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[+] Show/hide bicluster #220 rows and columns.
bicluster 220
Phaeodactylum tricornutum
30x83
[+] Show/hide bicluster #220 rows (genes).
bicluster 220 genes
Phaeodactylum tricornutum
30
[+] Show/hide bicluster #220 rows (short gene names).
bicluster 220 short names
Phaeodactylum tricornutum
30
short_name
[+] Show/hide bicluster #220 rows (long gene names).
bicluster 220 long names
Phaeodactylum tricornutum
30
long_name
[+] Show/hide bicluster #220 rows (NCBI RefSeq gene IDs).
bicluster 220 NCBI RefSeq IDs
Phaeodactylum tricornutum
0
[+] Show/hide bicluster #220 gene upstream sequences.
bicluster 220 upstream sequences
Phaeodactylum tricornutum
29
upstream
[+] Show/hide bicluster #220 columns (arrays; conditions).
bicluster 220 arrays
Phaeodactylum tricornutum
83
[+] Show/hide bicluster #220 ratios.
bicluster 220 ratios
Phaeodactylum tricornutum
30x83
GENES GSE12015_Si_free_11v18_1 GSE12015_Si_free_11v18_2 GSE12015_Si_free_22v19_1 GSE12015_Si_free_23v20_1 GSE12015_Si_free_23v20_2 GSE17237_highlight_12hr_2 GSE17237_highlight_12hr_3 GSE17237_highlight_30min_1 GSE17237_highlight_3hr_1 GSE17237_highlight_3hr_2 GSE17237_highlight_3hr_3 GSE17237_highlight_6hr_1 GSE17237_highlight_6hr_2 GSE31131_Cadmium_0.12mg_1 GSE31131_Cadmium_0.12mg_2 GSE31131_Cadmium_0.12mg_3 GSE34988_Ammonia_1 GSE34988_Ammonia_2 GSE34988_Ammonia_5 GSE34988_Cadmium_1 GSE34988_Cadmium_3 GSE34988_Cadmium_4 GSE34988_Control_1 GSE34988_Control_2 GSE34988_Control_3 GSE34988_Control_4 GSE34988_Control_5 GSE34988_Control_6 GSE34988_Copper_1 GSE34988_Copper_2 GSE34988_Copper_3 GSE34988_Copper_4 GSE34988_Copper_5 GSE34988_Dispersant_1 GSE34988_Dispersant_2 GSE34988_Dispersant_3 GSE34988_Dispersant_4 GSE34988_Dispersant_5 GSE34988_Dispersed_oil_1 GSE34988_Dispersed_oil_4 GSE34988_Dispersed_oil_5 GSE34988_Mixture_1 GSE34988_Mixture_2 GSE34988_Mixture_3 GSE34988_Mixture_4 GSE34988_Mixture_5 GSE34988_Oil_1 GSE34988_Oil_2 GSE34988_Oil_4 GSE34988_Oil_5 GSE34988_Silver_1 GSE34988_Silver_2 GSE34988_Silver_3 GSE34988_Silver_4 GSE34988_Silver_5 GSE42039_light_0.5h_1 GSE42039_light_0.5h_2 GSE42039_light_0.5h_3 GSE42039_light_24h_3 GSE42039_light_6h_1 GSE42039_light_6h_2 GSE42514_dark_8hr_light_3hr_2 GSE42514_light_0.5hr_1 GSE42514_light_0.5hr_2 GSE42514_light_10.5hr_1 GSE42514_light_10.5hr_2 GSE42514_light_15.5hr_1 GSE42514_light_15.5hr_2 GSE42514_light_16hr_dark_30min_1 GSE42514_light_16hr_dark_30min_2 GSE42514_light_16hr_dark_4hr_1 GSE42514_light_16hr_dark_4hr_2 GSE42514_light_16hr_dark_7.5hr_1 GSE55959_BlueLight_24h_rep1 GSE55959_BlueLight_24h_rep2 GSE55959_BlueLight_24h_rep3 GSE55959_GreenLight_0.5h_rep1 GSE55959_GreenLight_0.5h_rep3 GSE55959_GreenLight_24h_rep3 GSE55959_GreenLight_6h_rep2 GSE55959_RedLight_24h_rep1 GSE55959_RedLight_24h_rep2 GSE55959_RedLight_24h_rep3
