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[+] Show/hide bicluster #172 rows and columns.
bicluster 172
Phaeodactylum tricornutum
16x78
[+] Show/hide bicluster #172 rows (genes).
bicluster 172 genes
Phaeodactylum tricornutum
16
[+] Show/hide bicluster #172 rows (short gene names).
bicluster 172 short names
Phaeodactylum tricornutum
16
short_name
[+] Show/hide bicluster #172 rows (long gene names).
bicluster 172 long names
Phaeodactylum tricornutum
16
long_name
[+] Show/hide bicluster #172 rows (NCBI RefSeq gene IDs).
bicluster 172 NCBI RefSeq IDs
Phaeodactylum tricornutum
0
[+] Show/hide bicluster #172 gene upstream sequences.
bicluster 172 upstream sequences
Phaeodactylum tricornutum
16
upstream
[+] Show/hide bicluster #172 columns (arrays; conditions).
bicluster 172 arrays
Phaeodactylum tricornutum
78
[+] Show/hide bicluster #172 ratios.
bicluster 172 ratios
Phaeodactylum tricornutum
16x78
GENES GSE12015_Si_free_11v18_1 GSE12015_Si_free_11v18_2 GSE12015_Si_free_22v19_1 GSE17237_highlight_12hr_1 GSE17237_highlight_12hr_2 GSE17237_highlight_24hr_3.1 GSE17237_highlight_30min_1 GSE17237_highlight_30min_3 GSE17237_highlight_3hr_3 GSE17237_highlight_48hr_3 GSE17237_highlight_6hr_1 GSE17237_highlight_6hr_3 GSE31131_Cadmium_1.2mg_1 GSE31131_Cadmium_1.2mg_3 GSE34988_Ammonia_2 GSE34988_Ammonia_3 GSE34988_Ammonia_4 GSE34988_Ammonia_5 GSE34988_Cadmium_2 GSE34988_Cadmium_3 GSE34988_Cadmium_4 GSE34988_Control_1 GSE34988_Control_4 GSE34988_Copper_1 GSE34988_Copper_2 GSE34988_Dispersant_1 GSE34988_Dispersant_3 GSE34988_Dispersed_oil_2 GSE34988_Dispersed_oil_3 GSE34988_Dispersed_oil_4 GSE34988_Dispersed_oil_5 GSE34988_Mixture_1 GSE34988_Mixture_2 GSE34988_Mixture_3 GSE34988_Mixture_5 GSE34988_Oil_1 GSE34988_Oil_3 GSE34988_Oil_4 GSE34988_Oil_5 GSE34988_Salinity_15ppt_1 GSE34988_Salinity_15ppt_2 GSE34988_Salinity_15ppt_3 GSE34988_Salinity_15ppt_4 GSE34988_Silver_3 GSE34988_Silver_4 GSE34988_Silver_5 GSE34988_Simazine_5 GSE42039_Dark_treated_48h_1 GSE42039_Dark_treated_48h_2 GSE42039_Dark_treated_48h_3 GSE42039_light_0.5h_1 GSE42039_light_0.5h_2 GSE42039_light_0.5h_3 GSE42039_light_24h_1 GSE42039_light_24h_2 GSE42039_light_24h_3 GSE42514_dark_8hr_light_3hr_1 GSE42514_dark_8hr_light_3hr_2 GSE42514_light_0.5hr_1 GSE42514_light_10.5hr_1 GSE42514_light_10.5hr_2 GSE42514_light_15.5hr_1 GSE42514_light_15.5hr_2 GSE42514_light_16hr_dark_30min_1 GSE42514_light_16hr_dark_30min_2 GSE42514_light_16hr_dark_4hr_1 GSE42514_light_16hr_dark_4hr_2 GSE42514_light_16hr_dark_7.5hr_2 GSE42514_light_6hr_2 GSE55959_BlueLight_0.5h_rep1 GSE55959_BlueLight_0.5h_rep2 GSE55959_BlueLight_0.5h_rep3 GSE55959_GreenLight_0.5h_rep1 GSE55959_GreenLight_0.5h_rep2 GSE55959_GreenLight_0.5h_rep3 GSE55959_RedLight_0.5h_rep1 GSE55959_RedLight_0.5h_rep2 GSE55959_RedLight_0.5h_rep3
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47557 -0.111006761701671 -0.067116987884558 0.137460139659669 0.939649132907383 0.229773754836984 0.746824308434846 0.690507562295632 -0.209240055463244 0.0846981024742378 0.567398560365648 0.527165058615284 0.699637360700398 -0.621129260093691 -0.695241314526025 -1.59504552615325 -2.26198705693478 -2.23970418249529 -1.79466876777244 -0.135972146471575 0.206084367667679 0.17848527364314 -0.0159130899020923 -0.37684807350338 -0.0270123639209398 0.248133890422943 0.17469541706481 -0.28959745930697 0.203557092928177 0.477567320326495 -0.282721948503071 0.528122463612273 -2.38584617499909 -1.46660714496058 -1.90533853726168 -2.28864940535041 0.221106966704309 0 0.228607946684895 0.51042367654901 0.254070638864688 0.702613151204869 0.142066018127232 0.674479225827455 -1.04700531007663 -1.14417879275441 -1.39561982478878 -0.861718427303293 -2.84797234002574 -2.82653942144244 -2.84652974257954 -1.80283181544027 -1.81244846148919 -1.58126970227491 0.865494890218155 0.781084630777701 0.181664537495548 -0.821725591092086 -0.478636265755433 -0.124185885774367 1.0736939037654 0.748374271555624 1.48332067468585 1.17756564204693 1.3975053748332 1.27418692650764 0.769556322318575 0.69042576107426 0.0255840698684393 0.210385137897622 -2.0013365722928 -1.93350905870404 -2.29985750568211 -1.87378724546731 -1.83031180761453 -1.91203950008568 -2.17658527627425 -2.35426159299801 -2.5584959779887
4761 -0.112530024482609 -0.157448168391811 0.0317058096532709 0.488454593042394 0.0175797052402425 0.637415721103499 0.0180869602690852 -0.69031957619107 0.135849533705761 0.127257012773262 0.374769615228927 0.155875440767339 -0.189283162152895 -0.0993082088242703 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -2.38873700530893 -2.17474059518512 -2.3255182333123 -1.83665589542507 -1.6550398125605 -1.84172963889077 0.518317859653885 0.525562200470715 0.57582800897478 -0.520216764934343 -0.61933961698298 -0.0368433593124503 1.33751556439188 0.900320890038052 1.3132705507663 1.12520595970261 1.0960326184933 1.16917573525016 0.823795173758674 0.801351947912873 0.188134432265746 0.400839584095519 -1.87282118397453 -2.08496599226234 -2.11806392940685 -1.95356557053742 -1.93747783008753 -2.11525629711436 -2.34546432554395 -2.30253028695535 -2.34180297834316
9158 -0.0830639709647176 -0.148784231432869 0.14504622383592 0.399283266721455 0.623653495773023 0.590910948113587 0.511771156376936 -0.244626627897062 0.424005842914944 0.0846479746627616 0.27707745723053 0.540407552554854 0.0784244969621993 -0.00620416134202889 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -1.91282455423552 -2.01179253934433 -2.09477644984152 -1.96956930324829 -1.99472628163014 -1.95308354871515 0.433637430129644 0.306523488214234 -0.0691326306055895 -0.149279246714615 0.150240387800883 -0.0765444377156291 1.06906580431587 1.09200198110607 1.47451380888026 1.46255045142537 1.39935551050075 1.24104926458642 0.774275786459042 0.836039928641152 0.450855542317906 0.692131424431415 -2.08256794085078 -1.97789706294768 -2.04961528717058 -2.13850176057045 -2.19380970383811 -2.13850176057045 -2.26228465988635 -2.29440777360376 -2.26228465988635
[+] Show/hide bicluster #172 motif PSSM #1. bicluster 172 motif PSSM #1 Phaeodactylum tricornutum 23x4
POSITION A C G T
1 0 0 0.384615 0.615385
2 0 0.307692 0.538462 0.153846
3 0 0.076923 0 0.923077
4 0 0.153846 0.076923 0.769231
5 0.153846 0.230769 0.615385 0
6 0 0.153846 0.230769 0.615385
7 0 0 0 1
8 0.076923 0 0 0.923077
9 0 0.769231 0.230769 0
10 0.076923 0.307692 0.615385 0
11 0.538462 0.307692 0.153846 0
12 0.538462 0.307692 0 0.153846
13 0.153846 0.153846 0.230769 0.461538
14 0.076923 0.615385 0.230769 0.076923
15 0 0.307692 0.230769 0.461538
16 0.384615 0 0.461538 0.153846
17 0.076923 0.615385 0.153846 0.153846
18 0.076923 0.538462 0 0.384615
19 0 0.076923 0.153846 0.769231
20 0 0.153846 0 0.846154
21 0 0.384615 0.153846 0.461538
22 0.076923 0.384615 0.538462 0
23 0.846154 0 0.076923 0.076923 [+] Show/hide bicluster #172 motif PSSM #2. bicluster 172 motif PSSM #2 Phaeodactylum tricornutum 14x4
POSITION A C G T
1 0 0.588235 0 0.411765
2 0.235294 0.529412 0.117647 0.117647
3 0 0.117647 0 0.882353
4 0 0.117647 0 0.882353
5 0.117647 0.352941 0.058824 0.470588
6 0.411765 0 0 0.588235
7 0 1 0 0
8 0.529412 0.117647 0.176471 0.176471
9 0 0.117647 0.705882 0.176471
10 0.058824 0 0 0.941176
11 0.058824 0.882353 0.058824 0
12 0.411765 0.294118 0.294118 0
13 0.176471 0.705882 0.117647 0
14 0.529412 0 0 0.470588 |