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[+] Show/hide bicluster #165 rows and columns.
bicluster 165
Phaeodactylum tricornutum
36x81
[+] Show/hide bicluster #165 rows (genes).
bicluster 165 genes
Phaeodactylum tricornutum
36
[+] Show/hide bicluster #165 rows (short gene names).
bicluster 165 short names
Phaeodactylum tricornutum
36
short_name
[+] Show/hide bicluster #165 rows (long gene names).
bicluster 165 long names
Phaeodactylum tricornutum
36
long_name
[+] Show/hide bicluster #165 rows (NCBI RefSeq gene IDs).
bicluster 165 NCBI RefSeq IDs
Phaeodactylum tricornutum
0
[+] Show/hide bicluster #165 gene upstream sequences.
bicluster 165 upstream sequences
Phaeodactylum tricornutum
34
upstream
[+] Show/hide bicluster #165 columns (arrays; conditions).
bicluster 165 arrays
Phaeodactylum tricornutum
81
[+] Show/hide bicluster #165 ratios.
bicluster 165 ratios
Phaeodactylum tricornutum
36x81
GENES GSE12015_Si_free_11v18_1 GSE12015_Si_free_22v19_2 GSE17237_highlight_12hr_1 GSE17237_highlight_12hr_3 GSE17237_highlight_24hr_1 GSE17237_highlight_24hr_3.1 GSE17237_highlight_30min_1 GSE17237_highlight_3hr_3 GSE17237_highlight_6hr_1 GSE17237_highlight_6hr_3 GSE31131_Cadmium_0.12mg_1 GSE31131_Cadmium_0.12mg_2 GSE31131_Cadmium_0.12mg_3 GSE31131_Cadmium_1.2mg_1 GSE31131_Cadmium_1.2mg_2 GSE31131_Cadmium_1.2mg_3 GSE34988_Ammonia_3 GSE34988_Ammonia_4 GSE34988_Ammonia_5 GSE34988_Cadmium_1 GSE34988_Cadmium_2 GSE34988_Cadmium_3 GSE34988_Cadmium_4 GSE34988_Cadmium_5 GSE34988_Control_1 GSE34988_Control_2 GSE34988_Control_3 GSE34988_Control_4 GSE34988_Control_5 GSE34988_Control_6 GSE34988_Copper_1 GSE34988_Copper_2 GSE34988_Copper_3 GSE34988_Copper_4 GSE34988_Copper_5 GSE34988_Mixture_1 GSE34988_Mixture_2 GSE34988_Mixture_3 GSE34988_Mixture_4 GSE34988_Mixture_5 GSE34988_Salinity_15ppt_1 GSE34988_Salinity_15ppt_2 GSE34988_Salinity_15ppt_3 GSE34988_Salinity_15ppt_4 GSE34988_Salinity_15ppt_5 GSE34988_Silver_3 GSE34988_Simazine_4 GSE42039_Dark_treated_48h_3 GSE42039_light_0.5h_1 GSE42039_light_6h_1 GSE42039_light_6h_2 GSE42039_light_6h_3 GSE42514_dark_8hr_light_3hr_1 GSE42514_dark_8hr_light_3hr_2 GSE42514_light_0.5hr_2 GSE42514_light_10.5hr_2 GSE42514_light_15.5hr_1 GSE42514_light_15.5hr_2 GSE42514_light_16hr_dark_30min_1 GSE42514_light_16hr_dark_30min_2 GSE42514_light_16hr_dark_4hr_1 GSE42514_light_16hr_dark_4hr_2 GSE42514_light_16hr_dark_7.5hr_2 GSE42514_light_6hr_2 GSE55959_BlueLight_6h_rep1 GSE55959_BlueLight_6h_rep3 GSE55959_GreenLight_0.5h_rep1 GSE55959_GreenLight_0.5h_rep2 GSE55959_GreenLight_0.5h_rep3 GSE55959_GreenLight_24h_rep3 GSE55959_GreenLight_6h_rep1 GSE55959_GreenLight_6h_rep2 GSE55959_GreenLight_6h_rep3 GSE55959_RedLight_0.5h_rep1 GSE55959_RedLight_0.5h_rep2 GSE55959_RedLight_0.5h_rep3 GSE55959_RedLight_24h_rep1 GSE55959_RedLight_24h_rep2 GSE55959_RedLight_6h_rep1 GSE55959_RedLight_6h_rep2 GSE55959_RedLight_6h_rep3
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50191 0.248027351829345 0.402433880190054 1.47764828179833 0.604506612129411 0.134983607595381 0.382233873185688 1.32474948777338 0.921930103491179 1.43830186527724 1.25912974079907 0.458092892295608 0.660014245285591 0.582926029106761 1.00337803341196 0.424256669531701 1.07430815393029 -2.01502806002689 -2.10220217118982 -2.77702900051021 -1.31714706443908 -1.08447767980398 -1.25787984424784 -1.55465482305404 -2.00445357434579 0.283530319193979 0.403124406166904 0.293534790468791 0.603869049408335 0.296796637463148 0.25399977999741 -0.473891414125958 -0.545855573971664 -0.220158254201372 -0.0986690723267169 -0.0436082674429797 -3.053465369746 -2.56432710481324 -2.924296134309 -3.27148030325649 -2.55894649143672 -0.0815026086404214 -0.64356758555121 -0.149164857282207 -0.511890224963941 0.120298949104186 0.200591488276611 -0.295288656152169 -1.84948213241492 0.81205730409669 0.469056619787979 0.16388118146757 0.167238988214635 0.0183143745331572 -0.00984015727884761 0.0333491932426609 -0.227421247894772 0.0718201096895489 -0.302987022588521 0.0885627266273848 0.157534866180214 0.424359202557636 0.303593624496943 0.350407711123662 -0.12475140458728 0.0879503121433861 -0.204295457756129 0.246285445956941 0.361320792067717 0.488103766303035 -0.0953407251346674 0.0516661829234829 -0.39000883487047 -0.255927830075126 0.0882893815452181 0.0725101714019471 0.179426948016024 0.265178327338264 0.322934672491611 0.111669469098073 0.022856851525227 -0.159095186832188
