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[+] Show/hide bicluster #184 rows and columns.
bicluster 184
Phaeodactylum tricornutum
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[+] Show/hide bicluster #184 rows (genes).
bicluster 184 genes
Phaeodactylum tricornutum
24
[+] Show/hide bicluster #184 rows (short gene names).
bicluster 184 short names
Phaeodactylum tricornutum
24
short_name
[+] Show/hide bicluster #184 rows (long gene names).
bicluster 184 long names
Phaeodactylum tricornutum
24
long_name
[+] Show/hide bicluster #184 rows (NCBI RefSeq gene IDs).
bicluster 184 NCBI RefSeq IDs
Phaeodactylum tricornutum
0
[+] Show/hide bicluster #184 gene upstream sequences.
bicluster 184 upstream sequences
Phaeodactylum tricornutum
22
upstream
[+] Show/hide bicluster #184 columns (arrays; conditions).
bicluster 184 arrays
Phaeodactylum tricornutum
80
[+] Show/hide bicluster #184 ratios.
bicluster 184 ratios
Phaeodactylum tricornutum
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GENES GSE12015_Si_free_23v20_1 GSE17237_highlight_12hr_1 GSE17237_highlight_30min_1 GSE17237_highlight_30min_3 GSE17237_highlight_3hr_2 GSE17237_highlight_3hr_3 GSE17237_highlight_48hr_1 GSE17237_highlight_6hr_1 GSE31131_Cadmium_0.12mg_2 GSE31131_Cadmium_0.12mg_3 GSE31131_Cadmium_1.2mg_1 GSE31131_Cadmium_1.2mg_2 GSE31131_Cadmium_1.2mg_3 GSE34988_Ammonia_1 GSE34988_Ammonia_2 GSE34988_Ammonia_3 GSE34988_Ammonia_4 GSE34988_Ammonia_5 GSE34988_Cadmium_2 GSE34988_Cadmium_4 GSE34988_Cadmium_5 GSE34988_Control_2 GSE34988_Control_4 GSE34988_Control_5 GSE34988_Control_6 GSE34988_Copper_2 GSE34988_Copper_5 GSE34988_Dispersant_5 GSE34988_Dispersed_oil_4 GSE34988_Mixture_2 GSE34988_Mixture_3 GSE34988_Mixture_4 GSE34988_Mixture_5 GSE34988_Oil_2 GSE34988_Salinity_15ppt_1 GSE34988_Salinity_15ppt_3 GSE34988_Salinity_15ppt_5 GSE34988_Silver_1 GSE34988_Silver_3 GSE34988_Simazine_2 GSE34988_Simazine_3 GSE34988_Simazine_4 GSE42039_Dark_treated_48h_1 GSE42039_Dark_treated_48h_2 GSE42039_Dark_treated_48h_3 GSE42039_light_0.5h_1 GSE42039_light_0.5h_2 GSE42039_light_0.5h_3 GSE42039_light_6h_1 GSE42039_light_6h_2 GSE42039_light_6h_3 GSE42514_light_0.5hr_2 GSE42514_light_10.5hr_1 GSE42514_light_15.5hr_1 GSE42514_light_16hr_dark_30min_1 GSE42514_light_16hr_dark_30min_2 GSE42514_light_16hr_dark_4hr_1 GSE42514_light_16hr_dark_4hr_2 GSE42514_light_16hr_dark_7.5hr_1 GSE42514_light_6hr_1 GSE55959_BlueLight_0.5h_rep1 GSE55959_BlueLight_0.5h_rep2 GSE55959_BlueLight_0.5h_rep3 GSE55959_BlueLight_6h_rep1 GSE55959_BlueLight_6h_rep2 GSE55959_BlueLight_6h_rep3 GSE55959_GreenLight_0.5h_rep1 GSE55959_GreenLight_0.5h_rep2 GSE55959_GreenLight_0.5h_rep3 GSE55959_GreenLight_24h_rep1 GSE55959_GreenLight_24h_rep3 GSE55959_GreenLight_6h_rep1 GSE55959_GreenLight_6h_rep2 GSE55959_GreenLight_6h_rep3 GSE55959_RedLight_0.5h_rep1 GSE55959_RedLight_0.5h_rep2 GSE55959_RedLight_0.5h_rep3 GSE55959_RedLight_24h_rep1 GSE55959_RedLight_24h_rep2 GSE55959_RedLight_24h_rep3
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43454 0.39418622536931 0.258957025626974 0.649528942751481 -0.602009667663158 1.04181468359459 0.865750291192591 0.521857584060396 0.743502394510298 0.119531996468602 0.731982095783417 0.23220678988302 0.496240173639659 0.3721398887679 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -1.5887226803585 -1.58683611340359 -1.60742826134246 -2.74403302914473 -2.77823715872027 -2.87546989862648 0.377840678351162 0.535523417511841 0.561032569091158 -0.412895456844987 0.200880861556417 -0.223198874846308 -0.523274272695554 -0.332654933078 0.21038598727209 0.115722338242193 0.58029061964169 0.643760893364231 -2.47185982426288 -2.62517012307936 -2.70690826863466 0.502615268523613 0.194742968334568 0.270702217966191 -2.46074016864195 -2.47811776957797 -2.35450927059215 -0.104280603031671 -0.0941323690157981 0.0658773309395237 0 0.0442274680455513 -1.61808991844379 -1.46635559653919 -1.66252146570901 -0.55806117784907 -0.457763669198728 -0.446762428450627
