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[+] Show/hide bicluster #182 rows and columns.
bicluster 182
Phaeodactylum tricornutum
21x81
[+] Show/hide bicluster #182 rows (genes).
bicluster 182 genes
Phaeodactylum tricornutum
21
[+] Show/hide bicluster #182 rows (short gene names).
bicluster 182 short names
Phaeodactylum tricornutum
21
short_name
[+] Show/hide bicluster #182 rows (long gene names).
bicluster 182 long names
Phaeodactylum tricornutum
21
long_name
[+] Show/hide bicluster #182 rows (NCBI RefSeq gene IDs).
bicluster 182 NCBI RefSeq IDs
Phaeodactylum tricornutum
0
[+] Show/hide bicluster #182 gene upstream sequences.
bicluster 182 upstream sequences
Phaeodactylum tricornutum
21
upstream
[+] Show/hide bicluster #182 columns (arrays; conditions).
bicluster 182 arrays
Phaeodactylum tricornutum
81
[+] Show/hide bicluster #182 ratios.
bicluster 182 ratios
Phaeodactylum tricornutum
21x81
GENES GSE17237_highlight_12hr_2 GSE17237_highlight_24hr_1 GSE17237_highlight_24hr_3 GSE17237_highlight_24hr_3.1 GSE17237_highlight_30min_1 GSE17237_highlight_48hr_1 GSE17237_highlight_48hr_2 GSE17237_highlight_48hr_3 GSE17237_highlight_6hr_3 GSE31131_Cadmium_0.12mg_2 GSE31131_Cadmium_0.12mg_3 GSE34988_Ammonia_1 GSE34988_Ammonia_2 GSE34988_Cadmium_1 GSE34988_Cadmium_2 GSE34988_Cadmium_3 GSE34988_Cadmium_4 GSE34988_Cadmium_5 GSE34988_Control_1 GSE34988_Control_3 GSE34988_Control_4 GSE34988_Control_6 GSE34988_Copper_1 GSE34988_Dispersant_1 GSE34988_Dispersant_2 GSE34988_Dispersant_3 GSE34988_Dispersant_4 GSE34988_Dispersant_5 GSE34988_Dispersed_oil_1 GSE34988_Dispersed_oil_2 GSE34988_Dispersed_oil_3 GSE34988_Dispersed_oil_4 GSE34988_Dispersed_oil_5 GSE34988_Mixture_1 GSE34988_Mixture_2 GSE34988_Mixture_3 GSE34988_Mixture_4 GSE34988_Oil_1 GSE34988_Oil_2 GSE34988_Oil_3 GSE34988_Oil_4 GSE34988_Oil_5 GSE34988_Salinity_15ppt_2 GSE34988_Salinity_15ppt_4 GSE34988_Silver_1 GSE34988_Simazine_1 GSE42039_Dark_treated_48h_1 GSE42039_Dark_treated_48h_2 GSE42039_Dark_treated_48h_3 GSE42039_light_0.5h_1 GSE42039_light_0.5h_2 GSE42039_light_0.5h_3 GSE42039_light_24h_3 GSE42039_light_6h_1 GSE42039_light_6h_2 GSE42039_light_6h_3 GSE42514_dark_8hr_light_3hr_1 GSE42514_light_16hr_dark_30min_1 GSE42514_light_16hr_dark_30min_2 GSE42514_light_16hr_dark_4hr_1 GSE42514_light_16hr_dark_7.5hr_1 GSE42514_light_6hr_1 GSE55959_BlueLight_0.5h_rep1 GSE55959_BlueLight_0.5h_rep2 GSE55959_BlueLight_0.5h_rep3 GSE55959_BlueLight_24h_rep1 GSE55959_BlueLight_24h_rep2 GSE55959_BlueLight_6h_rep1 GSE55959_BlueLight_6h_rep2 GSE55959_GreenLight_0.5h_rep1 GSE55959_GreenLight_0.5h_rep2 GSE55959_GreenLight_0.5h_rep3 GSE55959_GreenLight_24h_rep1 GSE55959_GreenLight_24h_rep3 GSE55959_GreenLight_6h_rep1 GSE55959_GreenLight_6h_rep2 GSE55959_GreenLight_6h_rep3 GSE55959_RedLight_0.5h_rep1 GSE55959_RedLight_0.5h_rep2 GSE55959_RedLight_0.5h_rep3 GSE55959_RedLight_24h_rep3
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45061 -1.29023977603995 -1.35587311174987 -1.52146050447696 -1.36348039036804 -0.63828184716555 -0.967670509384599 -0.677538311588303 -1.18380863187353 -1.09406072015178 -0.353641882700419 -0.286562819832292 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2.92996787479929 2.95193380600492 2.91526346261078 1.65954019162561 1.54683105220517 1.72535315126822 -0.69495101642215 0.813514171772773 0.493185763968775 0.600578772186323 0.55100063949163 -1.19431011037659 -0.882400939777288 -0.929536297325571 -0.183540143569483 0.539122431969612 1.94821952091522 2.05481207389263 1.79336533445465 -0.0929193430776661 -0.310571977297015 0.288738972760332 0.0284208271406174 1.37615393155774 1.29134002605412 1.07928100451778 -0.399739742278136 -0.60141555817593 0.977059891581077 0.532008976383147 0.46163777698615 1.3196810909068 1.37360816682446 1.32831823631447 0.14928428201983
