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[+] Show/hide bicluster #227 rows and columns.
bicluster 227
Phaeodactylum tricornutum
17x80
[+] Show/hide bicluster #227 rows (genes).
bicluster 227 genes
Phaeodactylum tricornutum
17
[+] Show/hide bicluster #227 rows (short gene names).
bicluster 227 short names
Phaeodactylum tricornutum
17
short_name
[+] Show/hide bicluster #227 rows (long gene names).
bicluster 227 long names
Phaeodactylum tricornutum
17
long_name
[+] Show/hide bicluster #227 rows (NCBI RefSeq gene IDs).
bicluster 227 NCBI RefSeq IDs
Phaeodactylum tricornutum
0
[+] Show/hide bicluster #227 gene upstream sequences.
bicluster 227 upstream sequences
Phaeodactylum tricornutum
17
upstream
[+] Show/hide bicluster #227 columns (arrays; conditions).
bicluster 227 arrays
Phaeodactylum tricornutum
80
[+] Show/hide bicluster #227 ratios.
bicluster 227 ratios
Phaeodactylum tricornutum
17x80
GENES GSE12015_Si_free_11v18_1 GSE12015_Si_free_11v18_2 GSE17237_highlight_12hr_1 GSE17237_highlight_12hr_2 GSE17237_highlight_30min_1 GSE17237_highlight_30min_2 GSE17237_highlight_3hr_2 GSE17237_highlight_3hr_3 GSE17237_highlight_48hr_1 GSE17237_highlight_6hr_1 GSE17237_highlight_6hr_3 GSE31131_Cadmium_1.2mg_1 GSE34988_Ammonia_1 GSE34988_Ammonia_2 GSE34988_Ammonia_3 GSE34988_Ammonia_4 GSE34988_Ammonia_5 GSE34988_Cadmium_1 GSE34988_Cadmium_3 GSE34988_Cadmium_4 GSE34988_Control_6 GSE34988_Copper_1 GSE34988_Copper_5 GSE34988_Dispersant_2 GSE34988_Dispersant_3 GSE34988_Dispersant_4 GSE34988_Dispersed_oil_1 GSE34988_Dispersed_oil_4 GSE34988_Dispersed_oil_5 GSE34988_Mixture_1 GSE34988_Mixture_2 GSE34988_Mixture_3 GSE34988_Mixture_4 GSE34988_Mixture_5 GSE34988_Salinity_15ppt_3 GSE34988_Salinity_15ppt_5 GSE34988_Silver_1 GSE34988_Silver_4 GSE42039_Dark_treated_48h_1 GSE42039_Dark_treated_48h_2 GSE42039_Dark_treated_48h_3 GSE42039_light_0.5h_1 GSE42039_light_0.5h_2 GSE42039_light_0.5h_3 GSE42039_light_24h_1 GSE42039_light_24h_2 GSE42039_light_24h_3 GSE42514_dark_8hr_light_3hr_2 GSE42514_light_0.5hr_1 GSE42514_light_10.5hr_1 GSE42514_light_10.5hr_2 GSE42514_light_15.5hr_1 GSE42514_light_15.5hr_2 GSE42514_light_16hr_dark_30min_1 GSE42514_light_16hr_dark_30min_2 GSE42514_light_16hr_dark_4hr_1 GSE42514_light_16hr_dark_4hr_2 GSE42514_light_16hr_dark_7.5hr_1 GSE42514_light_16hr_dark_7.5hr_2 GSE42514_light_6hr_1 GSE42514_light_6hr_2 GSE55959_BlueLight_0.5h_rep1 GSE55959_BlueLight_0.5h_rep2 GSE55959_BlueLight_0.5h_rep3 GSE55959_BlueLight_24h_rep2 GSE55959_BlueLight_24h_rep3 GSE55959_GreenLight_0.5h_rep1 GSE55959_GreenLight_0.5h_rep2 GSE55959_GreenLight_0.5h_rep3 GSE55959_GreenLight_24h_rep1 GSE55959_GreenLight_24h_rep3 GSE55959_GreenLight_6h_rep2 GSE55959_RedLight_0.5h_rep1 GSE55959_RedLight_0.5h_rep2 GSE55959_RedLight_0.5h_rep3 GSE55959_RedLight_24h_rep1 GSE55959_RedLight_24h_rep3 GSE55959_RedLight_6h_rep1 GSE55959_RedLight_6h_rep2 GSE55959_RedLight_6h_rep3