43515 0.116537465028046 0.23262651128007 0.540701176932422 -0.051522029310007 0.877948487781205 0.401561612099128 0.274908338060011 0.519408990065042 -0.0218012402189629 -0.165044765509978 -0.0276492948868174 0.264927847926923 0.0813423557427468 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -1.44931065122533 -1.5815950123871 -1.5641381816544 -2.86444398158693 -3.20254634991562 -2.62608874879737 0.992615484793458 0.860802766472935 0.549986304931098 0.560046263812977 0.496302266291006 0.285532756056899 0.189358098425662 0.555055958329618 -0.24023068546902 0.277594746926884 -0.117167662346153 -0.444058666668995 -2.53675167522905 -3.36864411846071 -3.4379555645409 0.359327703458592 0.516979286130039 0.163849567933359 -1.21088424705157 -1.37320793308099 -1.24207244460843 -0.700518394410899 -0.739540806252204 0.859231662112145 0.561619113817781 0.0685918426418829 -1.34952389337275 -1.72701831052959 -1.51932873349503 -0.166091037119088 0.294778694449665 -0.993973092928098
44453 0.674580490385232 -0.0195164672753424 0.416375780347306 -0.59489169120289 0.675291906542186 0.431279192009791 -0.211486819449462 0.378097806974691 0.250540133207157 0.361796538246361 0.709400527139632 0.440436782966326 0.43678888309769 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -1.72504416833062 -1.66232618624124 -1.72864868749597 -2.45525396405793 -2.79187856346825 -2.03403244552622 0.809788347278216 0.876814628414318 0.868044587047674 -0.775094158344584 -0.434241174434664 -0.0301990965221328 -0.250656466852277 -0.290437424222955 0.377872208794617 0.142252757073769 0.584797930233198 0.600634694730391 -2.32030206117678 -1.87279288708206 -2.13884929952811 0.360433427795922 0.0782530116445235 -0.0366928682824783 -3.02282809995017 -2.5164842566037 -2.56003849981957 0.15774549311082 0.158759063500427 0.620154372358323 0.271808568686434 0.136351114069448 -2.05208570303567 -1.98345222971374 -2.17100665574979 0.090310648664202 0.361357174580087 -0.174490361566887
45790 0.540303975049123 0.564008248611509 0.93670123053965 -1.2977268342231 1.57683467612033 1.26557364438592 0.583565044253061 0.800209169409852 0.686933745205709 0.320898286623263 0.14159172878843 0.378367547516393 0.268449116579855 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -1.87894479019593 -1.64981292976039 -1.68343799295168 -2.52217782511738 -2.36764753248355 -2.63563630469007 0.237997277482182 0.32264676158671 0.265679190275638 -1.23382556101771 1.04854298847294 0.896382580066009 1.04967834740922 0.547474508049405 0.439223910761257 -0.0483128540670003 0.436981743825554 0.725161643660094 -2.54346007616462 -2.51747599574286 -2.27730810732875 -0.586658232781603 -0.150804888266141 -0.194944357750867 -1.84225195094921 -2.00955886993763 -1.75892104637205 -0.137088690582488 -0.141114083150027 -0.0127428287252126 -0.114680294763818 -0.141114083150027 -1.15216804606818 -1.40622816104908 -1.20747011003213 -0.700819437729317 -0.77245661699965 -0.075218981074103