45518 -0.516484512485467 -1.11096832985083 -1.77869095723526 -1.66493652866616 -0.0489249924256478 -1.16489003550462 -1.18289821221113 -1.55849375332465 0.79164278286594 -0.471628034056476 -0.185475882958259 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2.42750695112065 2.42933051392147 1.89772129920228 1.6114606459879 1.72370792208248 1.33191836895604 0.294772301863227 -0.0188476683818631 0.416531061612879 -0.185577730572762 -0.742713595242055 -0.43860845242034 -0.526270469459953 -0.34778704775741 -0.0749283756382372 -0.330058426071045 1.39891248288743 0.920057093032006 1.61485334143721 -0.26086961244123 0.0641539937625365 0.578233703587445 -0.180570726107378 0.726302721301927 0.925219899875077 1.01979708907622 0.110832409765178 0.0811662138684176 0.298634757630075 0.496338392653491 0.379208313159456 1.07850127213705 1.18353484274671 1.2192988881318 -0.495799949332882
45635 -1.39757221829106 -1.80214865912585 -2.27699952191542 -1.83023872511628 -0.106427910437061 -1.88876960394265 -1.26517965064742 -1.85651817251041 -0.783843851834652 -0.412904831901699 -0.627114939680738 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 1.81492295353217 2.2402182834572 2.05092172976055 1.90584708355853 2.05029914697988 2.21564706597157 -0.499410829561541 0.297458071817785 -0.0476956335629692 1.22004064049263 0.621179555497884 -0.5522069204469 -0.496843821825451 -0.686447224335364 -0.406942003258391 0.921633777604519 1.81149336397121 2.3913694267039 1.26273125806739 -0.152295044959169 -0.52726568644039 -0.143133690480431 0.606686792641463 1.70579621828355 1.69409712943486 1.2177927581546 -0.499159050332827 -0.434558863028986 0.635693981710783 0.0582427040815933 0.347865636488764 1.06441295062114 1.54895163726234 1.30372597087234 0.143962213560169
46048 -1.44897990094951 -1.4343608422714 -1.65979314792344 -1.27846905460814 -0.346233689311208 -1.26069517759917 -1.63575626601887 -1.44259314252076 -0.869196391622729 -0.415062176101957 -0.554232888552837 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2.22998471905723 2.22092924070069 2.12533417466503 2.372279193639 2.18264084475737 2.48980681084148 -0.294924028777682 1.15791088229776 0.913807812861744 0.619211603294474 0.117520096130753 0.192555086522399 0.223514296153531 -0.526188734858458 -0.530808435807416 0.364920681571099 2.03825914765497 2.06144999095019 1.98906591254625 0.130409052016744 -0.237336619499035 0.470279610850045 0.78351201215313 1.97352158297341 1.75762438347813 1.44057638273919 -0.360815622006447 -0.485702190759012 1.04363874228067 0.773236623579546 0.657891076563501 0.919823025668551 0.740950343966724 1.22598341028353 -0.46396473986561
46597 -1.54730591697275 -1.6654838533245 -1.72873564540267 -1.0525322751825 -0.619242355515688 -1.57838356435945 -1.07332557445091 -1.49860422665925 -0.985217500521297 -0.147556180140286 -0.0969768553394846 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3.21949494811801 3.23296538309715 3.238778735681 1.64048788026265 1.63293362443514 1.6102802865057 -0.595865867789802 0.923186951342264 0.856562032298322 0.888642838389853 0.0169857996631878 -0.0518287108119294 0.238200655902841 -0.355977755406096 -0.378484545767513 0.0748240388533788 1.61805511126271 1.670877313389 1.68556063602256 -0.302853938742098 -0.226005791523453 0.449115992181125 0.512936258706653 1.40690161805838 1.3462639182039 1.19155305397004 -0.440416383692187 -0.428061049414081 0.448056475281039 0.268808740405347 0.51916020943719 1.32376618660645 1.40307322030009 1.46537231658393 -0.32346933656115
