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[+] Show/hide bicluster #152 rows and columns.
bicluster 152
Phaeodactylum tricornutum
17x77
[+] Show/hide bicluster #152 rows (genes).
bicluster 152 genes
Phaeodactylum tricornutum
17
[+] Show/hide bicluster #152 rows (short gene names).
bicluster 152 short names
Phaeodactylum tricornutum
17
short_name
[+] Show/hide bicluster #152 rows (long gene names).
bicluster 152 long names
Phaeodactylum tricornutum
17
long_name
[+] Show/hide bicluster #152 rows (NCBI RefSeq gene IDs).
bicluster 152 NCBI RefSeq IDs
Phaeodactylum tricornutum
0
[+] Show/hide bicluster #152 gene upstream sequences.
bicluster 152 upstream sequences
Phaeodactylum tricornutum
17
upstream
[+] Show/hide bicluster #152 columns (arrays; conditions).
bicluster 152 arrays
Phaeodactylum tricornutum
77
[+] Show/hide bicluster #152 ratios.
bicluster 152 ratios
Phaeodactylum tricornutum
17x77
GENES GSE12015_Si_free_11v18_1 GSE12015_Si_free_11v18_2 GSE12015_Si_free_22v19_1 GSE12015_Si_free_22v19_2 GSE12015_Si_free_23v20_1 GSE12015_Si_free_23v20_2 GSE17237_highlight_12hr_1 GSE17237_highlight_12hr_2 GSE17237_highlight_24hr_1 GSE17237_highlight_24hr_3 GSE17237_highlight_24hr_3.1 GSE17237_highlight_30min_1 GSE17237_highlight_30min_2 GSE17237_highlight_30min_3 GSE17237_highlight_48hr_1 GSE17237_highlight_48hr_2 GSE17237_highlight_48hr_3 GSE17237_highlight_6hr_3 GSE31131_Cadmium_0.12mg_1 GSE31131_Cadmium_0.12mg_2 GSE31131_Cadmium_0.12mg_3 GSE31131_Cadmium_1.2mg_1 GSE31131_Cadmium_1.2mg_2 GSE34988_Ammonia_2 GSE34988_Ammonia_3 GSE34988_Ammonia_4 GSE34988_Cadmium_1 GSE34988_Cadmium_2 GSE34988_Cadmium_5 GSE34988_Control_5 GSE34988_Control_6 GSE34988_Copper_1 GSE34988_Dispersant_1 GSE34988_Dispersant_2 GSE34988_Dispersant_3 GSE34988_Dispersant_4 GSE34988_Dispersed_oil_5 GSE34988_Mixture_3 GSE34988_Mixture_4 GSE34988_Oil_2 GSE34988_Oil_3 GSE34988_Oil_5 GSE34988_Simazine_1 GSE34988_Simazine_2 GSE34988_Simazine_3 GSE34988_Simazine_4 GSE34988_Simazine_5 GSE42039_Dark_treated_48h_1 GSE42039_Dark_treated_48h_2 GSE42039_Dark_treated_48h_3 GSE42039_light_24h_1 GSE42039_light_24h_2 GSE42039_light_24h_3 GSE42039_light_6h_1 GSE42039_light_6h_2 GSE42514_dark_8hr_light_3hr_1 GSE42514_dark_8hr_light_3hr_2 GSE42514_light_0.5hr_1 GSE42514_light_0.5hr_2 GSE42514_light_10.5hr_1 GSE42514_light_10.5hr_2 GSE42514_light_15.5hr_2 GSE42514_light_16hr_dark_4hr_2 GSE42514_light_6hr_1 GSE42514_light_6hr_2 GSE55959_BlueLight_24h_rep1 GSE55959_BlueLight_6h_rep1 GSE55959_BlueLight_6h_rep2 GSE55959_BlueLight_6h_rep3 GSE55959_GreenLight_24h_rep2 GSE55959_GreenLight_6h_rep1 GSE55959_GreenLight_6h_rep2 GSE55959_GreenLight_6h_rep3 GSE55959_RedLight_24h_rep1 GSE55959_RedLight_6h_rep1 GSE55959_RedLight_6h_rep2 GSE55959_RedLight_6h_rep3
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47056 0.462858449008614 0.330364419247081 0.310314620671622 0.104442462103 0.459413466435512 0.138754488531103 2.03336537239289 1.87585043420291 1.32627305331234 1.26903811284281 1.60243112433043 1.05998072338709 0.832690419164976 0.0995271609676966 0.543690142110869 0.875592854137369 0.670462744814993 1.13764578850815 -0.216333645208894 -0.0548252832201739 0.221363792641079 -0.0599286804039684 -0.113436838725916 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -3.4491327152397 -3.37109653462441 -3.46929704967176 0.454912239845572 -0.0123810017167998 0.639230394159721 -0.225627365296237 -0.403615188084706 -0.742158884410674 -0.393848977875636 0.507854757823338 0.793273787043028 -1.8920635989588 -1.36054537778913 -0.206142142858232 -0.32020350136495 -1.76244910786848 -0.454477180875495 0.629446588988362 -0.53950313730802 -0.380418246496095 -0.515355302898902 0 -0.5172229663359 -0.0856387140757858 -0.304521686106197 -0.191442731222324 -1.00600778420073 -0.917472917445139 -0.91991921460136