46920 -0.00630955458317957 0.168981120139777 0.532888445558738 -0.99706636417342 1.15242339494776 0.519857509644134 -0.0595765784680643 0.162408795504546 -0.275410674555514 0.194984598624084 -0.0494653097984779 0.26197405856055 -0.0170846633842646 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -0.667274153509615 -0.746370768279081 -0.778050956110608 -1.90033464418935 -2.20394112457137 -1.69424093341551 0.511453331867147 0.227162234698323 1.07394697487438 0.0280969025659812 0.630856585126523 0.620814718500162 0.662314537341799 0.959213357483804 0.374809918743838 0.486532463574402 0.0120462521575282 1.3723815883615 -2.78813850590696 -2.56866844805521 -3.03174687279922 0.262962309001265 0.604705397483434 0.395015162564271 -1.6016581158234 -1.81110547534702 -1.59703659691263 -0.498432894414826 -0.382806858059238 0.918917032248584 0.629871137046215 0.935476898741411 -2.37946966258198 -2.59602955830047 -2.41657415746498 -0.790850886694975 -0.543898560038839 -0.774862487534749
47092 0.0752738203691103 0.113551516050365 0.362264828027206 -1.03315303125058 0.204472761787126 0.439549823002424 -0.219979234903286 0.434371267751329 0.328315842048165 0.037277368538564 0.636206528612195 0.389062475802353 0.503879258854773 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -0.632935814986543 -0.470033017747571 -0.666118525892852 -2.90743069930435 -3.03298612579215 -2.892870109468 1.09683414269497 0.737062245987631 0.920394615939947 -1.1191517392719 0.617472379415984 0.571804141485734 0.403489338541515 0.136559410989824 0.535823693478041 0.286110957549319 0.337242009102925 0.150848665897034 -2.60252587655681 -3.21966616673775 -3.13982043989065 0.478948772366707 0.673447493784162 0.387110431494813 -1.57800085272556 -1.88780064548664 -1.84199384805052 -0.226917917137801 -0.263882893482452 0.776785402406803 0.44100681361985 0.829510682881505 -2.03599609517891 -2.15641269994761 -2.10978133843722 -0.0598428936429325 0.0352014424923697 -0.406348744271332
47117 0.179636991854617 0.336912377617701 0.439997425319621 -0.173855034717498 0.519086981355906 0.544657242084966 0.45376107313649 0.594704462461784 -0.120398065362652 0.32496241501504 -0.0463195158975807 0.00871014498894399 -0.073477010880541 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -1.37559308286092 -1.25947793995023 -1.38173553369347 -2.73563203616515 -2.79766214956447 -2.83813020327473 0.802309355313113 0.549673712152914 1.14717417862558 -0.837589133285673 0.192813739764814 0.577935062540406 0.625943902249149 0.320404497613724 0.437724151775583 0.0651750381436102 0.310460338551405 0.0565275370653494 -3.08681048698862 -2.97503517513559 -3.16653868358037 0.422993164716024 0.59048922317988 0.452792571225923 -2.36636327199614 -2.13350706068307 -2.07542709170341 -0.168004364137114 -0.146842540108496 0.415994190913359 0.602925994751913 0.896845691217178 -1.52926002926828 -1.39301756218594 -1.67750766302549 0.0842046576920992 0.224530194596226 -0.124124231772256
47603 0.113416706701564 0.689998779658407 0.798637512219011 -1.3073900597585 0.507223663065257 0.929552308530312 0.404108658899202 0.851984886155778 0.437399734631979 0.649229175908343 0.379629052005304 0.303502719809083 0.239667562004254 -2.32074108622424 -2.60182275139692 -2.1414126896298 -2.47527015938897 -3.31406764779852 -0.465351405875714 -0.207803797771122 -1.1976067721914 0.238736303665307 0.26665103965061 0.225114237882633 0.190725000063037 0.370575572844666 0.595184276022375 0.780914965829356 0 -3.10921208260365 -1.69549274904962 -1.89100096534307 -2.34881949814974 0.401037622277779 