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[+] Show/hide bicluster #222 rows and columns.
bicluster 222
Phaeodactylum tricornutum
25x80
[+] Show/hide bicluster #222 rows (genes).
bicluster 222 genes
Phaeodactylum tricornutum
25
[+] Show/hide bicluster #222 rows (short gene names).
bicluster 222 short names
Phaeodactylum tricornutum
25
short_name
[+] Show/hide bicluster #222 rows (long gene names).
bicluster 222 long names
Phaeodactylum tricornutum
25
long_name
[+] Show/hide bicluster #222 rows (NCBI RefSeq gene IDs).
bicluster 222 NCBI RefSeq IDs
Phaeodactylum tricornutum
0
[+] Show/hide bicluster #222 gene upstream sequences.
bicluster 222 upstream sequences
Phaeodactylum tricornutum
24
upstream
[+] Show/hide bicluster #222 columns (arrays; conditions).
bicluster 222 arrays
Phaeodactylum tricornutum
80
[+] Show/hide bicluster #222 ratios.
bicluster 222 ratios
Phaeodactylum tricornutum
25x80
GENES GSE12015_Si_free_11v18_1 GSE12015_Si_free_11v18_2 GSE12015_Si_free_23v20_1 GSE17237_highlight_12hr_3 GSE17237_highlight_30min_1 GSE17237_highlight_30min_2 GSE17237_highlight_3hr_1 GSE17237_highlight_48hr_1 GSE17237_highlight_6hr_2 GSE31131_Cadmium_0.12mg_1 GSE31131_Cadmium_0.12mg_2 GSE31131_Cadmium_0.12mg_3 GSE31131_Cadmium_1.2mg_1 GSE31131_Cadmium_1.2mg_2 GSE31131_Cadmium_1.2mg_3 GSE34988_Ammonia_1 GSE34988_Ammonia_3 GSE34988_Ammonia_4 GSE34988_Ammonia_5 GSE34988_Cadmium_4 GSE34988_Cadmium_5 GSE34988_Control_2 GSE34988_Control_3 GSE34988_Control_4 GSE34988_Control_5 GSE34988_Control_6 GSE34988_Dispersant_1 GSE34988_Dispersant_3 GSE34988_Dispersant_4 GSE34988_Dispersed_oil_1 GSE34988_Dispersed_oil_2 GSE34988_Dispersed_oil_4 GSE34988_Mixture_1 GSE34988_Mixture_2 GSE34988_Mixture_3 GSE34988_Oil_1 GSE34988_Salinity_15ppt_1 GSE34988_Salinity_15ppt_2 GSE34988_Salinity_15ppt_3 GSE34988_Salinity_15ppt_4 GSE34988_Salinity_15ppt_5 GSE34988_Silver_1 GSE34988_Silver_2 GSE34988_Silver_3 GSE34988_Silver_4 GSE34988_Silver_5 GSE34988_Simazine_1 GSE34988_Simazine_4 GSE42039_light_0.5h_1 GSE42039_light_0.5h_2 GSE42039_light_0.5h_3 GSE42039_light_24h_1 GSE42039_light_24h_2 GSE42514_light_15.5hr_1 GSE42514_light_15.5hr_2 GSE42514_light_16hr_dark_30min_1 GSE42514_light_16hr_dark_30min_2 GSE42514_light_16hr_dark_4hr_1 GSE42514_light_16hr_dark_4hr_2 GSE42514_light_16hr_dark_7.5hr_1 GSE55959_BlueLight_0.5h_rep1 GSE55959_BlueLight_0.5h_rep2 GSE55959_BlueLight_0.5h_rep3 GSE55959_BlueLight_24h_rep1 GSE55959_BlueLight_24h_rep2 GSE55959_BlueLight_6h_rep1 GSE55959_BlueLight_6h_rep3 GSE55959_GreenLight_0.5h_rep1 GSE55959_GreenLight_0.5h_rep2 GSE55959_GreenLight_0.5h_rep3 GSE55959_GreenLight_24h_rep1 GSE55959_GreenLight_24h_rep2 GSE55959_GreenLight_24h_rep3 GSE55959_GreenLight_6h_rep3 GSE55959_RedLight_0.5h_rep1 GSE55959_RedLight_0.5h_rep2 GSE55959_RedLight_0.5h_rep3 GSE55959_RedLight_6h_rep1 GSE55959_RedLight_6h_rep2 GSE55959_RedLight_6h_rep3