47067 0.0323493502451803 -0.0385670405214846 -0.120694478357879 -0.277388415309223 0.199472168191622 0.327617043418886 1.61003698523419 1.3773438816412 0.737298686379685 1.20935546657216 1.09066958640745 0.649325860745537 0.179360071192576 -0.0855308988626586 0.733699418826251 0.423124735571991 0.768019562570994 0.844884326335237 0.0440492511115556 -0.023950963806855 0.208274143751485 -0.226735340316034 -0.00795957841099699 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -3.42264796186223 -3.33288973474304 -3.40959732312859 0.252124625275476 0.294484674514024 0.251259120750114 -0.170032736593771 -0.292193062960301 -0.175818325379049 -0.15152810381092 0.465116294868147 0.424218269810581 -1.73912852667713 -1.08920059336007 0.0278913546888909 0 -0.951741102580447 -0.507319949999439 0.281727192712161 -0.35071362800536 -0.094707558504946 -0.159433976125037 0.202509809846757 -0.129787606587838 -0.263444632396047 -0.237990512488562 0.106512951808314 -0.238706880080696 -0.248718822011785 -0.264282230349266
48338 -0.0366286716298752 0 -0.124146032089043 -0.0378403070781917 -0.0795951286817136 0.0167764908228436 1.4979933701716 0.880230784547495 0.978199898789294 0.942512574700034 1.1670453997639 0.833254746188997 0.00732946243504679 -0.0926658790872447 0.528832271826748 0.765699545754478 0.649738577132447 0.75028381474282 -0.157773575916165 0.127020404183357 0.19756741214795 -0.0110016498707137 -0.175388891280151 2.46755988997037 2.37606426432074 1.66659895658807 -0.496422245627369 -0.578914636993097 -0.509769286196207 0.278695323826327 -0.027706534125927 0.593319088283495 -0.382286745612317 -0.423086705279839 -0.503665439618496 -0.0310112325301195 -1.2960663176828 1.9890729350757 2.20116776304624 -0.00868773482079278 -0.423037960253726 0.24985125150725 -0.296553592912977 -0.7322369532006 -0.633196063522311 -0.513819653016111 -0.887514681256781 -4.17140856146362 -4.01163423446958 -4.21876656976059 0.215444972765229 0.280057666196917 0.210498530682146 -0.309656424380868 -0.439427259204577 -0.90361870303433 -0.715491137434595 0.621061087799066 0.778760158562752 -1.75778603389583 -1.08875751240198 -0.242894427551511 -0.132947624524364 -1.93359579967572 -0.526027696300167 0.104282640407355 -0.876479933893249 -0.577705816604667 -0.594890050032251 0.0963966926653595 -0.634534006762536 -0.580319810079479 -0.57636727573715 -0.110642531479401 -0.908123754893847 -0.712912134481515 -0.706633114969239
48410 0.0762469831729355 -0.244359148038513 -0.643213604631294 -0.451061928756443 0.0887744244285676 -0.098077180145823 1.78780671742503 1.16476406306943 0.632942381340046 0.814334912474963 0.924219845273404 0.926746533809732 0.47818415396393 0.240883579803781 0.382409938265967 0.51817463739989 0.546673602607125 0.807058396404095 -0.0626428307296037 0.0698666609765093 0.147069426837661 0.403664187830138 -0.144474004310048 3.19538878343672 2.90687518141214 2.03785147684752 -0.734214676335592 -0.896500735672553 -0.265993861775513 0.0425291707397441 -0.0665971773082023 0.266946294193142 -0.402396986298004 -0.52292295512022 -0.531099284532403 -0.425978368041197 -0.749391609743234 2.02475143516157 2.09094732131372 0.0193327938850111 -0.577095666145943 0.205090922440067 -0.310790002733442 -0.443661949933755 -0.60886921969626 -0.166031865085893 -0.445252086961812 -3.71415189325635 -3.46847184084787 -3.62346095055225 0.404174445949347 0.49572063461008 0.219888388541154 0.103603024879229 -0.190912377331533 -0.63938917318999 -0.474491572194129 0.406774213357397 0.606886399693816 -2.12052661418776 -1.22578720241629 -0.0364602101937856 -0.260956909914381 -2.11683649428716 -0.452871207332492 0.494823617368175 -0.29972542583474 0.130236413316841 -0.12457833350865 0.279470768807824 -0.147056946883312 -0.152779362216684 -0.0526640079406251 -0.354549159969345 -0.929979145247373 -0.631030670201177 -0.567361567650931