54019 -0.167912728378793 -0.128844391042829 3.06386817089311 0.740400496100504 1.54995889099496 1.23849457739082 0.739577499158263 0.709538110766459 1.41303997995572 1.08947128671324 0.19733299435558 0.0552187149732794 0.276937934000339 -0.323830619899345 0.109791097818429 -0.184760148274244 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -0.967579553925668 -0.546616380837991 -1.29039051793203 -1.0609592278896 -1.2134075573901 1.64405522390117 1.6853549862103 2.18741412942496 1.68484098206578 1.63482482277882 1.71620497493958 1.45039268831446 1.38065733715595 0.574472361863389 0.866117234089214 0.416404502297177 1.58009138633379 -0.439525415212623 -0.670700450236184 -0.731680661449749 -0.576817140588873 -0.657542857319886 -0.0737574872278613 -0.884727416087228 -0.743317248511104 -0.652554641026021 -0.317515645863725 -0.239791150561802 -0.0804312870600689 -0.282523683921549 -0.457181298312694 -0.188090048811536 -0.326863772586045 -0.47434213757045
54065 -1.14848041465247 -0.88696158038959 1.8121775952855 0.677342911985069 1.5693668541664 1.10191106916571 1.49136776609819 1.46346268378299 1.19822925937422 1.54267074858501 0.0630621987844376 -0.0483280231221966 0 0.248738744862239 -0.0784903490068734 0.142025546241549 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -1.9112512935218 0.456156138187802 -0.280190867009737 -0.221497505900474 -0.21845337778527 1.10882805920991 1.40445017322217 1.3539207866692 1.16740720973798 0.0799833020407625 1.15564442602773 -0.132774758412366 0.825808779276216 -0.565717228683698 0.800411699769895 0.776728742484322 1.44089519632386 -0.100489933161405 -0.126865958286976 -0.299162150909639 -0.324801488316571 -0.240248925206486 -0.762172325344593 -0.713438398215704 -0.72607512296388 -0.652467701097859 -1.17214709669491 -1.30088576099243 -1.38406880886367 -1.1198303553073 -1.16555039377755 -0.824903268914821 -0.79399108165676 -0.755583335002087
54217 -0.302427410000056 -0.943828353646087 2.60043348647609 2.33399853504668 2.13534626002757 1.89222641268539 1.80103043200472 2.21163366745017 2.08053270325838 1.36499483700835 0.849940827981079 0.831392896420689 0.353199665227296 1.09259645627571 0.665059640765378 1.07946441360348 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -1.12953083830814 -0.517042758088343 -0.50909252917839 -0.639970962457597 -0.318617390205787 0.995775180245422 -0.134486193224056 0.660319694164143 0.823645693519841 1.67570739028016 1.61376363761113 1.27833227114199 0.770139382526312 1.14922342174087 0.713861139071243 0.530932198377415 -0.16853592459603 -0.592425252195268 -0.47836496659411 -1.15511079565822 -0.63239337695869 -0.587481159371758 -0.579266226452487 -0.671407382621034 -0.858182467620777 -0.463552985655321 -0.100603343961148 0.193806075078552 0.439441058847716 0.0335406722714415 0 -0.720755747962189 -0.959508175180284 -0.514654596130259
54465 -1.00383117653259 -1.12148838338882 2.61359578536075 0.510657004128851 1.49131982625791 0.793066598640576 0.623026557688715 0.885016090299392 1.08529480241466 0.569178007016164 0.579333438870695 0.29687770427785 0.680527864783273 0.35861774682464 0.606030089806778 0.381881575725389 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -2.67922243496679 -0.401958454854305 -0.916438103598707 -0.936829344027896 -0.675092717067266 0.470685616512985 0.781485169110076 0.993860477123049 0.811162185526627 -0.50273045108481 0.721801143690623 -0.389234878710755 0.829652844758778 0.618772214556796 0.865251528722115 0.832684280894697 0.896913595126234 -0.704526165766438 -0.596150328537236 -0.0189534924622232 0.122894297039239 0.576430040726196 -0.322319964284537 -0.90772386504523 -0.975947783700188 -0.78430456074617 -0.169836515160708 0 -0.842852188578979 0.114057073801761 -7.59910022544679e-06 -0.652478623803585 -0.487676236381231 -0.304189356971674
