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[+] Show/hide bicluster #213 rows and columns.
bicluster 213
Phaeodactylum tricornutum
22x81
[+] Show/hide bicluster #213 rows (genes).
bicluster 213 genes
Phaeodactylum tricornutum
22
[+] Show/hide bicluster #213 rows (short gene names).
bicluster 213 short names
Phaeodactylum tricornutum
22
short_name
[+] Show/hide bicluster #213 rows (long gene names).
bicluster 213 long names
Phaeodactylum tricornutum
22
long_name
[+] Show/hide bicluster #213 rows (NCBI RefSeq gene IDs).
bicluster 213 NCBI RefSeq IDs
Phaeodactylum tricornutum
0
[+] Show/hide bicluster #213 gene upstream sequences.
bicluster 213 upstream sequences
Phaeodactylum tricornutum
22
upstream
[+] Show/hide bicluster #213 columns (arrays; conditions).
bicluster 213 arrays
Phaeodactylum tricornutum
81
[+] Show/hide bicluster #213 ratios.
bicluster 213 ratios
Phaeodactylum tricornutum
22x81
GENES GSE12015_Si_free_22v19_1 GSE12015_Si_free_22v19_2 GSE12015_Si_free_23v20_1 GSE12015_Si_free_23v20_2 GSE17237_highlight_12hr_1 GSE17237_highlight_12hr_2 GSE17237_highlight_12hr_3 GSE17237_highlight_24hr_1 GSE17237_highlight_24hr_3 GSE17237_highlight_24hr_3.1 GSE17237_highlight_30min_1 GSE17237_highlight_30min_2 GSE17237_highlight_30min_3 GSE17237_highlight_3hr_1 GSE17237_highlight_3hr_2 GSE17237_highlight_48hr_1 GSE17237_highlight_48hr_2 GSE17237_highlight_48hr_3 GSE17237_highlight_6hr_2 GSE17237_highlight_6hr_3 GSE31131_Cadmium_0.12mg_1 GSE31131_Cadmium_0.12mg_2 GSE31131_Cadmium_1.2mg_1 GSE31131_Cadmium_1.2mg_2 GSE31131_Cadmium_1.2mg_3 GSE34988_Copper_1 GSE34988_Copper_2 GSE34988_Copper_3 GSE34988_Copper_5 GSE34988_Dispersant_2 GSE34988_Dispersant_3 GSE34988_Dispersed_oil_1 GSE34988_Mixture_2 GSE34988_Mixture_4 GSE34988_Mixture_5 GSE34988_Oil_4 GSE34988_Salinity_15ppt_1 GSE34988_Salinity_15ppt_2 GSE34988_Salinity_15ppt_3 GSE34988_Salinity_15ppt_4 GSE34988_Salinity_15ppt_5 GSE34988_Silver_1 GSE34988_Simazine_2 GSE34988_Simazine_3 GSE34988_Simazine_4 GSE34988_Simazine_5 GSE42039_Dark_treated_48h_1 GSE42039_Dark_treated_48h_2 GSE42039_Dark_treated_48h_3 GSE42039_light_0.5h_1 GSE42039_light_0.5h_2 GSE42039_light_0.5h_3 GSE42039_light_24h_1 GSE42039_light_24h_2 GSE42039_light_24h_3 GSE42039_light_6h_2 GSE42039_light_6h_3 GSE42514_dark_8hr_light_3hr_1 GSE42514_light_0.5hr_1 GSE42514_light_10.5hr_1 GSE42514_light_10.5hr_2 GSE42514_light_15.5hr_1 GSE42514_light_16hr_dark_30min_1 GSE42514_light_16hr_dark_4hr_1 GSE42514_light_16hr_dark_7.5hr_1 GSE42514_light_16hr_dark_7.5hr_2 GSE42514_light_6hr_2 GSE55959_BlueLight_0.5h_rep1 GSE55959_BlueLight_0.5h_rep2 GSE55959_BlueLight_0.5h_rep3 GSE55959_BlueLight_24h_rep1 GSE55959_BlueLight_6h_rep2 GSE55959_GreenLight_0.5h_rep1 GSE55959_GreenLight_0.5h_rep2 GSE55959_GreenLight_0.5h_rep3 GSE55959_RedLight_0.5h_rep1 GSE55959_RedLight_0.5h_rep2 GSE55959_RedLight_0.5h_rep3 GSE55959_RedLight_24h_rep1 GSE55959_RedLight_24h_rep2 GSE55959_RedLight_6h_rep2