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32118 -0.569298650557543 -0.33352800718682 0.437914165388969 0.790808150471553 0.4353729249215 0.0400468908667468 0.153690537105173 0.456560909485761 0.247508193863215 0.115222509528863 0.634275188843507 0.34681069463021 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -2.18736161918923 -2.64355400176556 -2.55690355580636 -1.98542386879155 -1.87300812402643 -1.83309541459611 0.399806760560979 0.297025544415686 0.221003241999054 0.701445061540176 0.609680677182799 0.34233752169115 1.05984189187937 1.76200794549872 1.83298400482046 1.53644056325206 1.89839191967345 0.563093621617589 0.947094325806189 -0.377863581732029 0.194584456350612 0.187103080214817 1.10158252716138 -1.75726031952863 -1.9403702696889 -1.81318485951949 -0.00753805303628107 -0.0595973538839116 -2.05306675519176 -1.98651874456014 -1.68618992904931 -0.219882565697214 -0.222875183094294 0.109145751670757 -1.83884909149387 -1.85824209432978 -2.14247823892129 -0.113330475440658 -0.249934865917302 0.574065630652853 0.613930551998414 0.458612109522335
32848 -0.447897626473231 0.0970529266107169 0.341137809242527 0.45518609166512 0.353922451211577 -0.347072737868698 0.447290705618732 0.0752649249211047 0.156988719570424 0.178575417903536 0.230754858335077 0.39402905834265 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -2.91835661202994 -2.8746052598622 -2.97575653720293 -1.72678622070866 -1.79075002303468 -1.76244029879525 0.545030382864837 0.555235382390429 0.168013013159927 0.0988576885227998 -0.346430604106653 0.679034636254683 1.30732906472782 1.3352656564034 1.67274764392929 0.967189518270396 1.36000218112115 0.216872813323813 0.581423470218355 -0.0408046256969391 0.0497113909387682 0.254842988266336 0.725105670898675 -2.06703838999855 -1.88541715260348 -1.78091783648081 -0.331881432351649 -0.31264015109978 -2.02334796555366 -1.97241946706277 -2.076826120654 -0.471822043880369 -0.393150445961508 0.49810191157273 -1.85853513071602 -1.97050842027864 -2.26356230229815 -0.167945743308472 -0.386405000657851 0.677705747903357 0.640782062572597 0.55695460048588
34931 -0.48160931573419 -0.545694024351037 1.02836170921913 1.24310671958492 0.431056622294224 -0.224044327175267 0.10814516841102 0.483047834342754 0.215085457836906 0.300366539854934 0.628588479925521 -0.0628641644807176 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -2.62951307768473 -2.53831997888497 -2.52340029532437 -1.66094147205914 -1.45635589713632 -1.49424793069953 -0.00217360563530044 0.0825818656950742 0.0592589184628297 1.14399505784465 0.556092676481126 1.01982203862731 1.752820976838 1.59769159386655 1.79467921008516 1.13131385174324 1.53407369053259 0.324657872397707 0.902327010444251 -0.561948883891144 0.304516509989637 0.95863525563876 1.46507461815616 -1.70220639938691 -1.75986285091184 -1.78516645403673 -0.206089235199172 -0.199451493141531 -1.76077214448569 -1.56882624104302 -1.54403550912483 -0.276920926519618 -0.244292892354512 0.187874475478344 -2.0486723414498 -1.9921645941279 -2.10179243681499 -0.226212685576579 -0.262538318030963 0.455710758037213 0.416127803531829 0.436632314366469