8282 -1.98158999141992 -0.863297269274881 1.35403826835536 1.34611908090669 1.41519336209777 1.32873504811696 0.775672790620867 0.874533315738248 0.947179236680677 0.913575033020185 0.482884543004634 -0.109798283733093 0.365950289145537 -0.124497428709744 0.273537189579289 -0.0954131967345743 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -0.339222108989777 -0.426707978060391 -1.3538824281062 -1.1150742539278 -0.782807069602388 -0.414586030412552 0.0154257871949898 1.88658157023165 0.430898433572594 -0.900715813062103 0.857500991787586 -0.194598623848612 1.08092881318871 -0.374085596332459 1.51220541586255 1.70255876747914 0.965503373966743 0.0765191685145517 0.285980690176285 -1.81799008736637 -1.0294035567476 -0.811054833250339 0.13162101347196 -1.54927183017774 -1.4181330306475 -0.800218837017085 -1.62867004852107 -0.984457556813838 -0.341322096990463 0 0.409263010697913 -1.07788865410095 -0.898503087557384 -0.447759920374901
9320 0.445164203028869 -0.313017096105884 2.06542346910366 1.313046283321 2.78259612442349 2.05117908096861 1.87767863498024 1.16294461890913 1.59290482738438 1.82069348543305 -0.664112774858516 0.909424898133318 -0.213443125286654 -0.204364701915251 0.226081715008348 0.0398714763000119 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -1.55648624542441 -0.82170811591545 -0.607078070085273 -0.561236548622997 -0.86929821558699 -0.534059891800049 0.579914898886581 0.568740535521642 0.928724704310138 0.938420716258957 1.05274408959131 1.58699020436394 1.39345472150346 0.663385874289797 0.853730184696954 0.465130543382362 0.705187379909687 -0.504266978179322 -0.300652029789356 -1.20255945783921 -0.897913083848922 -0.86492889486001 -0.098911134460429 -0.551519969923425 -0.373773027340962 -0.830821496303198 -0.28719619399617 -0.736198025923218 -0.417822191017954 0.0342968197223592 -0.431211418433446 -0.160354882528691 -0.0188348688392968 -0.390187907600861
9547 -0.554955904289507 -0.922350215186206 2.60372987736321 1.68406681448433 0.828021831672445 0.949594841931268 1.24504888118818 1.89465479772694 1.65742260773303 1.67140490447675 0.0794670871359454 0.557733287810542 0.756576831921384 1.08498674980658 1.08375668929606 0.958761431478282 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -2.18231265673788 -0.945866552541986 -0.261140273275254 0.104775730779615 0.334567970286485 0.179302575440651 0.101804011904449 0.737028769115033 -0.501583929056535 0.522458472869166 0.656983698846231 0.461968933173155 0.390937783110445 0 -0.229097864392766 -0.0098725424186985 0.0400061925051055 -0.463573981286953 -0.888824795689328 -0.295127884499673 -0.306182173713943 -0.288984540489906 -0.605875737208923 -0.215548237910955 -0.232672837560972 -0.0358215770115003 -1.53293069389162 -1.56987454645571 -1.55370635545144 -0.959905082552082 -0.82852945420414 0.445777731547104 0.253964410734778 0.271307231122672
[+] Show/hide bicluster #165 motif PSSM #1. bicluster 165 motif PSSM #1 Phaeodactylum tricornutum 11x4
POSITION A C G T
1 0 0.62069 0 0.37931
2 0 0 0 1
3 0.413793 0.586207 0 0
4 0.931034 0 0.034483 0.034483
5 0 0.862069 0.068966 0.068966
6 0.37931 0 0 0.62069
7 0.068966 0 0.896552 0.034483
8 0 0 0 1
9 0.413793 0.586207 0 0
10 0.965517 0 0 0.034483
11 0.482759 0 0.448276 0.068966 [+] Show/hide bicluster #165 motif PSSM #2. bicluster 165 motif PSSM #2 Phaeodactylum tricornutum 19x4
POSITION A C G T
1 0.181818 0 0.090909 0.727273
2 0 0.545455 0.090909 0.363636
3 0 0 0.363636 0.636364
4 0.636364 0.181818 0.181818 0
5 0.090909 0.909091 0 0
6 0 0 0.818182 0.181818
7 0.727273 0.090909 0 0.181818
8 0.545455 0.090909 0.090909 0.272727
9 0.454545 0.181818 0.181818 0.181818
10 0 0 0 1
11 0.090909 0.090909 0.818182 0
12 0 0 1 0
13 0.909091 0 0.090909 0
14 0 0 0.181818 0.818182
15 0 0.272727 0.727273 0
16 0 1 0 0
17 0.454545 0.545455 0 0
18 0.727273 0 0.272727 0
19 0.727273 0.272727 0 0 |