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45270 0.0523027658673771 -0.12927652802349 -0.0276238403518342 -0.263756214678036 -0.311753410388961 -0.767964646446978 -0.0454804591222373 -0.989236063890635 -1.30403588321902 -1.08389834520883 -0.327040959673747 -0.368374433175682 -0.456729807491225 -0.34891452474481 -0.201045545703185 -1.32808681397142 -0.190996043647408 -0.596886820539913 -0.45663941430562 -0.375976975838676 0.27986047432399 -0.687291107062504 0.426693896344561 0.17457937246524 0.311467958223893 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3.05038914568165 3.15216716247152 3.19342351341164 2.41773260822792 2.42218991191043 2.08232746852225 -0.157098310478738 -0.321612017456362 -0.226614903034746 0.0762508836252298 0.131889559018018 0.137437071727343 -0.904848012586987 -0.294090722669458 0.484600411108645 -0.708173243290036 -0.741661170074154 -0.52807892556608 -0.403245138453309 0.25760427214458 0.198183802151788 2.00388875470704 2.08246439122566 2.29277777378596 -0.55028643918084 -0.347349820630181 1.65225816009228 1.71236350853288 1.47792875820144 1.43717976826424 1.673239676979 1.69963269027503 0.209653412805512 0.0414316660363614 0.501301865493294
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46747 -0.200754696901885 -0.211311522556851 0.103963238836086 -0.313157551734145 -0.393052112999726 -0.417511352742823 -0.121766087925578 -1.0453041140245 -0.97235434579536 -0.815081196613522 -0.29926880684258 0.133935370701592 -0.204452530015768 -0.132985764466291 0.0436303493319586 -1.15471741042028 -0.697675205543068 -1.09485684423131 -0.125146164793154 -0.63824889921421 -0.0764848764977168 -0.256752137846196 -0.161949319920617 -0.12655661558335 -0.132987446828945 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3.44088768097283 3.42161403705635 3.50436930844021 2.22290850029238 2.12482710399727 2.2118304369641 0 -0.0991807196867428 -0.151119220340109 0.627958689042751 0.536636247891 0.10387227222049 -0.859733619707714 0.17408819890253 -0.177012839731758 -0.154505523396679 -0.178513257597279 -0.127025622748036 -0.389855394288615 0.0299844761757483 -0.370865404335981 2.26841683216995 2.43368370433715 2.52926074750662 0.188446722043995 0.0967382102136173 1.23258812808768 1.13446117405932 0.876391563716808 1.41712006365529 1.48923868383286 1.66893850333739 0.288392746658648 0.392388538980556 0.482833888854832
46943 -0.456860391664682 -0.78604990858433 -0.760157136304879 -0.979009613561341 -0.340201959104125 -0.368601602803597 -0.112130874229578 -1.31198871335857 -1.65630945461489 -1.00955180826685 -0.500638693981988 -0.118531636931423 -0.767284804975574 -0.115584545011173 0.0715655505071569 -1.40995349682014 -0.689716434833585 -1.49897725012189 -0.0727018637115735 -0.431329771225321 -0.137720046164043 -0.0250084180882943 0.308088868986092 -0.121676936505469 0.421999718424532 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3.29333496813537 3.2975845064984 3.39118520212179 1.55847249055064 1.50109609425364 1.53734979582431 -0.314317723637085 -0.186660183467917 -0.131721746662485 0.662592439615388 0.69858358924426 0.0612556472325643 -0.745916962612583 0.113667459710681 0.0998349004882767 0.048512974241376 -0.0805079990703489 -0.108493347116035 -0.159346537425879 -0.0361425726242519 0.247050636041458 1.78906362947339 1.62510917485035 1.85241380198015 0.435187823323475 0.962312239180156 1.48882355854066 1.60349512122517 1.57605450889065 1.97890116013775 1.87663761894118 1.99836887145794 -0.325034231003447 -0.235986608852141 0.497034959199187