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49664 0.212337395596224 0.0236287597354588 -0.0988517351991347 0.104244202238563 0 0.375552353778295 -0.728612079108987 -1.48278711219471 -1.00239200896278 -0.0152546408283923 -0.753357572768849 -0.18113535095904 0.0518851761799848 -0.190576324855922 -0.174822894681642 1.85804473296497 2.17738643706626 1.68440466179606 1.62571738446413 -0.0224263349560362 -0.277635429942938 -0.259098083238516 -0.403742795402225 0.053680328965437 -0.325877368380055 -0.132525617497078 0.720194880274142 0.853417635087999 0.548417884298941 0.705094545472004 0.625770551716961 0.720217284228929 1.20604115528046 1.45751093045569 1.32870135293217 0.196453694345453 0.323643204073532 0.143461413646492 0.732944448599632 0.46048797314359 0.764920780564748 -1.05743233649687 -0.338637616339651 -0.628981086469376 -0.505878240983711 -0.398828833608618 -0.88903149319613 -0.655489814322211 2.97845124337743 2.91778319665106 3.03947023268593 0.339385053550919 0.287817622493097 -1.12355366170206 -0.359787316186357 -1.20917403801939 -0.992907430137856 -1.01532447135778 -0.46329120968007 -0.214627389009282 2.90667358665712 3.15402482498375 3.05566660569461 0.324844659756983 -0.221091614295151 0.140239650744755 0.197649006695713 2.2103209845368 2.233467003864 1.83786173136656 -0.0533451012164919 0.317331166579964 -0.0869324042760191 0.379228737336923 1.19758377985053 1.47009011931244 1.60294910851916 -0.854419266781557 -0.740714321171016 -0.751798135022574
54411 -0.618758030623334 -0.66508035313448 -0.337442904132288 0.639721417453196 0.490374192247553 -0.00955862815613204 -0.016310867430202 -0.26302288088628 -0.772433180851916 -0.1890965115882 -0.483128299025554 -0.205637300035246 -0.0660786240025783 -0.286938047829443 -0.327025453354417 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2.7363481961171 2.64907704403131 2.54546371652122 0.749498607825319 0.757092147228559 -1.12653816703421 -1.73499778959198 -0.641771604200838 -1.11420195196252 -0.0848966422210278 -0.65795418388112 0.0293219599996978 1.66808188522257 2.12087842244258 1.77553513835726 0.623455990955228 0.0293806561899113 -0.545847408794188 -0.0119672927283482 1.59478961547412 1.58865527106849 1.11584198579289 0.0384173988358099 0.469037777108729 -0.0860909263410163 -0.0832448562239761 1.04285194232207 1.11153028211693 1.38277185716111 -0.558652385093091 -0.109527442792566 0.0525506915833651
708 0.246944566274069 -0.0628121031459439 -0.0848236481407749 0.886485220980406 0.216478035938035 1.5967563069368 -1.37071896626489 0.246561756795898 -0.212877672027611 NA NA NA -0.6964255910986 -0.521111610412234 -0.640930977079748 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2.03422134754177 2.09238175014294 1.9773183375596 0.425196449878664 0.478141717276929 -0.489984970608345 -0.094627942364956 0.0628561034968451 -0.500035538534538 -0.389220795123643 -0.621535524756379 -0.503397958560703 2.31960133813083 3.04791191353633 2.36356837621876 0.35806550042056 -0.00461385540617581 -1.12973827597649 -0.638895050043752 1.52051238444721 1.88355477342882 1.48103818507897 -0.106032928107464 0.151966433210048 0.0856456160946484 -0.788424948565708 1.90990119022827 2.01579147162227 1.91425583318732 -0.755675746501954 -0.696359542447912 -0.741816776762669