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35859 -0.0441038776739347 -0.181082223545524 0.208142799928181 0.383239058417083 0.38102211657313 -0.283057333649004 0.344640667909636 0.108881968432125 0.351059683933095 0.0399713236628796 0.339726306331597 -0.0368166296735661 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -2.51838979630159 -2.48294508268538 -2.58539099144349 -2.00376157126018 -2.00376157126018 -1.61836186532455 0.296998864516133 0 -0.0675952826393392 0.950745653024881 0.19774278495203 0.861900257526984 1.33650841240649 1.13634515601344 1.53044703004247 0.869306390148705 1.35810493440257 0.235164526712934 0.734381477033247 -0.584962136011094 0.228698294588361 0.965236951689545 1.23032042449708 -2.13911085876153 -2.18608372982669 -2.16741313682738 -0.267759134030328 -0.384055454384725 -1.68220857860243 -1.52052621939689 -1.0179079198781 -0.238790284358644 -0.35790979856336 0.467215780349511 -2.40883360337524 -2.40473204586846 -2.65629993630974 -0.220986544732244 -0.275554741801611 0.531493695035487 0.722379119974984 0.447564576748959
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44850 -0.392864264371082 -0.382219408918871 0.4584459115492 0.380798227340076 0.230078279247778 -0.292528097900746 0.0605710950415781 0.38438386286082 0.447520928321931 0.0606364581890916 0.223517686755915 0.0652156135520426 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -2.81852967549005 -2.67912903314107 -2.78551561937733 -1.73085380290319 -1.77838038571924 -1.65435618118408 0.0828584931764542 0.0614916484445783 -0.0897604114192024 1.28187919911184 0.692830116077943 1.1552172748012 1.32723786092989 1.33786257064438 1.45238992056068 1.07255840954657 1.22218571572711 0.47161990671597 0.691920395538727 -0.430295137841807 0.0438420644825572 1.63455266470406 1.50698593871557 -2.09717325208395 -2.37612089063658 -2.41477220061136 -0.323051666770476 -0.319747430961643 -1.28478120594625 -1.18781186595829 -1.09026456958745 -0.410007027456532 -0.386723598337725 0.398143189515072 -1.90656224042693 -1.91148487678472 -2.07356841962096 -0.241094428487555 -0.31101195111957 0.375292011965865 0.374616256096745 0.404490157886579
44947 -0.392808607205647 -0.454554239461947 0.859144580822445 0.516508471827222 0.834189749785887 -0.313334051687647 0.669260073625604 0.145281631896023 0.582626362367617 0.412955205730355 0.518788471018307 -0.278835765665529 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -2.22812838219797 -2.29014644112901 -2.56301213317585 -1.71076554140074 -1.754762529386 -1.90455801219751 0.526476905548718 0.554238073972766 0.278476686860159 0.0814958082848598 0.530221512631025 0.767794384859806 0.756722336384633 1.5177450189455 1.36872891008843 1.42147764412978 1.30527665091089 0.695762435131404 0.608933400302384 -0.0500054379721021 -0.0593302231455237 0.206291041840896 0.6314575485267 -2.28440161713652 -2.28235519806178 -2.34797950647319 -0.183626660638213 -0.13926967595483 -1.75361080203262 -1.66530191055502 -1.72284278097832 -0.235615160381706 -0.146572296978234 0.403639319862458 -2.21594743485307 -2.44048555729308 -2.22025842851698 0.0583330532540374 -0.108671175804703 0.478995360665332 0.724984646297812 0.72454113241538