47114 -0.658250170873497 -0.90272877404699 -0.5675804259339 -0.541203772860563 -0.219558622580204 -0.485518811627508 0.143987489647969 -0.613263140516103 -1.16859060015888 -0.695662156176391 -0.228516793380236 0.290290541541685 -0.320235010279497 -0.495146839512882 0.395737806365618 -0.813427317985573 -0.377872942867191 -0.625675004327925 -0.0963499789930115 -0.463343190069706 0.0495796784056351 -0.242992630295047 -0.176778988376885 -0.137124987562757 -0.208356787728121 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3.24720786489067 3.32076092836587 3.32293527723267 1.97356837931613 1.92001641776589 2.03564697631852 0 -0.00810065006287929 -0.302667791055481 0.0735642788896492 0.164128088544743 0.220341784983822 -1.12260075144769 -0.0163272416270068 0.79967593794088 -0.514427487818789 -0.0437783151567898 -0.241231307256857 -0.743896535433972 0.627533908523821 0.82154184556675 1.75761652896515 1.85836876105735 1.98030590912827 0.635226661675201 1.00827368114087 1.66974442476803 1.69640680656116 1.5929706628473 1.70008455764661 1.76037541388698 2.13245598771932 0.0287137691875361 0.0271366193134462 -0.0672589974656505
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49606 -0.704417512096693 -0.667487000132361 -0.65179153254752 -1.22329120519556 -0.549970007671639 -0.784501327291347 0.184333723580936 -1.7154056648336 -2.00866778279969 -1.70623766523845 -0.621654183089516 0.547900252004019 -0.638071847352771 -0.172058027045522 0.276374817871597 -1.43268105294799 -1.01986153173514 -1.78826135815879 0.0177812180120173 -1.31327239759665 0.476484848645438 -0.378756050814778 0.378719525000306 0.415122751321591 0.330055368706862 -0.271270889979982 -0.135352244085477 -0.0158871671186356 0.189551212283285 -0.179050200557944 -0.330174769325776 0.346380535715613 -1.07017254949777 -1.3693575009049 -1.49907438540828 0.176353669131944 -1.08630328420001 -1.21697461726816 -1.05879866990604 -0.999305871996125 -0.780380155715475 -0.570215485305078 0.592565996478954 0.185463721676274 0.744891227483125 0.0981424463218682 2.91180066928795 2.66968731303222 2.82108671492991 2.35971036586508 2.18359852010053 2.26081961686691 0.00529521257681175 -0.11093286820337 -0.579219907984687 0.199842510514851 0.130620149657885 0.418579673968901 0.00642597559969317 -0.540159235450288 -0.207548552838484 -0.552489456611151 -0.365470044117981 0 -0.120971540178026 0.197153435972607 -0.169248699839168 2.72498132805011 2.70383320226054 2.91399486565677 0.0482602112279574 0.612810955171088 1.60566861904146 1.80172850934295 1.69253504571959 1.44399696191199 1.54254915559554 1.89377463794651 0.233755275012018 0.463127094831671 0.404555877296458
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[+] Show/hide bicluster #213 motif PSSM #1. bicluster 213 motif PSSM #1 Phaeodactylum tricornutum 13x4
POSITION A C G T
1 0 0.461538 0 0.538462
2 0 0 0.076923 0.923077
3 0.384615 0 0.615385 0
4 0.923077 0.076923 0 0
5 0 0.692308 0 0.307692
6 0.153846 0.076923 0 0.769231
7 0 0 1 0
8 0 0 0 1
9 0.307692 0 0.692308 0
10 0.846154 0 0 0.153846
11 0.538462 0 0.461538 0
12 0 0 0 1
13 0.461538 0.153846 0 0.384615 [+] Show/hide bicluster #213 motif PSSM #2. bicluster 213 motif PSSM #2 Phaeodactylum tricornutum 24x4
POSITION A C G T
1 0.857143 0.142857 0 0
2 0 0 0 1
3 0 0.428571 0 0.571429
4 0 0 1 0
5 0.285714 0 0 0.714286
6 0 0.571429 0.285714 0.142857
7 0.142857 0 0.714286 0.142857
8 0 0 0 1
9 0 0.714286 0.285714 0
10 0 0 0.857143 0.142857
11 0.714286 0.285714 0 0
12 1 0 0 0
13 0.714286 0.285714 0 0
14 0.714286 0.285714 0 0
15 0.428571 0.142857 0.142857 0.285714
16 0.714286 0 0 0.285714
17 0.714286 0 0 0.285714
18 0.142857 0 0.428571 0.428571
19 0 0 0.571429 0.428571
20 0.857143 0 0.142857 0
21 0.142857 0 0.714286 0.142857
22 1 0 0 0
23 0.285714 0 0.142857 0.571429
24 0 0.142857 0.857143 0 |