7114 -0.338274838007274 -0.400445682777911 -0.48961643727751 0.0677469624010992 0.485467539485456 -0.181050100511886 -1.6596788411003 -1.34136411587464 -1.87425707105152 -0.152515459072014 -0.581586656101639 -0.842867624644567 -0.706354660007054 -0.821949799844024 -0.236218731851498 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2.11438269122781 2.06912236103394 2.36228900141875 0.207117715667864 0.120506332838848 -0.0782517942245126 -0.295673453773535 -0.900489585422556 -0.623365596159608 -0.922342388305617 -0.567136288570923 -0.442559036284838 2.07058835148961 2.44950666779826 1.8328529950418 0.213595808865361 -0.403408046944242 0.274539596019654 -0.512265298911046 1.7624820307547 1.54287879686711 1.1751305502971 -0.400843770645204 0.500275376737726 -0.604241209667771 -0.167949622627095 1.42271026965669 1.45790365621715 1.68851779922216 -0.435138684919076 -0.433083136741827 -0.447289220855742
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9879 -0.153538888727923 -0.911504322769399 -1.39532818161728 0.791866581663761 0.636459021485552 0.258917159216868 -1.35291396778443 0.0087203149686102 -1.71374949837534 -0.482569446528739 -0.691227964964469 -0.645871374058995 -0.626908967177347 -0.580786448219466 -0.775544510020899 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2.5522969074106 2.88393051145156 2.73399590530272 -0.0249104636902385 0.0552326375805965 -0.529044165387913 0.582004538633159 -0.261733659514434 0.0805073000835178 -0.419714554801552 -0.214179144429888 -0.638479907498808 2.13237794393403 2.16136349533009 2.05262021906126 0.0289828098742748 -0.238214608329729 0.175573097428932 -0.312253264504533 2.38333074493071 2.51300339201429 2.17315234833849 0.00866533879351571 0.168296048473023 -0.0888379718183455 -0.352152513399886 1.2314525133335 1.45320703548709 1.40949366201059 -0.683444486109115 -0.352857721604681 -0.38121619241025
c24107-23460_cytochrome -0.56198071804428 -0.959412595725542 0.166369826701123 0.336220473596692 0.533131495127543 -0.00392870326903458 -0.361294093675456 0.579068854336422 -0.771062318616922 0.0654900844434683 0.235708304345079 -0.378485081617698 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2.23968508164374 2.46138678010193 1.99616268101929 -0.243153311163774 -0.0371926585563596 -0.436707888916262 -0.546096381434713 -0.760378464138906 -1.07447344361712 -0.270664234250167 -0.548222361870984 0.616301540364196 2.2693740576376 1.70520867357693 1.37388834876333 0.0372915782754366 -0.322874875179747 0.00392870326903457 -0.0166009071767355 1.67991798905068 1.94863737371997 0.878651640389454 -0.453126871298976 -0.165138323767714 -0.556675151652825 -0.940156458105318 2.20285035129377 1.91558564367242 0.978600504112231 -0.194363595408126 -0.174209606150311 -1.13883670497595
[+] Show/hide bicluster #222 motif PSSM #1. bicluster 222 motif PSSM #1 Phaeodactylum tricornutum 12x4
POSITION A C G T
1 0.764706 0.117647 0.058824 0.058824
2 0 0.705882 0 0.294118
3 0 0 0.058824 0.941176
4 0.058824 0.882353 0 0.058824
5 1 0 0 0
6 0 1 0 0
7 0.647059 0 0 0.352941
8 0.058824 0 0.941176 0
9 0 0 0 1
10 0.074556 0.896033 0.01368 0.015732
11 0.898085 0.072503 0.01368 0.015732
12 0.30985 0.01368 0.660739 0.015732 [+] Show/hide bicluster #222 motif PSSM #2. bicluster 222 motif PSSM #2 Phaeodactylum tricornutum 14x4
POSITION A C G T
1 0.015732 0.072503 0.896033 0.015732
2 0.058824 0.058824 0.588235 0.294118
3 0.529412 0.294118 0 0.176471
4 0.058824 0.823529 0.117647 0
5 0 0.058824 0.941176 0
6 0.176471 0.117647 0 0.705882
7 0.058824 0.941176 0 0
8 0 0 1 0
9 0.882353 0.117647 0 0
10 0.764706 0 0.235294 0
11 0.117647 0.882353 0 0
12 0 0.058824 0.470588 0.470588
13 0.058824 0.529412 0.235294 0.176471
14 0.058824 0.705882 0.235294 0 |