46003 0.00349371795175352 -0.228986270131348 0.318971234490691 0.49843709445017 0.394425113239756 -0.123887933836434 0.509039920074895 0.174790187675788 0.408573801860291 0 0.314339016410381 -0.190729189475579 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -2.35176241350191 -2.42084642197651 -2.55629301420096 -1.38212009009894 -1.97500564086765 -1.88099396942034 0.312039079928151 0.231345685903981 -0.050415051940867 0.912669874317602 0.314375249479792 0.933126516533279 1.30124112304824 1.1582807156678 1.51312282657292 0.992567025404804 1.52583430582376 0.275381083624161 0.836812875058987 -0.600222524081961 0.26826717362132 1.03552947322099 1.27568158342046 -2.07042967241181 -2.36999069492908 -2.17371877853305 -0.306197836533162 -0.379620962656311 -1.63651239599427 -1.63359313210405 -1.05895640955712 -0.308222581865283 -0.3415913937951 0.410329532848951 -2.26680962728626 -2.4997647169211 -2.69110452362221 -0.141494575972653 -0.288619413378011 0.563644668397195 0.60833128066098 0.298373295876956
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48481 -0.160741468430296 0.419233606931073 0.448087487657835 0.881996733673198 0.574667892948195 -0.288171795562983 0.622451851072264 0.740441285013183 0.97055279472213 0.30212789854212 0.665522606252515 0.0955437707412546 -2.49596687238968 -1.76144036732491 -3.09717019449361 -2.40486065948566 -1.90107306098071 -0.395090116196578 0.605719500126119 -0.000358954348994368 0.112351180410101 0.261337650268834 0.049058302442758 -0.144477334597987 -0.131014188219041 -0.388224988413606 -0.791712344485138 -0.0604422570100291 -0.216746055567945 -1.36090813154994 -2.12009676076433 -2.66962367587037 -0.774900195053291 -1.95753916388822 0.0611036652219085 0.227908939669105 -0.00386969173356901 -0.266161859766003 -2.53704312913739 -2.34290499517706 -2.42160138542836 -1.44728483908672 -1.58751992985705 -1.49686135198844 0.341190264137292 0.265853856516452 0.385648386904516 0.959822495703179 0.622285139224255 1.62697270480805 1.27231483223821 1.84999165218973 1.56910188693108 1.60794824533577 1.57975343681385 0.677788447489578 0.735266507866026 -0.0821089890740596 0.0793467430864933 1.59751086228771 0.978002975155129 -2.15131815406368 -1.99228007512359 -2.40045706281881 -0.0473950690160532 -0.123076139089129 -1.29878411448394 -1.25383234131768 -1.56891018249232 -0.0442969373968925 -0.0536120748532318 0.0750078088465111 -1.387189072435 -1.61113717528079 -1.78331621980472 -0.211802884025746 0.116291101281735 0.532740159669481 0.675963888679938 0.319311939631931
[+] Show/hide bicluster #227 motif PSSM #1. bicluster 227 motif PSSM #1 Phaeodactylum tricornutum 14x4
POSITION A C G T
1 0 0.666667 0 0.333333
2 0 0.055556 0.222222 0.722222
3 0.222222 0.166667 0.277778 0.333333
4 0 1 0 0
5 0 0 0.833333 0.166667
6 0.222222 0 0 0.777778
7 0 0.888889 0.111111 0
8 0.277778 0.166667 0 0.555556
9 0.388889 0.388889 0.222222 0
10 0.388889 0 0.5 0.111111
11 0 0 0.111111 0.888889
12 0.388889 0.277778 0.055556 0.277778
13 0 0.944444 0.055556 0
14 0.611111 0.111111 0.277778 0 [+] Show/hide bicluster #227 motif PSSM #2. bicluster 227 motif PSSM #2 Phaeodactylum tricornutum 11x4
POSITION A C G T
1 0 1 0 0
2 0 0 1 0
3 1 0 0 0
4 0 0.6 0.4 0
5 0.2 0 0.8 0
6 1 0 0 0
7 0 0.2 0.8 0
8 0 0 1 0
9 0 1 0 0
10 0.2 0.8 0 0
11 1 0 0 0 |