50034 -0.102537766988633 -0.121940119025135 -0.3626275240349 -0.427465763751817 -0.0588210750582881 -0.244494216065822 2.35318723034725 2.24150336243487 0.99660056389132 1.20966417718836 1.35000089826959 0.712383122489788 0.526531921922426 0.539984628666722 0.610711113827627 0.36122879455929 0.93451180937755 1.08949730624634 -0.0636237711858044 -0.100238956671397 0.111860679008637 -0.0838894050882338 -0.145033829936429 2.89034253354153 2.49892034315502 2.28641669647372 -0.572740755918749 -0.559822283113802 0.0669079058006075 -0.0452404949434345 -0.0548611634807034 0.437659960084632 -0.184574383355712 -0.326044933682064 -0.297366783775758 -0.267659818012731 -0.0816373671287076 2.02553991617301 2.65602352078881 0.012406760329923 0.0848089087485124 0.543404129480225 -0.691827394771152 -1.171068621465 -1.22868402863709 -0.944913393931028 -1.09192698010674 -3.42549431813088 -3.3004681301653 -3.33890420573301 0.200081330180228 0.276518265103959 0.136764008044425 -0.51819662536462 -0.748327956326533 -0.350832497887988 0.0813539515467577 0.816393940742352 1.32012907354232 -1.73291706984795 -0.623656098341938 0.56460412588854 0.0351616098201034 -1.58003909311659 -0.0658896030942795 0.157997597167039 -0.61065020417807 -0.493693309816585 -0.552099929674993 0.0992920285707642 -0.398703927620284 -0.378991452384664 -0.615402307508182 -0.167994591163279 -0.437154893660212 -0.47991751943564 -0.433156234537538
8270 0.396377762918135 0.394675439566739 -0.335961742852062 -0.346856612300991 0.380035458744741 0.68645366199587 1.94898518020479 0.651028313053336 0.728844918092311 0.537258638832895 0.896568028611871 1.32203310847276 0.667935788579393 1.18351846201644 0.276517175746402 0.32618756649341 0.819466399380481 0.985313549566803 -0.258220040040548 0.214984995886872 0.0295202713990725 -0.364148812904463 -0.0654251112016406 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -3.57251303053919 -3.43613599949119 -3.53210721196794 -0.00563290834412635 0.0596316106496773 0 -0.230566870366513 -0.107116407259451 -0.859798275327357 -0.293740525987279 0.766938258785159 0.79191500598183 -1.85201334496679 -1.03283153304859 -0.291437000425866 -0.186435060550184 -1.31535645666595 -0.613829001440206 -0.0613688254509662 -0.321523828242429 0.354343875227282 -0.146297677088903 0.305095779820741 -0.0770822926778736 -0.822555335905411 -0.206216603883102 -0.23237391080084 -0.338739601454509 -0.35086520978135 -0.201792392928172
[+] Show/hide bicluster #152 motif PSSM #1. bicluster 152 motif PSSM #1 Phaeodactylum tricornutum 24x4
POSITION A C G T
1 0 0.714286 0.285714 0
2 0.857143 0.142857 0 0
3 0 0 1 0
4 0 0.142857 0.714286 0.142857
5 1 0 0 0
6 1 0 0 0
7 0.857143 0.142857 0 0
8 0.714286 0.285714 0 0
9 0.142857 0.571429 0 0.285714
10 0.142857 0 0.857143 0
11 0.428571 0 0.428571 0.142857
12 0.285714 0.142857 0.285714 0.285714
13 0.285714 0.142857 0.571429 0
14 0 0.428571 0.428571 0.142857
15 0 0 0.142857 0.857143
16 0 0 0.714286 0.285714
17 0.428571 0.428571 0.142857 0
18 0 0.714286 0.285714 0
19 0.571429 0.142857 0 0.285714
20 0.142857 0 0.428571 0.428571
21 0 0.428571 0 0.571429
22 0 0 1 0
23 0.714286 0.285714 0 0
24 0 0.857143 0.142857 0 [+] Show/hide bicluster #152 motif PSSM #2. bicluster 152 motif PSSM #2 Phaeodactylum tricornutum 23x4
POSITION A C G T
1 0.555556 0 0 0.444444
2 0.111111 0.888889 0 0
3 0.111111 0.111111 0.555556 0.222222
4 0.444444 0.333333 0 0.222222
5 0 0.888889 0 0.111111
6 0.222222 0.111111 0.333333 0.333333
7 0.333333 0.333333 0 0.333333
8 0 0 0 1
9 0 0 0.111111 0.888889
10 0.222222 0.222222 0.333333 0.222222
11 0 1 0 0
12 0 0 0 1
13 0 0 0.333333 0.666667
14 0.222222 0 0.111111 0.666667
15 0 0.333333 0.555556 0.111111
16 0.222222 0 0.222222 0.555556
17 0.111111 0.111111 0 0.777778
18 0 0.444444 0 0.555556
19 0.444444 0.333333 0.111111 0.111111
20 0 0.888889 0 0.111111
21 0 0 0.888889 0.111111
22 0 0.222222 0 0.777778
23 0 0.111111 0.666667 0.222222 |