0.355925907022967 0.450250599068052 0.834684243925363 -0.112615168108537 0.24640602081914 0.795950065143475 0.579471093760282 0.94715232890876 -1.07942715773042 -1.08214451660207 -1.10889210209581 -2.74591450570372 -2.77360028833467 -2.67127228369497 0.144129792826175 0.378438432154924 0.347329776694024 -1.43547195753448 0.0483933636663669 0.709309544023975 0.693155789253551 0.669225652287547 0.361473775349099 0.17909353342553 0.391266496824758 -0.633154886195139 -2.84561759907757 -3.02742684535541 -3.11499918749259 -0.0677513801458908 -0.29386473571984 -0.347371640738486 -1.88489546414547 -1.8833176533987 -1.8148235534434 -0.257620915170365 -0.365538534971105 0.114004768156444 -0.0370329736806714 0.152810809047315 -1.21522491155876 -1.15025555886144 -1.43898748265759 -0.398701036425366 -0.312524312197725 -0.48362275751561
48029 -0.00785826713092313 -0.241421892407631 0.0294695899639743 -1.33923644565741 0.29489845910218 0.671797241636578 0.147660117051032 0.190608990859914 0.176755606849086 -0.0228435439738978 0.260823256001833 0.175163882553881 0.142723464889091 -2.24649141055437 -2.77636566314307 -1.75425797727707 -1.60705777509309 -2.5602533339435 -0.0311524665451163 -0.279973176734301 -0.628997944853704 0.090354745683247 -0.0542427573623394 0.136596050446132 0.134234043858592 0.136331408980703 0.00873249947477261 0.412181058705447 0.469107094235207 -2.20213466814061 -1.97500599202546 -2.64302445829715 -1.89829533870209 0.65640097055898 0.08473163665921 0.143180648604651 -0.036607651731805 0.0556756923669792 0.0758751565730633 -0.265421725501408 -0.197993746825034 -0.284224849185049 -2.04739453612455 -2.06303625686504 -2.10734833686538 -3.28849457842705 -3.47303192764805 -3.29862577957127 0.607026301019201 0.652735662497662 0.704108525285175 -0.972462067060409 0.740633542632017 0.837377439454527 0.595818288534215 0.368694603805605 0.325203149486712 0.0483371039394522 0.138073252714495 0.717660821215182 -2.92972776562929 -2.91831770995724 -2.9009116308126 0.295512860475346 0.223092278270271 0.28141356609824 -1.95271267164795 -1.83513881169428 -1.92034520488669 -0.409103388307587 -0.415247047678064 0.325903536313202 0.422836658520187 0.621850725287463 -1.17322598535228 -1.11628051030172 -1.78721253460278 -0.47110351571644 -0.402138732894396 -0.57343201938869
48569 0.101829058462254 -0.110572869702602 0.214205558410833 -1.45355244339391 0.313559978366917 0.687083853692946 0.169437486585081 0.366602659826133 0.343666693543798 0.255006685029954 0.306054159933118 0.428776094877736 0.332562028346621 -2.82248895222551 -2.95456180448313 -1.77087620195298 -2.84033386062906 -3.57719002144318 -0.183905247884879 -0.521736785776934 -1.21550987037827 0.084448834433391 0.11218199695891 0.00265631993202492 0.144850347011793 0.0783173704245368 0.275771915977797 0.282506031453291 0.0446318422529176 -3.32905038456043 -2.82079752466809 -2.99604888928741 -3.22554596973503 -0.0989687180961084 0.125481780499502 0.114391787089154 0.0545589487961747 0.11992646313101 0.354334901620942 0.468528930005691 0.348398860076052 0.464938010179273 -1.58094649321519 -1.58243948553991 -1.55993562963315 -2.49818798348137 -2.42882388592504 -2.40269263944261 0.483171343192908 0.438602863605138 0.697920221158308 -1.14049889261003 0.554378719215305 0.662627444364566 0.637032740607021 0.554028249666955 0.358038637975592 0.151424251527986 0.0201110601837012 0.124022603301986 -2.20726048808115 -2.45491202337776 -2.40326745682852 0.144066332713662 0.10904695059122 0.0245357075214096 -1.58303718054904 -1.7755397364896 -1.52263919288101 -0.554358395235915 -0.521752322395809 0.243961301255786 0.115389100460664 0.298130017882917 -1.30603616578253 -1.35665638968695 -1.49057826099017 -0.425758965428133 -0.389582726562485 -0.55514829391111
