 0.692308 0 0.153846 0.153846
13 0.538462 0 0.384615 0.076923
14 0.692308 0.230769 0 0.076923
15 0 0.076923 0.230769 0.692308
16 0.923077 0 0.076923 0
17 0.307692 0.230769 0.461538 0
18 1 0 0 0
19 0.384615 0.153846 0.076923 0.384615
20 0.538462 0 0.230769 0.230769
21 0 0 0.461538 0.538462
22 0.153846 0 0.615385 0.230769
23 0.153846 0.461538 0.153846 0.230769
24 0.230769 0 0 0.769231 |