49001 -1.02671468063772 -0.905576005524434 -1.76817307747037 -1.16459542065901 -0.349833296983024 -1.26611151401149 -0.146533931903315 -0.929638757900681 -0.527939411188309 0.0297787474614358 -0.111379937245109 0.515497120643496 0.487200592946309 -0.272599849792898 -0.25136050489186 -0.198290263163207 -0.107045157783547 -0.618150826118378 0.0817499032152366 0.0164617780942333 0.0971253883083291 0 -0.592418175502624 -1.51681764660199 -1.46171761736304 -1.14549998781527 -1.5000103734719 -1.24599671217482 -1.8375319716901 -2.49494331573732 -2.2601855338817 -1.93523684901996 -2.33887549326683 1.13288981977418 1.22633412045239 1.04802662054713 0.908877367698459 -2.06492122444974 -1.72715766281591 -2.712492806421 -2.59006249085226 -2.16668378985293 0.185159948922424 0.145380779322913 -0.196831527682322 -0.855509171986016 2.70824937791623 2.90176455279926 2.74678244642674 1.75142414265004 1.941697346607 2.00656066324569 0.112355304519671 0.44542528622664 0.640711806706689 0.916942621012504 0.463369768393138 -0.543046713304795 -0.524938885841233 -0.231360082135555 -0.0034003946090063 0.251091711183538 1.67187377613904 2.18942217148475 1.91846579058129 -0.135538787483469 -0.168570636617774 0.677503905019793 0.644768549987351 0.484066438847072 0.608306657355992 0.564950460222172 0.152984723096815 0.106577826657208 0.557716492987113 0.341490772210912 0.577763553324704 0.288827042264879 0.51197457730425 0.433811460369015 -0.141855913599868
55097 -0.732770167508553 -2.04704435424219 -2.4186443151635 -1.3086682102977 -0.379066708019896 -2.3255071979359 -2.07295157650382 -1.97136241875789 -0.276851798475621 -0.404877322986337 -0.181775948483333 0.515892489302086 0.438003428422106 -0.439051466794083 0.138844897895926 -0.00805367246159656 0.0753738445811535 -0.195366810242174 -0.0705667617993786 -0.0337716393852424 -0.0049929453151723 -0.00535730412019557 -0.054393421636898 -2.49598089685323 -2.41240680403858 -2.54147618135185 -2.49654187785139 -2.14639839719023 -2.06542402864515 -2.41842307823661 -2.52895417429037 -2.54246349693052 -2.1699191996988 0.288866426965123 0.472337090268845 0.583892113870527 0.382895339308272 -2.11988952006355 -1.81293487961902 -1.94562258437045 -2.12762386718159 -1.98867952269485 -0.277608628076692 -0.320772882834512 -0.845647804628979 0.17311369562862 1.70549544024095 1.71420906181315 1.44550204709189 1.37503816356622 1.21427409204765 1.23184941812056 -0.180980970492619 0.902059292489093 0.582922203893152 0.761468458769413 0.128729749011118 0.254729624912808 0.0680871702624006 0.13786054285423 0.0928508703411498 0.360890117815638 1.10540563869009 1.02398496024352 0.778294644394865 -0.577363238781251 -0.829814490677341 0.325409021892043 0.324081406879296 1.25289845336013 1.03321600908828 0.900664217773866 -0.331173518181118 -0.39026907565331 0.639647281858432 0.649386236810428 0.727854873415984 0.937575583147805 1.06227553296939 1.05644602220669 -0.612916895006625
[+] Show/hide bicluster #182 motif PSSM #1. bicluster 182 motif PSSM #1 Phaeodactylum tricornutum 15x4
POSITION A C G T
1 0 0 1 0
2 0.923077 0.076923 0 0
3 0.769231 0.076923 0 0.153846
4 0.538462 0.153846 0.307692 0
5 1 0 0 0
6 0.846154 0 0 0.153846
7 0.153846 0 0.538462 0.307692
8 0.307692 0.615385 0.076923 0
9 0.692308 0.153846 0.153846 0
10 0.076923 0.615385 0 0.307692
11 0 0.076923 0 0.923077
12 0 0 0.153846 0.846154
13 0 0.307692 0.076923 0.615385
14 0.076923 0.461538 0 0.461538
15 0 0.923077 0.076923 0 [+] Show/hide bicluster #182 motif PSSM #2. bicluster 182 motif PSSM #2 Phaeodactylum tricornutum 15x4
POSITION A C G T
1 0.25 0 0.1 0.65
2 0.25 0.1 0 0.65
3 0.1 0.2 0.05 0.65
4 0 0 0 1
5 0 0.1 0 0.9
6 0 0.15 0.55 0.3
7 0 0.35 0 0.65
8 0.8 0.2 0 0
9 0 0.15 0 0.85
10 0 0 0 1
11 0 0.15 0 0.85
12 0.15 0.35 0.05 0.45
13 0.3 0.2 0 0.5
14 0.3 0.05 0.15 0.5
15 0.25 0 0 0.75 |