52520 0 1.11811703207955 0.78689712650946 -0.195147164464388 0.379182821644163 0.621641392552464 0.955714024755586 0.73251821106782 0.390578969058457 -0.381892173989652 -0.352641710885396 0.134986891722101 0.126580519892167 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -1.23539866243735 -1.27207345285705 -1.18524273324208 -2.10901667513366 -2.2050972323613 -2.09536615564583 0.0410944515085028 -0.0102501359469244 0.115807614307996 0.0208001338007371 0.46996069001012 0.243863323839458 0.259950734653476 0.565672142933582 0.152968709455672 0.37555404164028 -0.234062895587848 0.840980077236421 -2.63480663306366 -2.76269048450025 -2.66080862446853 -0.268135078555685 -0.0134251067501843 -0.199024787661403 -2.1502645418459 -2.31701251970633 -2.31194952613296 -0.319968370331807 -0.407100477371474 0.0353003537803216 -0.04830932417048 -0.288376287017746 -2.02805394941971 -2.20309609653576 -2.03920861906177 -0.538637072934832 -0.681510771204508 -0.924369788037341
54834 0.114429690058229 -0.0133652316016183 0.156624284507437 -0.860277339550774 0.206537216311609 0.554936252916953 0.0270446880046442 0.608198882118654 0.151096368583645 0 0.313288228455829 0.232855831474166 0.328895743834482 -2.88076019218218 -2.89515254228999 -1.96967471572311 -2.14808387013225 -3.33189633942002 -0.28642443895752 -0.102776211383783 -0.665753031562728 0.0550784969067941 0.251329269644172 0.165277308041688 0.0343484900358849 0.408141063988441 0.530523167523598 0.865601049419855 0.443285478938076 -2.82071958147781 -1.69147557424606 -2.41687518206968 -2.4117216512685 0.31381492759355 0.71616142042409 0.706170621508252 0.882683896002011 -0.206011005290085 -0.168538959446482 0.27289355983674 0.410154323646143 0.482504297401977 -0.859381081404877 -0.804402797725309 -0.814113102773559 -2.68745396182607 -2.29340258981551 -2.26319660262899 0.750661329895638 0.500438651755429 0.623843206691996 -2.37898679956111 0.75515576116122 0.539893222328261 0.304849143046544 0.119810401799533 0.208077386632837 -0.0194758438342061 0.195877354578573 0.0296582029328029 -2.25280229545717 -2.31825904740351 -2.29822986742092 -0.131692898129181 -0.203042642155966 -0.39093717295672 -1.61988720320171 -1.61975567975915 -1.62542007932608 -0.673568695839861 -0.709979553876085 0.162346167380866 -0.0613850505006045 0.201013173678705 -2.25903151251841 -1.49536719751781 -2.07685592083397 -1.17114431516705 -1.07822943451972 -0.962597619899367
[+] Show/hide bicluster #184 motif PSSM #1. bicluster 184 motif PSSM #1 Phaeodactylum tricornutum 8x4
POSITION A C G T
1 0.952381 0.047619 0 0
2 0.333333 0.571429 0 0.095238
3 0 0 0 1
4 0 0.047619 0.904762 0.047619
5 0 0 0 1
6 0.380952 0.142857 0.333333 0.142857
7 1 0 0 0
8 1 0 0 0 [+] Show/hide bicluster #184 motif PSSM #2. bicluster 184 motif PSSM #2 Phaeodactylum tricornutum 15x4
POSITION A C G T
1 0 0.153846 0 0.846154
2 0.461538 0.230769 0.230769 0.076923
3 0 0.923077 0.076923 0
4 0.692308 0.076923 0.153846 0.076923
5 0.230769 0.076923 0.538462 0.153846
6 0 0 0 1
7 0.076923 0.846154 0 0.076923
8 0.307692 0.461538 0.153846 0.076923
9 0 0.846154 0 0.153846
10 0.384615 0 0 0.615385
11 0 0 0.461538 0.538462
12 0 0.076923 0 0.923077
13 0.076923 0.923077 0 0
14 1 0 0 0
15 0.307692 0.230769 0.461538 0 |