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49779 0.260990374890218 0.500456725749013 0.495555367690499 -0.0667004210218176 0.272193479023963 -1.17528958669637 0.316270691850165 1.01369193193611 0.194009816050591 0.766544452805619 0.611416470253671 0.653876234920564 -0.750488883765015 0.266921018141019 0.437936402742633 0.439070717036175 -2.11293718338865 -1.87118245847173 -0.123583217160165 0.33854198136797 -0.425639126208886 -0.370123137949605 0.00513486178837582 0.18121551986586 -0.0264914871773056 0.225781825208842 -0.0287164096543871 0.0957094660190327 -0.366645666418731 -0.863485997946665 -0.705303979188458 -0.575342369684952 -0.512828068347044 0.304318146496075 0.255238013870835 0.267221569650565 0.108984533848345 -0.424007338076285 -0.343529251368563 0.470886159228764 0.144483615263008 -1.07566454195437 -1.41893597091713 -0.595242863674128 -3.94129988247799 -1.50658961781476 -0.163734344154337 0.225410491320389 -0.476112415247126 -0.645044218534186 0.474143587790572 0.688377187208934 0.731152459295993 0.866278391719792 0.882285863038012 1.51304225936306 1.40229549083025 1.26821678709597 0.123529378428472 0.0690966467568347 -0.0194955722495606 0.192638877286855 0.449292672297763 -0.344809974454766 -1.07936535673673 -1.50578536492362 -3.01098777492615 -2.4836326778358 -2.61152295627842 -2.309893449781 -1.06793591839802 -1.09343227889954 0.257701486798563 -0.104600688420101 -0.131407350535445 -0.191000381599012 0.175659412619868 0 0.0672515938002553 -0.455640677850233 -0.38572734609841 -0.24880410571904 -0.243235725376238
50215 0 -0.063592865646878 0.00867175440639245 -0.325672554373405 0.333380780512421 -1.06495888808371 0.635225280833595 0.781353977863981 -1.43896202034874 -0.069316223555097 1.06254043213259 0.763490163786813 -1.01411350141423 -0.86314789248161 0.376180706149305 0.104976404730718 -2.38344540671363 -2.72121004813696 -0.351040776564606 0.122477193153171 -0.0525276318691164 0.06524314194213 0.0541953750047993 0.0484513686858104 -0.0279876855553441 -0.124974972532427 0.0104238370983755 0.0630167557158328 -0.135485079134222 0.0231827666457019 0.0990813489758367 -0.265570866712977 0.0494951299520119 -0.148576566608921 -0.104731675295502 -0.21048884625184 -0.0408724345508812 -0.506107412320531 -0.0133164973403942 0.151840408772438 -0.14131729646609 -0.852217364773269 -0.687828458136515 -0.709962725847524 -3.83738007822044 -0.905594007648128 -0.302264085085184 -0.081812677403579 -0.179911705456712 -0.214833366303595 0.426999955187477 0.465819545551826 0.488435191985217 0.386383991627277 0.252308358751989 1.30677117530254 1.54911998884061 1.26917018818074 0.267555224546807 -0.423910227601078 -0.580924485688812 -0.369292472047097 0.490261755980048 0.82153124051685 -1.005776188329 -0.163415224377671 -0.852718802613152 -0.318431797473431 -1.55238372168176 -1.18920354553657 -0.365934344772289 -0.480464644328754 -0.174411706433604 -0.185969875320099 -0.175539899687586 -0.262621852285906 1.22547607224615 0.0159037467583193 0.0167976872734367 -0.305337090179593 -0.295093703184876 0.0140022122270206 0.0601277135170329
51837 0.241814837185865 1.15349334877489 -0.167035674918884 0.272817719620348 0.681668231725097 -2.01995200881806 0.650025914840402 0.558276759635853 -1.28375950020897 -0.323387086396288 0.360468681303089 0.752848912114519 -1.28442799986147 0.0383099792057642 -0.209451493449561 0.40741867138981 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.71101857707355 0.57847363492901 0.65374788009368 0.211139485332432 0.262268598911852 0.332895047078493 -0.170024128250182 -0.625758301988432 -0.139081641973237 -0.648123789954647 0.18015014324979 -1.34982601408001 -0.81373603793271 -1.85485910646037 -0.492136470881785 -0.704250579866658 0.224231868478597 0.00753382769000811 -0.490104834810149 0.272680087841911 -0.061223410152163 0.589099488253636 0.451889843635479 -0.115845292937387 0 -0.341357091575018 -0.675553138691847 0.0249840697642439
8747 0.0163890547095146 0.0152847182324562 -0.356214072649965 0.146479891706986 -0.157212639484055 -0.877642001003734 0.172363330056279 -0.514328552089268 -1.15879723337097 -0.377072780028643 0.283640690830584 0.43222253779992 -1.03877573637131 -0.0481064042236459 0.162830697586311 -0.0991068714071536 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.221580400164399 0.232410241943863 0.239881797103379 -0.232781974262811 0.533001122016273 0.52949122048028 -0.0262095848471596 0.262532236549862 -0.513821365753751 -1.34966968394611 -1.29635084519758 -0.824293436148518 -1.39998172656146 -1.31145006590962 -1.4393873814053 -0.407058511060642 -0.687850274728948 0.174031174097172 0.303231712842514 -0.279708866379167 -0.300534689870359 1.07365790628288 0.934260438107911 -0.193228581431592 0.280811702265398 0.255106701247913 0.524731387286748 -0.176690689514304
9709 0.559690752227584 0.496070096032417 0.226798459066032 0.125507677492149 0.55383095494645 -1.03292959891347 -0.0336472070431026 1.18103296174278 1.41378410974941 0.744472483538993 0.601967794421136 0.463146406451418 0.0494056530881672 0.300562145316875 0.597204616345471 0.287092982709241 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.484067091588428 0.556038063305336 0.466996930213571 0.285644276776569 -0.0995334035748228 0 0.428777871550714 0.602178913193832 0.681577924916183 -1.44473228635286 -0.951895486804733 -1.33389812744261 -0.821399242089518 -1.88979486412091 -1.25611644531655 -0.242840195987831 -0.0368142039343487 0.0703326543911429 -0.0225982369419965 -0.0790038825224604 -0.12343506900036 0.301358992215712 0.331161163068396 -0.0105504326767133 -0.319736591966708 -0.170118754222229 -0.119284199625569 -0.243145334532815
[+] Show/hide bicluster #220 motif PSSM #1. bicluster 220 motif PSSM #1 Phaeodactylum tricornutum 15x4
POSITION A C G T
1 0 0 0.777778 0.222222
2 0.222222 0 0.777778 0
3 0.444444 0.333333 0.222222 0
4 0 0.222222 0.777778 0
5 0.555556 0.222222 0 0.222222
6 0 0.666667 0.333333 0
7 0.111111 0 0.888889 0
8 0.777778 0 0.222222 0
9 0.111111 0.777778 0 0.111111
10 0 0.444444 0.444444 0.111111
11 0 0 1 0
12 0.444444 0.555556 0 0
13 0 0 1 0
14 0 0 1 0
15 0 1 0 0 [+] Show/hide bicluster #220 motif PSSM #2. bicluster 220 motif PSSM #2 Phaeodactylum tricornutum 24x4
POSITION A C G T
1 0 0.125 0.25 0.625
2 0 0.625 0.375 0
3 0.625 0 0.375 0
4 0.25 0.25 0.125 0.375
5 0 0.5 0.25 0.25
6 0.125 0.125 0.125 0.625
7 0 0 0.125 0.875
8 0.25 0 0.25 0.5
9 0 0.125 0.875 0
10 0 0 1 0
11 0.5 0.375 0 0.125
12 1 0 0 0
13 0 0.25 0 0.75
14 0.125 0 0.875 0
15 0 0.5 0.5 0
16 0 0.25 0.125 0.625
17 0.25 0 0.625 0.125
18 0 0.125 0 0.875
19 0 0.25 0.125 0.625
20 0 1 0 0
21 0 0.875 0 0.125
22 0.125 0 0 0.875
23 0.25 0 0.375 0.375
24 0 0 0.25 0.75 |